"PaNumber" "Protein_Name" "Alt_Protein_Name" "Gene_Name" "Alt_gene_Name" "Rating" "Primary_Function" "Function" "Range_From" "Range_To" "EC_Number" "Evidence" "Medline" "Homology" "Genomic_Context" "Structure_Feature" "Pathways" "PA0001" "chromosomal replication initiator protein DnaA" "dnaA" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 483.00 2027.00 84237568.00 "90160310; 90117642; 83116961" "74% similar to DnaA protein [Escherichia coli]" "b3699-b3706 (Ecoli)" "PS01008: DnaA protein signature." "PA0002" "DNA polymerase III, beta chain" "dnaN" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 2056.00 3159.00 "2.7.7.7" 84237568.00 "92257585; 82060252" "92% similar to dnaN gene product of [P. putida]; 71% similar to DNA polymerase III beta-subunit [Escherichia coli]" "b3699-b3706 (Ecoli)" "PF00712: DNA polymerase III beta subunit." "Purine metabolism; Pyrimidine metabolism" "PA0003" "RecF protein" "recF" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 3169.00 4278.00 92178981.00 "89218947" "90% similar to RecF protein [Pseudomonas putida]; 59% similar to RecF protein [Escherichia coli]" "b3699-b3706 (Ecoli)" "PS00617: RecF protein signature 1." "PA0004" "DNA gyrase subunit B" "gyrB" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 4275.00 6695.00 "5.99.1.3" 99087756.00 "95314243; 89218947" "92% similar to DNA gyrase [Pseudomonas putida]; 82% similar to gyrB gene product [E. coli]." "b3699-b3706 (Ecoli)" "PS00177: DNA topoisomerase II signature." "PA0005" "probable acyltransferase" "Class 3" "Fatty acid and phospholipid metabolism" "Fatty acid and phospholipid metabolism" 7791.00 7018.00 97445095.00 "56% similar to putative 1-acyl-sn-glycerol-3-phosphate acyltransferase [Rickettsia prowazekii]; 44% similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase [Mus musculus]." "PA0006" "conserved hypothetical protein" "yaeD" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 8339.00 7803.00 "56% similar to putative phosphatase YaeD [Escherichia coli]." "PA0007" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 8671.00 10377.00 "PA0008" "glycyl-tRNA synthetase beta chain" "glyS" "Class 2" "Translation, post-translational modification, degradation" "Amino acid biosynthesis and metabolism; Translation, post-translational modification, degradation" 12488.00 10434.00 "6.1.1.14" 83290996.00 "83030764" "64% similar to glycyl-tRNA synthetase beta subunit [Escherichia coli]" "glyQS (Ecoli)" "Aminoacyl-tRNA biosynthesis; Glycine, serine and threonine metabolism" "PA0009" "glycyl-tRNA synthetase alpha chain" "glyQ" "Class 2" "Translation, post-translational modification, degradation" "Amino acid biosynthesis and metabolism; Translation, post-translational modification, degradation" 13435.00 12488.00 "6.1.1.14" 83290996.00 "83030764" "86% similar to glycine-tRNA synthetase, alpha subunit [Escherichia coli]" "glyQS (Ecoli)" "Aminoacyl-tRNA biosynthesis; Glycine, serine and threonine metabolism" "PA0010" "DNA-3-methyladenine glycosidase I" "tag" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 13540.00 14091.00 "3.2.2.20" 87057218.00 "86232617; 97096907" "88% similar to tag gene product [Pseudomonas fluorescens]; 66% similar to 3-methyladenine-DNA glycosylase I (tag) [E. coli]" "PA0011" "probable 2-OH-lauroyltransferase" "Class 3" "Cell wall / LPS / capsule" "Cell wall / LPS / capsule" 14235.00 15122.00 "2.3.1.-" 91266954.00 "95050264; 90368739" "88% similar to htrB gene product [Pseudomonas fluorescens]; 45% similar to HtrB protein [Escherichia coli]" "Lipopolysaccharide biosynthesis" "PA0012" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 15207.00 15473.00 "PA0013" "conserved hypothetical protein" "yhhQ" "Class 4" "Hypothetical, unclassified, unknown" "Membrane proteins" 15620.00 16273.00 "77% similar to hypothetical protein YhhQ [Escherichia coli]." "6 predicted transmembrane helices." "PA0014" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 16607.00 16335.00 "PA0015" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 17217.00 16900.00 "46% similar to putative protein [Aquifex aeolicus]." "PA0016" "potassium uptake protein TrkA" "trkA" "Class 2" "Transport of small molecules" "Transport of small molecules" 18739.00 17366.00 95035102.00 "79% similar to TrkA [Vibrio alginolyticus]; 79% similar to TrkA protein of the constitutive K+ -transport system Trk [Escherichia coli]" "b3287-b3290 (Ecoli)" "PA0017" "conserved hypothetical protein" "fmu sun" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 20071.00 18767.00 "94018648; 98386520" "63% similar to hypothetical protein Sun [Escherichia coli]." "b3287-b3290 (Ecoli)" "BL01153: NOL1/NOP2/sun family signature." "PA0018" "methionyl-tRNA formyltransferase" "fmt" "Class 2" "Translation, post-translational modification, degradation" "Amino acid biosynthesis and metabolism; Translation, post-translational modification, degradation" 21012.00 20068.00 "2.1.2.9" 92325012.00 "97042366; 93163064" "74% similar to methionyl-tRNA formyltransferase [Escherichia coli]" "b3287-b3290 (Ecoli)" "Aminoacyl-tRNA biosynthesis; Methionine metabolism; One carbon pool by folate" "PA0019" "polypeptide deformylase" "formylmethionine deformylase" "def" "Class 2" "Translation, post-translational modification, degradation" "Translation, post-translational modification, degradation" 21573.00 21067.00 97002011.00 "75% similar to E. coli polypeptide deformylase." "PA0020" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 21712.00 22737.00 "PA0021" "conserved hypothetical protein" "smf" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 22872.00 23960.00 "59% similar to Smf protein [Escherichia coli]." "PA0022" "conserved hypothetical protein" "yrdC" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 24001.00 24558.00 "63% similar to E. coli yrdC hypothetical gene product." "PA0023" "quinone oxidoreductase" "NADPH:quinone reductase" "qor" "Class 2" "Energy metabolism" "Energy metabolism" 25545.00 24568.00 "1.6.5.5" 95326140.00 "72% similar to quinone oxidoreductase [E. coli]." "PS01162: Quinone oxidoreductase / zeta-crystallin signature." "PA0024" "coproporphyrinogen III oxidase, aerobic" "hemF" "Class 2" "Biosynthesis of cofactors, prosthetic groups and carriers" "Biosynthesis of cofactors, prosthetic groups and carriers" 25736.00 26653.00 "1.3.3.3" 93352403.00 "80% similar to S. typhimurium hemF gene product." "Porphyrin and chlorophyll metabolism" "PA0025" "shikimate dehydrogenase" "aroE" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 26711.00 27535.00 "1.1.1.25" 88134021.00 "64% similar to E. coli shikimate dehydrogenase." "Phenylalanine, tyrosine and tryptophan biosynthesis" "PA0026" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 27646.00 28632.00 "PA0027" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 28613.00 29899.00 "PA0028" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 29896.00 30498.00 "PA0029" "probable sulfate transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 32055.00 30502.00 "48% similar to putative high affinity sulfate transporter [Aquifex aeolicus]." "PS01130: Sulfate transporters signature. 