Acknowledgements

Funding for this database development has been gratefully obtained from Cystic Fibrosis Foundation Therapeutics (See Who's Involved).

If you have used the updated database of annotation information, please ensure that you acknowledge the Pseudomonas Genome Database publication:

Winsor GL, Lo R, Sui SJ, Ung KS, Huang S, Cheng D, Ching WK, Hancock RE, Brinkman FS (2005). Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation. Nucleic Acids Res. 33(Database issue): D338-43. Pubmed.

If you use the Pseudomonas aeruginosa PAO1 genome sequence data, please acknowledge the publication of the strain PAO1 genome sequence.

Stover, K.C., X.Q. Pham, A.L. Erwin, S.D. Mizoguchi, P. Warrener, M.J. Hickey, F.S.L. Brinkman, W. O. Hufnagle, D.J. Kowalik, M. Lagrou, R.L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L.L. Brody, S.N. Coulter, K.R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G.K.-S. Wong, Z. Wu, I. Paulsen, J. Reizer, M.H. Saier, R.E.W. Hancock, S. Lory, and M.V. Olson (2000). Complete genome sequence of Pseudomonas aeruginosa PAO1: an opportunistic pathogen. Nature. 406: 959-964. Pubmed.

If you use sequence data from any of the other Pseudomonas genome sequences, please acknowledge the appropriate genome project and genome sequence publication.

Pseudomonas aeruginosa PA14 genome sequence publication

Pseudomonas aeruginosa PA14 sequencing project home page

Pseudomonas aeruginosa PA7 sequencing project home page

Pseudomonas entomophila L48 Genome Sequencing Centre

Pseudomonas entomophila L48 genome sequence publication

Pseudomonas fluorescens Pf-5 genome sequence publication

Pseudomonas fluorescens PfO-1 sequencing project web page

Pseudomonas mendocina ymp sequencing project web page

Pseudomonas putida F1 sequencing project web page

Pseudomonas putida KT2440 genome sequence publication

Pseudomonas putida KT2440 genome web page

Pseudomonas syringae pv. tomato DC3000 genome sequence publication

Pseudomonas syringae pv. tomato DC3000 PeerGAD publication

Pseudomonas syringae pv. tomato DC3000 sequencing project home page

Pseudomonas syringae pv. tomato DC3000 annotation project web page

Pseudomonas syringae pv. syringae B728a genome sequence publication

Pseudomogas syringae pv. syringae B728a sequencing project home page

Pseudomonas syringae pv.phaseolicola 1448a genome sequence publication

Pseudomonas syringae pv.phaseolicola 1448a sequencing project web page

Pseudomonas entomophila L48 genome sequence publication

Vodovar N, Vallenet D, Cruveiller S, Rouy Z, Barbe V, Acosta C, Cattolico L, Jubin C, Lajus A, Segurens B, Vacherie B, Wincker P, Weissenbach J, Lemaitre B, Medigue C, Boccard F. (2006). Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila. Nat Biotechnol. 2006 Jun;24(6):673-9. PubMed .

Pseudomonas fluorescens Pf-5 genome sequence publication

Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, Deboy RT, Seshadri R, Ren Q, Madupu R, Dodson RJ, Durkin AS, Brinkac LM, Daugherty SC, Sullivan SA, Rosovitz MJ, Gwinn ML, Zhou L, Schneider DJ, Cartinhour SW, Nelson WC, Weidman J, Watkins K, Tran K, Khouri H, Pierson EA, Pierson LS, Thomashow LS, Loper JE (2005). Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nat Biotechnol. 2005 Jul;23(7):873-8. PubMed.

Pseudomonas putida KT2440 genome sequence publication:

Nelson KE, Weinel C, Paulsen IT, Dodson RJ, Hilbert H, Martins dos Santos VA, Fouts DE, Gill SR, Pop M, Holmes M, Brinkac L, Beanan M, DeBoy RT, Daugherty S, Kolonay J, Madupu R, Nelson W, White O, Peterson J, Khouri H, Hance I, Chris Lee P, Holtzapple E, Scanlan D, Tran K, Moazzez A, Utterback T, Rizzo M, Lee K, Kosack D, Moestl D, Wedler H, Lauber J, Stjepandic D, Hoheisel J, Straetz M, Heim S, Kiewitz C, Eisen JA, Timmis KN, Dusterhoft A, Tummler B, Fraser CM (2002). Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol. 4(12):799-808. PubMed.

Pseudomonas syringae DC3000 genome sequence publication:

Buell CR, Joardar V, Lindeberg M, Selengut J, Paulsen IT, Gwinn ML, Dodson RJ, Deboy RT, Durkin AS, Kolonay JF, Madupu R, Daugherty S, Brinkac L, Beanan MJ, Haft DH, Nelson WC, Davidsen T, Zafar N, Zhou L, Liu J, Yuan Q, Khouri H, Fedorova N, Tran B, Russell D, Berry K, Utterback T, Van Aken SE, Feldblyum TV, D'Ascenzo M, Deng WL, Ramos AR, Alfano JR, Cartinhour S, Chatterjee AK, Delaney TP, Lazarowitz SG, Martin GB, Schneider DJ, Tang X, Bender CL, White O, Fraser CM, Collmer A (2003). The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A. 18:10181-6. PubMed.

Pseudomonas syringae DC3000 PeerGAD publication:

D'Ascenzo MD, Collmer A, Martin GB (2004). PeerGAD: a peer-review-based and community-centric web application for viewing and annotating prokaryotic genome sequences. Nucleic Acids Res.10:3124-35. PubMed.

Pseudomonas syringae B728a genome sequence publication:

Chain,P., Larimer,F., DiBartolo,G., Copeland,A., Lykidis,A., Trong,S., Nolan,M., Goltsman,E., Thiel,J., Malfatti,S., Lapidus,A., Detter,J.C., Land,M., Richardson,P.M., Kyrpides,N.C. and Ivanova,N. (2005, in press). Comparison of two complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Natl. Acad. Sci. U.S.A.

Pseudomonas syringae pv. pathoelicola 1448a genome publication:

Joardar V, Lindeberg M, Jackson RW, Selengut J, Dodson R, Brinkac LM, Daugherty SC, Deboy R, Durkin AS, Giglio MG, Madupu R, Nelson WC, Rosovitz MJ, Sullivan S, Crabtree J, Creasy T, Davidsen T, Haft DH, Zafar N, Zhou L, Halpin R, Holley T, Khouri H, Feldblyum T, White O, Fraser CM, Chatterjee AK, Cartinhour S, Schneider DJ, Mansfield J, Collmer A, Buell CR. (2005). Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. J Bacteriol. 187(18):6488-98. PubMed.