10 predicted transmembrane helices." "PA0030" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Transport of small molecules" 32983.00 32060.00 "PA0031" "choline sulfatase" "betC" "Class 2" "Adaptation, protection" "Adaptation, protection" 34511.00 33000.00 98409668.00 "62% similar to choline sulfatase [Sinorhizobium meliloti]." "PS00523: Sulfatases signature 1." "PA0032" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 34624.00 35538.00 "49% similar to glycine cleavage system transcriptional activator protein GcvA [Escherichia coli]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0033" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 36270.00 35905.00 "PA0034" "probable two-component response regulator" "Class 3" "Two-component regulatory systems" "Transcriptional regulators; Two-component regulatory systems" 36901.00 36278.00 92167813.00 "92167813" "86% similar to PUTATIVE TRANSCRIPTIONAL REGULATOR TrpO [Pseudomonas aeruginosa] 75% similar to BvgA positive transcription regulator; putative [Bordetella pertussis]" "BL00622: Bacterial regulatory proteins, luxR family signature. PF00486: Transcriptional regulatory protein, C terminal. PF00072: Response regulator receiver domain." "Two-component System" "PA0035" "tryptophan synthase alpha chain" "trpA" "Class 1" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 37893.00 37087.00 "4.2.1.20" 88174343.00 "88174343" "trpABI (Pseudomonas aeruginosa)" "BL00167: Tryptophan synthase alpha chain signature." "Phenylalanine, tyrosine and tryptophan biosynthesis" "PA0036" "tryptophan synthase beta chain" "trpB" "Class 1" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 39098.00 37890.00 "4.2.1.20" 88174343.00 "88174343" "trpABI (Pseudomonas aeruginosa)" "BL00168: Tryptophan synthase beta chain pyridoxal-phosphate attachment site." "Phenylalanine, tyrosine and tryptophan biosynthesis" "PA0037" "transcriptional regulator TrpI" "trpI" "Class 1" "Transcriptional regulators" "Amino acid biosynthesis and metabolism; Transcriptional regulators" 39202.00 40089.00 90192175.00 "97% similarity to TrpI protein [Pseudomonas aeruginosa]" "trpABI (Pseudomonas aeruginosa)" "BL00044: Bacterial regulatory proteins, lysR family signature." "PA0038" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 40190.00 40405.00 "PA0039" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 40589.00 40816.00 "57% similar to hypothetical protein YnfD [Escherichia coli]." "PA0040" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 41113.00 42801.00 90170827.00 "48% similar to hemolysin activator protein HpmB precursor [Proteus mirabilis]." "PA0041" "probable hemagglutinin" "Class 3" "Secreted factors (toxins, enzymes, alginate)" "Secreted factors (toxins, enzymes, alginate)" 42914.00 53521.00 89202384.00 "43% similar to regions of filamentous hemagglutinin [Bordetella pertussis]." "PA0042" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 56546.00 56941.00 "PSORT predicted signal peptide or lipoprotein." "PA0043" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 58594.00 57212.00 "58% similar to hypothetical protein [Methanobacterium thermoautotrophicum]." "11 predicted transmembrane helices." "PA0044" "exoenzyme T" "exoT" "Class 1" "Secreted factors (toxins, enzymes, alginate)" "Secreted factors (toxins, enzymes, alginate)" 58786.00 60159.00 "2.4.2.-" 96200112.00 "96200112" "99% similar to ADP-ribosyltransferase (exoenzyme 53) [Pseudomonas aeruginosa]" "Type III Secretion" "PA0045" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 60656.00 61342.00 "PSORT predicted lipoprotein." "PA0046" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 61373.00 61726.00 "PSORT predicted lipoprotein." "PA0047" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 61879.00 62388.00 "PA0048" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 62786.00 62403.00 "55% similar to a region of TrbA [Plasmid RK2] [Escherichia coli]." "PF01381: Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI." "PA0049" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 64729.00 63068.00 "PA0050" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 65339.00 65479.00 "PA0051" "probable glutamine amidotransferase" "Class 3" "Putative enzymes" "Putative enzymes" 66303.00 68135.00 "59% similar to putative asparagine synthetase YucB [Bacillus subtilis]." "PS00443: Glutamine amidotransferases class-II active site." "PA0052" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 68616.00 68188.00 "55% similar to hypothetical protein [Synechocystis sp.]." "PA0053" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 69272.00 69526.00 "PA0054" "conserved hypothetical protein" "yjiI" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 70091.00 69543.00 "74% similar to hypothetical protein YjiI [Escherichia coli]." "PA0055" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 70636.00 70130.00 "PA0056" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 71622.00 70702.00 "55% similar to regulator GstR [Rhizobium leguminosarum]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0057" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 71730.00 72617.00 "PA0058" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 72680.00 73384.00 "PA0059" "osmotically inducible protein OsmC" "osmC" "Class 2" "Adaptation, protection" "Adaptation, protection" 73468.00 73923.00 91350191.00 "96417852; 98326816" "69% similar to osmotically inducible protein OsmC [Escherichia coli]." "PA0060" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 74034.00 74267.00 "58% similar to hypothetical protein YnfD [Escherichia coli]." "PA0061" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 74716.00 74279.00 "PA0062" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 75189.00 74773.00 "PA0063" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 75281.00 76408.00 "PA0064" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 77399.00 76416.00 "PA0065" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 78097.00 77432.00 "54% similar to hypothetical protein Rv2233 [Mycobacterium tuberculosis]; 39% similar to phosphoglycolate phosphatase [Alcaligenes eutrophus]" "PA0066" "conserved hypothetical protein" "yrdA" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 78632.00 78090.00 "81% similar to putative transferase YrdA [Escherichia coli]." "PA0067" "oligopeptidase A" "prlC" "opdA" "Class 2" "Translation, post-translational modification, degradation" "Translation, post-translational modification, degradation" 78710.00 80755.00 92394891.00 "99011323" "73% similar to oligopeptidase A [Escherichia coli]." "PS00142: Neutral zinc metallopeptidases, zinc-binding region signature." "PA0068" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 80752.00 81027.00 "PA0069" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 81116.00 82174.00 "72% similar to hypothetical protein [Brucella melitensis]." "PA0070" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 83318.00 82404.00 "3 predicted transmembrane helices." "PA0071" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 85092.00 83380.00 "42% similar to a region of endo-xylanase XylR [Bacillus stearothermophilus]." "PSORT predicted signal peptide." "PA0072" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 86284.00 85085.00 "4 predicted transmembrane helices." "PA0073" "probable ATP-binding component of ABC transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 87003.00 86284.00 "59% similar to putative ATP-binding component of a transport system YbjZ [Escherichia coli]." "PS00211: ABC transporters family signature." "PA0074" "serine/threonine protein kinase PpkA" "ppkA" "Class 1" "Translation, post-translational modification, degradation" "Adaptation, protection; Translation, post-translational modification, degradation" 90098.00 87000.00 99426839.00 "99069359" "Probable phosphatase directly upstream." "PS00107: Protein kinases ATP-binding region signature." "PA0075" "probable phosphoprotein phosphatase" "Class 3" "Putative enzymes" "Putative enzymes" 90834.00 90106.00 "51% similar to putative phosphoprotein phosphatase ppp [Mycobacterium tuberculosis]." "PpkA kinase directly downstream." "PF00481: Protein phosphatase 2C." "PA0076" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 91524.00 90844.00 "PA0077" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 94826.00 91521.00 "40% similar to IcmF protein [Legionella pneumophila]." "PA0078" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 96397.00 95048.00 "53% similar in the C-terminal ~120 amino acids to motility protein B [Bacillus subtilis]." "PF00691: OmpA family." "PA0079" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 97738.00 96404.00 "75% similar over a small region in the C-terminus to hypothetical protein z29f [Vibrio cholerae]." "Adjacent to a predicted lipoprotein; similar context as the paralog." "PA0080" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 98218.00 97754.00 "PSORT predicted lipoprotein." "PA0081" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 99756.00 98263.00 "41% similar to a region of circumsporozoite protein [Plasmodium berghei]." "PA0082" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 100124.00 101158.00 "PA0083" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 101247.00 101765.00 "61% similar to putative 19.5 kDa protein [Edwardsiella ictaluri]." "5-gene cluster in PA01 contains 4 genes homologous to a 4-gene cluster in Edwardsiella ictaluri" "PA0084" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 101778.00 103274.00 "66% similar to putative 54.5 kDa protein [Edwardsiella ictaluri]." "5-gene cluster in PA01 contains 4 genes homologous to a 4-gene cluster in Edwardsiella ictaluri" "PA0085" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 103350.00 103838.00 "47% similar to putative 17.8 kDa protein [Edwardsiella ictaluri]" "5-gene cluster in PA01 contains 4 genes homologous to a 4-gene cluster in Edwardsiella ictaluri" "PA0086" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 104006.00 104851.00 "Flanked by genes homologous to a 4-gene cluster in Edwardsiella ictaluri" "PA0087" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 104853.00 105362.00 "45% similar to putative 18.8 kDa protein [Edwardsiella ictaluri]." "5-gene cluster in PA01 contains 4 genes homologous to a 4-gene cluster in Edwardsiella ictaluri" "PA0088" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 105359.00 107218.00 "PA0089" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 107182.00 108228.00 "PA0090" "probable ClpA/B-type chaperone" "Class 3" "Chaperones & heat shock proteins" "Translation, post-translational modification, degradation" 108221.00 110929.00 "56% similar to putative ClpB protein [Synechococcus sp.]." "PS00870: Chaperonins clpA/B signature 1." "PA0091" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 110976.00 112907.00 98361897.00 "N-terminal ~500 amino acids 51-53% similar to VgrE and VgrG proteins [E. coli]." "PA0092" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 113306.00 113022.00 "PA0093" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 114595.00 113303.00 "PA0094" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 115045.00 114611.00 "PA0095" "conserved hypothetical protein" "vgr" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 115299.00 117524.00 98361897.00 "N-tN-terminal ~500 amino acids 50% similar to VgrE and VgrG proteins [E. coli]." "PA0096" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 117552.00 118001.00 "PA0097" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 117931.00 119130.00 "PA0098" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 119127.00 120164.00 "PA0099" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 120164.00 121324.00 "PA0100" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 121346.00 122266.00 "PA0101" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 122248.00 123495.00 "PA0102" "probable carbonic anhydrase" "Class 3" "Central intermediary metabolism" "Central intermediary metabolism" 123871.00 124599.00 "68% similar to carbonic anhydrase CynT [Escherichia coli]." "PS00704: Prokaryotic-type carbonic anhydrases signature 1." "PA0103" "probable sulfate transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 124810.00 126381.00 "59% similar to hypothetical protein Rv3273 [Mycobacterium tuberculosis]." "PS01130: Sulfate transporters signature. 12 predicted transmembrane helices." "PA0104" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 126518.00 127114.00 "PA0105" "cytochrome c oxidase, subunit II" "coxB" "coII" "Class 2" "Energy metabolism" "Energy metabolism" 127378.00 128502.00 98021406.00 "95379947" "56% similar to cytochrome c oxidase II [Paracoccus denitrificans]." "PS00078: Cytochrome c oxidase, subunit II {CO II) and nitrous oxide reductase dinuclear copper centers signature. PS00190: Cytochrome c family heme-binding site signature. 3 predicted transmembrane helices." "PA0106" "cytochrome c oxidase, subunit I" "coxA" "coI" "Class 2" "Energy metabolism" "Energy metabolism" 128512.00 130104.00 94161496.00 "71% similar to cytochrome-c oxidase, subunit I [Bradyrhizobium japonicum]." "PS00077: Heme-copper oxidase catalytic subunit, copper B binding region signature. 12 predicted transmembrane helices." "PA0107" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Energy metabolism" 130115.00 130669.00 "55% similar to probable cytochrome c assembly protein [Paracoccus denitrificans]." "PA0108" "cytochrome c oxidase, subunit III" "coIII" "Class 2" "Energy metabolism" "Energy metabolism" 130680.00 131567.00 "1.9.3.1" 93077508.00 "cytochrome c oxidase, subunit III [Rhodobacter sphaeroides]." "PF00510: Cytochrome c oxidase subunit III. 7 predicted transmembrane helices." "PA0109" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 131792.00 131583.00 "PA0110" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 131808.00 132602.00 "2 predicted transmembrane helices." "PA0111" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 132577.00 133155.00 "PA0112" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 133220.00 134293.00 "49% similar to a region of putative heme O oxygenase [Aquifex aeolicus]." "8 predicted transmembrane helices." "PA0113" "probable cytochrome c oxidase assembly factor" "Class 3" "Energy metabolism" "Energy metabolism" 134319.00 135233.00 "59% similar to cytochrome c oxidase folding protein [Synechocystis sp.]." "PS00943: Cytochrome c oxidase assembly factor COX10/ctaB/cyoE signature. 8 predicted transmembrane helices." "PA0114" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 135259.00 135894.00 "73% similar to hypothetical protein [Pseudomonas stutzeri]." "PA0115" "conserved hypothetical protein" "elaA" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 136386.00 135934.00 "69% similar to hypothetical protein ElaA [Escherichia coli]." "PF00583: Acetyltransferase (GNAT) family. (weak)" "PA0116" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 136518.00 136991.00 "65% similar to hypothetical protein Rv3095 [Mycobacterium tuberculosis]." "PA0117" "probable short chain dehydrogenase" "Class 3" "Putative enzymes" "Putative enzymes" 137248.00 137976.00 "44% similar to putative alcohol dehydrogenase [Rhizobium leguminosarum bv. viciae]." "PF00106: Short chain dehydrogenase." "PA0118" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 138001.00 138588.00 95095951.00 "47% similar to 2-hydroxychromene-2-carboxylate isomerase NahD [Pseudomonas putida]." "PA0119" "probable dicarboxylate transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 138818.00 140167.00 92199261.00 "94049668" "67% similar to membrane-associated dicarboxylate transport protein DctA [Rhizobium meliloti]." "PS00713: Sodium:dicarboxylate symporter family signature 1. 10 predicted transmembrane helices." "PA0120" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 140216.00 140902.00 "45% similar to putative transcriptional regulator LldR [Escherichia coli]." "PS00043: Bacterial regulatory proteins, gntR family signature." "PA0121" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 141003.00 141737.00 "44% similar to hypothetical transcriptional regulator [Streptomyces ambofaciens]." "PS00043: Bacterial regulatory proteins, gntR family signature (very weak)." "PA0122" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 141917.00 142327.00 94368843.00 "58% similar to Asp hemolysin [Aspergillus fumigatus]." "PA0123" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 143267.00 142359.00 "51% similar to transcriptional activator PtxR [Pseudomonas aeruginosa]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0124" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 143848.00 143567.00 "PA0125" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 144072.00 143845.00 "PA0126" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 144868.00 144248.00 "PA0127" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 144969.00 145469.00 "PA0128" "conserved hypothetical protein" "phnA" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 145542.00 145883.00 90170953.00 "85% similar to putative alkylphosphonate uptake protein PhnA [Escherichia coli]." "Not in phosphonate utilization operon, which is elsewhere." "PA0129" "gamma-aminobutyrate permease" "gabP" "Class 2" "Transport of small molecules" "Transport of small molecules" 147392.00 145965.00 94127927.00 "77% similar to gamma-aminobutyrate permease GabP [Escherichia coli]" "PS00218: Amino acid permeases signature. 12 predicted transmembrane helices." "PA0130" "probable aldehyde dehydrogenase" "Class 3" "Putative enzymes" "Putative enzymes" 149054.00 147561.00 92317087.00 "68% similar to methylmalonate semialdehyde dehydrogenase MmsA [Pseudomonas aeruginosa]." "PS00687: Aldehyde dehydrogenases glutamic acid active site." "PA0131" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 149425.00 149138.00 "PA0132" "beta-alanine--pyruvate transaminase" "omega-amino acid--pyruvate transaminase" "oapT" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 150771.00 149425.00 "2.6.1.18" 92316928.00 "87% similar to beta-alanine--pyruvate transaminase [Pseudomonas putida]." "PS00600: Aminotransferases class-III pyridoxal-phosphate attachment site." "PA0133" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 150906.00 151823.00 "47% similar to transcriptional regulator OxyR [Mycobacterium xenopi]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0134" "probable guanine deaminase" "gda2" "Class 3" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 153306.00 151936.00 "70% similar to hypothetical protein YgfP [Escherichia coli]; 47% similar to guanine deaminase GDA [Homo sapiens]" "Purine metabolism" "PA0135" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 153696.00 153836.00 "PA0136" "probable ATP-binding component of ABC transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 154417.00 155988.00 "59% similar to putative ribose ABC transporter, ATP-binding protein [Archaeoglobus fulgidus]." "PS00211: ABC transporters family signature." "PA0137" "probable permease of ABC transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 155988.00 157085.00 "59% similar to ribose ABC transporter, permease protein [Archaeoglobus fulgidus]." "PF01032: FecCD transport family. DM00914: BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEMS INNER MEMBRANE. 9 predicted transmembrane helices." "PA0138" "probable permease of ABC transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 157108.00 158034.00 "63% similar to putative ribose ABC transporter, permease protein [Archaeoglobus fulgidus]." "DM00914: BINDING-PROTEIN-DEPENDENT TRANSPORT SYSTEMS INNER MEMBRANE. 7 predicted transmembrane helices." "PA0139" "alkyl hydroperoxide reductase subunit C" "ahpC" "Class 2" "Adaptation, protection" "Adaptation, protection" 158199.00 158762.00 97334113.00 "92% similar to alkyl hydroperoxide reductase subunit C [Xanthomonas campestris]." "PF00578: AhpC/TSA family." "PA0140" "alkyl hydroperoxide reductase subunit F" "ahpF" "Class 2" "Adaptation, protection" "Adaptation, protection" 158907.00 160472.00 97334113.00 "87% similar to alkyl hydroperoxide reductase subunit F [Xanthomonas campestris]." "PS00573: Pyridine nucleotide-disulphide oxidoreductases class-II active site." "PA0141" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 161448.00 160552.00 "74% similar to putative transcriptional regulator pvdS [Mycobacterium tuberculosis]." "PA0142" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 161906.00 163255.00 97208208.00 "51% similar to hydroxyatrazine hydrolase AtzB [Pseudomonas sp. ADP]." "PA0143" "probable nucleoside hydrolase" "Class 3" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 163426.00 164415.00 "60% similar to hypothetical protein YeiK [Escherichia coli]." "PS01247: Inosine-uridine preferring nucleoside hydrolase family signature." "PA0144" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 165069.00 164443.00 "PA0145" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 165737.00 165219.00 "PA0146" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 165976.00 167073.00 "63% similar to predicted coding region AF0890 [Archaeoglobus fulgidus]." "PA0147" "probable oxidoreductase" "Class 3" "Putative enzymes" "Putative enzymes" 167146.00 168108.00 "90174998" "45% similar to isopenicillin N synthase [Flavobacterium sp.]." "PF00671: Iron/Ascorbate oxidoreductase family. PS00185: Isopenicillin N synthetase signature 1." "PA0148" "probable adenosine deaminase" "add" "Class 3" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 168213.00 169163.00 "91152042" "46% similar to adenosine deaminase [Escherichia coli]; 62% similar to adenosine deaminase (putative) [Saccharomyces cerevisiae]" "PS00485: Adenosine and AMP deaminase signature." "PA0149" "probable sigma-70 factor, ECF subfamily" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 169361.00 169906.00 "48% similar to regulatory protein PvdS [Pseudomonas aeruginosa]." "PS01063: Sigma-70 factors ECF subfamily proteins." "PA0150" "probable transmembrane sensor" "Class 3" "Transcriptional regulators" "Membrane proteins; Transcriptional regulators" 169903.00 170898.00 91072220.00 "45% similar to regulatory protein PupR [Pseudomonas putida]." "PA0151" "probable TonB-dependent receptor" "Class 3" "Transport of small molecules" "Transport of small molecules" 171047.00 173434.00 "43% similar to ferric-pseudobactin receptor PupB [Pseudomonas putida]." "PF00593: TonB dependent receptor C-terminal region." "PA0152" "transcriptional regulator PcaQ" "pcaQ" "Class 2" "Transcriptional regulators" "Carbon compound catabolism; Transcriptional regulators" 173811.00 174638.00 96125256.00 "95325324" "56% similar to regulatory protein PcaQ [Agrobacterium tumefaciens]." "PS00044: Bacterial regulatory protein, LysR family signature." "Aromatic compound catabolism" "PA0153" "protocatechuate 3,4-dioxygenase, beta subunit" "pcaH" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 174773.00 175492.00 89057125.00 "90% similar to protocatechuate 3,4-dioxygenase, beta subunit [Pseudomonas putida]." "PS00083: Intradiol ring-cleavage dioxygenases proteins." "Aromatic compound catabolism" "PA0154" "protocatechuate 3,4-dioxygenase, alpha subunit" "pcaG" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 175503.00 176108.00 97400461.00 "87% similar to protocatechuate 3,4-dioxygenase, alpha subunit [Pseudomonas putida]" "PS00083: Intradiol ring-cleavage dioxygenases proteins." "Aromatic compound catabolism" "PA0155" "transcriptional regulator PcaR" "pcaR" "Class 2" "Transcriptional regulators" "Carbon compound catabolism; Transcriptional regulators" 176315.00 177154.00 94364957.00 "88% similar to regulatory protein PcaR [Pseudomonas putida]." "PS01051: Bacterial regulatory proteins, iclR family proteins." "Aromatic compound catabolism" "PA0156" "probable RND efflux membrane fusion protein precursor" "Class 3" "Transport of small molecules" "Transport of small molecules" 177307.00 178458.00 "45% similar to acriflavine resistance protein AcrE [Escherichia coli]." "PSORT: Lipoprotein Possible modific. site: 30 CRend: 10 Sequence Pattern: CGAE" "PA0157" "probable RND efflux membrane fusion protein precursor" "Class 3" "Transport of small molecules" "Transport of small molecules" 178455.00 179525.00 "47% similar to membrane-fusion protein IfeA [Agrobacterium tumefaciens]." "PSORT: Lipoprotein Possible modific. site: 18 CRend: 1 Sequence Pattern: CGDE" "PA0158" "probable RND efflux transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 179522.00 182569.00 "45% similar to putative cation efflux system protein [Helicobacter pylori]." "PR00702/PF00873: ACRIFLAVIN RESISTANCE PROTEIN FAMILY SIGNATURE. PD01612: PROTEIN TRANSMEMBRANE TRANSPORT INNER MEMBRANE RESISTANCE" "PA0159" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 182768.00 183706.00 "52% similar to regulator GstR [Bradyrhizobium japonicum]." "PS00044: Bacterial regulatory proteins, lysR family proteins." "PA0160" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 183822.00 184007.00 "PSORT predicted signal peptide." "PA0161" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 184287.00 184439.00 "PA0162" "probable porin" "opdC" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 184594.00 185928.00 "58% similar to porin OprD precursor [Pseudomonas aeruginosa]." "PSORT: Seems to have a cleavable N-term signal seq. Possible cleavage site: 22" "PA0163" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 186754.00 185957.00 "52% similar to putative regulatory protein YeaM [Escherichia coli]." "PS00041: Bacterial regulatory proteins, araC family signature." "PA0164" "probable gamma-glutamyltranspeptidase" "Class 3" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 186832.00 188448.00 "63% similar to putative gamma-glutamyltranspeptidase [Mycobacterium tuberculosis]; 48% similar to cephalosporin acylase [Pseudomonas sp.]" "PS00462: Gamma-glutamyltranspeptidase signature." "Glutathione metabolism" "PA0165" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 189120.00 189956.00 "46% similar to region of outer membrane protein Tsx [Salmonella typhimurium]." "PA0166" "probable transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 190198.00 191604.00 "67% similar to putative transport protein YicE [Escherichia coli]." "PS01116: Xanthine/uracil permeases family signature. 12 predicted transmembrane helices." "PA0167" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 191697.00 192362.00 "60% similar to putative regulator YcdC [Escherichia coli]." "PS01081: Bacterial regulatory proteins, tetR family signature." "PA0168" "conserved hypothetical protein" "yigZ" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 192368.00 192958.00 "51% similar to hypothetical protein YigZ [Escherichia coli]." "PS00910: Uncharacterized protein family UPF0029 signature." "PA0169" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 193672.00 192965.00 "63% similar to a region of hypothetical protein [Aquifex aeolicus]." "PF00990: Domain of unknown function." "PA0170" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 194179.00 193799.00 "PA0171" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 194748.00 194206.00 "PA0172" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 196748.00 194757.00 "45% similar to a region of hypothetical protein [Synechocystis sp.]." "2 predicted transmembrane helices." "PA0173" "probable methylesterase" "response regulator for chemotaxis" "Class 3" "Chemotaxis" "Adaptation, protection; Chemotaxis" 198060.00 197011.00 "3.1.1.61" 86085665.00 "88165060" "76% similar to response regulator (CheB) for chemotaxis protein [Escherichia coli]" "chemotaxis operon" "PF01339: CheB methylesterase; PF00072: Response regulator receiver domain;" "Chemotactic transducer (MCP); Chemotaxis" "PA0174" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 198682.00 198080.00 "95349401" "62% similar to conserved hypothetical protein [Borrelia burgdorferi]" "chemotaxis operon" "Chemotaxis" "PA0175" "probable chemotaxis protein methyltransferase" "cheR2" "Class 3" "Chemotaxis" "Adaptation, protection; Chemotaxis; Transcriptional regulators" 199530.00 198688.00 "2.1.1.80" 87250466.00 "68% similar to methyltransferase CheR [Salmonella typhimurium]" "chemotaxis operon" "PR00996: Glutamate methyltransferase." "Chemotaxis; Two-component System" "PA0176" "probable chemotaxis transducer" "methyl-accepting chemotaxis protein" "Class 3" "Chemotaxis" "Adaptation, protection; Chemotaxis" 201639.00 199600.00 "91236753" "72% similar to C terminus of methyl-accepting chemotaxis protein (MCP1)I, serine sensor receptor [Escherichia coli]" "chemotaxis operon" "BL00538: Bacterial chemotaxis sensory transducers signature." "Chemotactic transducer (MCP); Chemotaxis" "PA0177" "probable purine-binding chemotaxis protein" "Class 3" "Chemotaxis" "Adaptation, protection; Chemotaxis" 202160.00 201675.00 91296802.00 "91296802" "78% similar to Chemotaxis protein CheW [Escherichia coli]" "chemotaxis operon" "DM01794: CHEMOTAXIS CHEW PROTEIN." "Chemotaxis" "PA0178" "probable two-component sensor" "probable chemotaxis protein sensory transduction histidine kinase" "Class 3" "Two-component regulatory systems" "Adaptation, protection; Chemotaxis; Two-component regulatory systems" 204066.00 202147.00 "2.7.3.-" 99142610.00 "88144445" "60% similar to chemotaxis protein cheA [Salmonella typhimurium]" "chemotaxis operon" "PR00344: BACTERIAL SENSOR PROTEIN C-TERMINAL SIGNATURE" "Chemotaxis; Two-component System" "PA0179" "probable two-component response regulator" "probable chemotaxis response regulator" "Class 3" "Two-component regulatory systems" "Adaptation, protection; Chemotaxis; Two-component regulatory systems" 204459.00 204094.00 95349401.00 "96312364" "69% similar to chemotaxis response regulator [Rhodobacter sphaeroides]; 65% similar to CheY1 [Rhizobium meliloti]; 61% similar to cheY peptide [Escherichia coli]" "chemotaxis operon" "PF00072: Response regulator receiver domain; PF00486: Transcriptional regulatory protein, C terminal" "Chemotaxis; Two-component System" "PA0180" "probable chemotaxis transducer" "Class 3" "Chemotaxis" "Adaptation, protection; Chemotaxis" 205829.00 204657.00 97334134.00 "97334134" "43% similar to C-terminus of aerotaxis sensor receptor [Escherichia coli]" "chemotaxis operon" "BL00538: Bacterial chemotaxis sensory transducers signature." "Chemotactic transducer (MCP); Chemotaxis" "PA0181" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 206954.00 206022.00 "48% similar to putative transcriptional regulator YeaT [Escherichia coli]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0182" "probable short-chain dehydrogenase" "yjgI" "Class 3" "Putative enzymes" "Putative enzymes" 207071.00 207823.00 "64% similar to putative oxidoreductase YjgI [Escherichia coli]." "PS00061: Short-chain dehydrogenases/reductases family signature." "PA0183" "arylsulfatase" "atsA" "Class 1" "Carbon compound catabolism" "Carbon compound catabolism; Central intermediary metabolism" 209533.00 207923.00 95262702.00 "95% similar to arylsulfatase [Pseudomonas aeruginosa]." "Adjacent to sulfate ester transporter" "PS00523: Sulfatases signature 1." "Aromatic compound catabolism" "PA0184" "probable ATP-binding component of ABC transporter" "atsC" "Class 3" "Transport of small molecules" "Transport of small molecules" 210460.00 209621.00 "95% similar to putative transporter, ATP-binding component AtsC [Pseudomonas aeruginosa]." "PS00211: ABC transporters family signature." "PA0185" "probable permease of ABC transporter" "atsB" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 212073.00 210457.00 95262702.00 "89% similar to putative ABC-type transporter, membrane subunit AtsB [Pseudomonas aeruginosa]." "PF00528: Binding-protein-dependent transport systems inner membrane component. 10 predicted transmembrane helices." "PA0186" "probable binding protein component of ABC transporter" "atsR" "Class 3" "Transport of small molecules" "Transport of small molecules" 212340.00 213401.00 "100% similar to putative sulfate ester binding protein atsR [Pseudomonas aeruginosa]." "PD02951: BIOSYNTHESIS PROTEIN THIAMIN PRECURSOR PYRIMIDINE ENZYME THIAMINE PERIPLASMIC SIGNAL LIPOPROTEIN." "PA0187" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 213819.00 214634.00 "PA0188" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 214631.00 215512.00 "44% similar to hypothetical protein MTH1382 [Methanobacterium thermoautotrophicum]." "8 predicted transmembrane helices." "PA0189" "probable porin" "opdI" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 216908.00 215550.00 "55% similar to porin OprD precursor [Pseudomonas aeruginosa]." "PSORT predicted signal peptide." "PA0190" "probable acid phosphatase" "Class 3" "Putative enzymes" "Putative enzymes" 217156.00 217881.00 "42% similar to acid phosphatase PhoC [Morganella morganii]." "PS01157: Class A bacterial acid phosphatases signature." "PA0191" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 218822.00 217905.00 "59% similar to transcriptional control factor SdsB [Pseudomonas sp.]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0192" "probable TonB-dependent receptor" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 219172.00 221544.00 95075311.00 "39% similar to pesticin receptor precursor FyuA [Yersinia enterocolitica]." "PS00430: TonB-dependent receptor proteins signature 1. PSORT predicted signal peptide." "PA0193" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Putative enzymes" 221585.00 222487.00 "53% similar to taurine dioxygenase TauD [Escherichia coli]." "PA0194" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Putative enzymes" 222555.00 223454.00 "45% similar to taurine dioxygenase TauD [Escherichia coli]." "PA0195" "still frameshift pyridine nucleotide transhydrogenase alpha subunit" "pntA" "Class 2" "Transport of small molecules" "Energy metabolism; Transport of small molecules" 224101.00 225603.00 86274751.00 "61% similar to NAD(P)(+) transhydrogenase subunit alpha [Escherichia coli]." "adjacent to pntB, as in E. coli." "PA0196" "pyridine nucleotide transhydrogenase, beta subunit" "pntB" "Class 2" "Energy metabolism" "Energy metabolism; Transport of small molecules" 225603.00 227039.00 "1.6.1.1" 92339464.00 "86274751" "69% similar to pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli]." "Adjacent to pntA homolog, as in E. coli" "8 predicted transmembrane helices." "Nicotinate and nicotinamide metabolism" "PA0197" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Transport of small molecules" 227382.00 228194.00 "96262716" "43% similar to a region of TonB [Pseudomonas aeruginosa]." "Adjacent to homologs of ExbB and ExbD." "PA0198" "transport protein ExbB" "exbB1" "Class 2" "Transport of small molecules" "Transport of small molecules" 228223.00 228942.00 98037510.00 "89359155" "55% similar to ExbB [Xanthomonas campestris]." "DM01638: TOLQ PROTEIN." "PA0199" "transport protein ExbD" "exbD1" "Class 2" "Transport of small molecules" "Transport of small molecules" 228944.00 229345.00 89359155.00 "93172953" "60% similar to inner-membrane protein ExbD [Pseudomonas putida]." "PA0200" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 229738.00 229526.00 "PA0201" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 229954.00 230535.00 "49% similar to hypothetical protein [Clostridium beijerinckii]." "PA0202" "probable amidase" "Class 3" "Putative enzymes" "Putative enzymes" 232000.00 230543.00 "47% similar to enantiomerase-selective amidase [Rhodococcus sp.]." "BL00571: Amidases proteins." "PA0203" "probable binding protein component of ABC transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 233100.00 232066.00 "52% similar to spermidine/putrescine periplasmic transport protein PotD [Escherichia coli]." "1 of 4 contiguous ORFs that look like a ABC-type polyamine transporter." "PR00909: Bacterial periplasmic spermidine/putrescine-binding protein signature." "PA0204" "probable permease of ABC transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 233932.00 233123.00 "62% similar to putrescine transport system permease protein PotI [Escherichia coli]." "1 of 4 contiguous ORFs that look like a polyamine ABC-type transporter." "PS00402: Binding-protein-dependent transport systems inner membrane component signature. 6 predicted transmembrane helices." "PA0205" "probable permease of ABC transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 234849.00 233929.00 "60% similar to spermidine/putrescine transport system permease PotB [Escherichia coli]." "1 of 4 contiguous ORFs that look like a polyamine ABC-type transporter." "PS00402: Binding-protein-dependent transport systems inner membrane component signature. 6 predicted transmembrane helices." "PA0206" "probable ATP-binding component of ABC transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 235987.00 234875.00 "62% similar to ATP-binding component of spermidine/putrescine transport PotA [Escherichia coli]." "1 of 4 contiguous ORFs that look like a polyamine ABC-type transporter." "PS00211: ABC transporters family signature." "PA0207" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 236218.00 237111.00 "51% similar to glycine cleavage activator protein GcvA [Escherichia coli]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0208" "malonate decarboxylase alpha subunit" "mdcA" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 237232.00 238896.00 97352552.00 "85% similar to malonate decarboxylase alpha subunit MdcA [Klebsiella pneumoniae]." "PA0209" "conserved hypothetical protein" "mdcB" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 238896.00 239777.00 97352552.00 "65% similar to MdcB [Klebsiella pneumoniae]." "PA0210" "malonate decarboxylase delta subunit" "mdcC" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 239779.00 240078.00 97352552.00 "65% similar to malonate decarboxylase delta subunit MdcC [Klebsiella pneumoniae]" "PA0211" "malonate decarboxylase beta subunit" "mdcD" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 240071.00 240934.00 97352552.00 "83% similar to malonate decarboxylase beta subunit MdcD [Klebsiella pneumoniae]." "PA0212" "malonate decarboxylase gamma subunit" "mdcE" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 240931.00 241737.00 97352552.00 "70% similar to malonate decarboxylase gamma subunit MdcE [Klebsiella pneumoniae]." "PA0213" "hypothetical protein" "mdcG" "Class 4" "Hypothetical, unclassified, unknown" "Carbon compound catabolism" 241753.00 242445.00 "51% similar to putative malonate decarboxylase component MdcG [Klebsiella pneumoniae]." "PA0214" "probable acyl transferase" "mdcH" "Class 3" "Carbon compound catabolism" "Carbon compound catabolism" 242442.00 243374.00 97352552.00 "73% similar to putative malonate decarboxylase transacylase component MdcH [Klebsiella pneumoniae]." "PF00698: Acyl transferase domain." "PA0215" "probable transporter" "madL" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 243431.00 243835.00 97274645.00 "71% similar to putative malonate transporter MadL [Malonomonas rubra]." "3 predicted transmembrane helices." "PA0216" "probable transporter" "madM" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 243841.00 244605.00 97274645.00 "81% similar to putative malonate transporter MadM [Malonomonas rubra]." "8 predicted transmembrane helices." "PA0217" "probable transcriptional regulator" "mdcR" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 245619.00 244690.00 97352552.00 "65% similar to malonate decarboxylase operon regulator MdcR [Klebsiella pneumoniae]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0218" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 246868.00 245948.00 "49% similar to putative transcriptional regulator YvbU [Bacillus subtilis]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0219" "probable aldehyde dehydrogenase" "Class 3" "Putative enzymes" "Putative enzymes" 247219.00 248709.00 91216440.00 "68% similar to aldehyde dehydrogenase AldH [Escherichia coli]." "PS00687: Aldehyde dehydrogenases glutamic acid active site." "PA0220" "probable amino acid permease" "Class 3" "Transport of small molecules" "Transport of small molecules" 248767.00 250200.00 "43% similar to phenylalanine-specific transport system permease PheP[Escherichia coli]." "PS00218: Amino acid permeases signature." "PA0221" "probable aminotransferase" "Class 3" "Putative enzymes" "Putative enzymes" 250231.00 251613.00 "54% similar to putative aminotransferase Y4uB [Rhizobium sp. NGR234]." "PS00600: Aminotransferases class-III pyridoxal-phosphate attachment site." "PA0222" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 251777.00 252835.00 "50% similar to putative mannopine-binding periplasmic protein MotA [Agrobacterium tumefaciens]." "PA0223" "probable dihydrodipicolinate synthetase" "Class 3" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism; Cell wall / LPS / capsule" 253794.00 252913.00 "55% similar to putative dihydrodipicolinate synthase [Archaeoglobus fulgidus]." "PS00665: Dihydrodipicolinate synthetase signature 1." "PA0224" "probable aldolase" "Class 3" "Putative enzymes" "Putative enzymes" 254636.00 253854.00 "48% similar to fuculose-1-phosphate aldolase FucA [Escherichia coli]." "PF00596: Class II Aldolases and Adducin N-terminal domain." "PA0225" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 254791.00 255330.00 "51% similar to putative epoxidase [Methanobacterium thermoautotrophicum]." "PF01381: Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI." "PA0226" "probable CoA transferase, subunit A" "Class 3" "Carbon compound catabolism" "Carbon compound catabolism" 255481.00 256332.00 97238937.00 "51% similar to glutaconate CoA-transferase subunit A [Acidaminococcus fermentans]." "BL01273: CoA transferases proteins." "PA0227" "probable CoA transferase, subunit B" "pcaJ" "Class 3" "Carbon compound catabolism" "Carbon compound catabolism" 256329.00 257111.00 97238937.00 "55% similar to glutaconate CoA-transferase subunit B [Acidaminococcus fermentans]." "PA0228" "beta-ketoadipyl CoA thiolase PcaF" "pcaF" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism; Fatty acid and phospholipid metabolism" 257108.00 258313.00 95050205.00 "91% similar to PcaF [Pseudomonas putida]." "Organization of pca genes appears to be somewhat different than in P. putida." "BL00098: Thiolases acyl-enzyme intermediate proteins." "Aromatic compound catabolism" "PA0229" "dicarboxylic acid transporter PcaT" "alpha-ketoglutarate permease" "pcaT" "kgtP" "Class 2" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 258463.00 259761.00 91219460.00 "88% similar to dicarboxylic acid transport protein [Pseudomonas putida]; 83% similar to alpha-ketoglutarate permease KgtP [Escherichia coli]." "PS00217: Sugar transport proteins signature. 12 predicted transmembrane helices." "Aromatic compound catabolism" "PA0230" "3-carboxy-cis,cis-muconate cycloisomerase" "pcaB" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 259784.00 261163.00 93003135.00 "87% similar to 3-carboxy-cis,cis-muconate cycloisomerase [Pseudomonas putida]." "BL00163: Fumarate lyases proteins." "Aromatic compound catabolism" "PA0231" "beta-ketoadipate enol-lactone hydrolase" "pcaD" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 261179.00 261970.00 98250612.00 "63% similar to B-ketoadipate enol-lactone hydrolase [Bradyrhizobium japonicum]." "PR00111: Alpha/beta hydrolase fold signature. PR00412: Epoxide hydrolase signature." "Aromatic compound catabolism" "PA0232" "gamma-carboxymuconolactone decarboxylase" "pcaC" "Class 2" "Carbon compound catabolism" "Carbon compound catabolism" 261981.00 262382.00 "4.1.1.44" 87250286.00 "73253931; 87250286" "78% similar to gamma-carboxymuconolactone decarboxylase [Acinetobacter sp. ADP1]." "Cluster of genes in protocatechuate degradative pathway. Another cluster is about 100 kb away." "Aromatic compound catabolism" "PA0233" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 262557.00 263498.00 "61% similar to putative transcriptional regulator [Rhizobium leguminosarum bv. trifolii]." "PS00044: Bacterial regulatory protein, LysR family signature." "PA0234" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 263689.00 264522.00 "PA0235" "4-hydroxybenzoate transporter PcaK" "pcaK" "Class 2" "Transport of small molecules" "Carbon compound catabolism; Membrane proteins; Transport of small molecules" 266310.00 264964.00 95050205.00 "90% similar to 4-hydroxybenzoate transporter PcaK [Pseudomonas putida]." "PF00083: Sugar (and other) transporter. 12 predicted transmembrane helices." "Aromatic compound catabolism" "PA0236" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 266616.00 267395.00 "49% similar to repressor protein IclR [Escherichia coli]." "PS01051: Bacterial regulatory proteins, iclR family proteins." "PA0237" "probable oxidoreductase" "Class 3" "Putative enzymes" "Putative enzymes" 267638.00 268681.00 "~40% similar to numerous known and putative dehydrogenases from diverse bacteria." "PF01408: Oxidoreductase family" "PA0238" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 268704.00 269519.00 "PA0239" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 269669.00 270547.00 "45% similar to hypothetical protein [Rickettsia prowazekii]." "PF00892 Integral membrane protein (very weak). 10 predicted transmembrane domains." "PA0240" "probable porin" "opdF" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 271838.00 270573.00 90368779.00 "53% similar to porin E1 [Pseudomonas aeruginosa]." "PSORT: Seems to have a cleavable N-term signal seq. Possible cleavage site: 24" "PA0241" "probable MFS transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 273229.00 271904.00 "47% similar to hexuronate transporter ExuT [Escherichia coli]." "PF00083: Sugar (and other) transporter. 9 predicted transmembrane domains." "PA0242" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 273775.00 275679.00 "94156461; 92241278" "49% similar to 4-hydroxyphenylpyruvate dioxygenase [Pseudomonas sp. P.J. 874.]" "PA0243" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 275772.00 276440.00 "44% similar to putative transcriptional regulator [Methanobacterium thermoautotrophicum]." "PS01081: Bacterial regulatory proteins, tetR family proteins." "PA0244" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 277334.00 276480.00 "94347087" "47% similar to shikimate 5-dehydrogenase [Escherichia coli]; 49% similar to C terminal half of bifunctional dehydroquinate dehydratase/shikimate dehydrogenase [Nicotiana tabacum]" "Cluster of genes probably involved in carbon compound degradation" "PA0245" "3-dehydroquinate dehydratase" "dehydroquinase" "aroQ2" "aroD2" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 277777.00 277331.00 "4.2.1.10" 94224145.00 "72% similar to putative catabolic dehydroquinase [Pseudomonas aeruginosa]; 70% similar to 3-dehydroquinase AroQ [Actinobacillus pleuropneumoniae]" "PS01029: Dehydroquinase class II signature." "Phenylalanine, tyrosine and tryptophan biosynthesis" "PA0246" "probable MFS transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 279399.00 277894.00 "97175579" "57% similar to multidrug transporter Bmr3 [Bacillus subtilis]." "DM01123: . 14 predicted transmembrane domains" "PA0247" "p-hydroxybenzoate hydroxylase" "pobA" "Class 1" "Carbon compound catabolism" "Carbon compound catabolism" 280758.00 279574.00 "1.14.13.2" 89138003.00 "96140232" "PR00420: Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature." "Aromatic compound catabolism" "PA0248" "probable transcriptional regulator" "pobR" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 280936.00 281802.00 "87% similar to putative regulator PobR [Pseudomonas aeruginosa]." "PS00041: Bacterial regulatory proteins, araC family signature." "PA0249" "probable acetyltransferase" "Class 3" "Putative enzymes" "Putative enzymes" 282245.00 281799.00 "54% similar to hypothetical protein YiaC [Escherichia coli]" "PF00583: Acetyltransferase (GNAT) family." "PA0250" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 282757.00 282323.00 "60% similar to hypothetical protein Rv2406c [Mycobacterium tuberculosis]." "PF00571: CBS domain." "PA0251" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 283553.00 282912.00 "PA0252" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 284105.00 283818.00 "PA0253" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 284673.00 284197.00 "97221583" "55% similar to MarR regulator [Salmonella typhimurium]." "PS01117: Bacterial regulatory proteins, marR family signature." "PA0254" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 286204.00 284714.00 "58% similar to probable membrane protein YDR539w [Saccharomyces cerevisiae]." "PA0255" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 287024.00 286338.00 "65% similar to hypothetical protein [Sinorhizobium meliloti]." "PA0256" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 288120.00 287188.00 "PA0257" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Related to phage, transposon, or plasmid" 289175.00 288384.00 "98380392; 98013089" "51% similar to Hp1 [Escherichia coli]." "PD02455A: ELEMENT TRANSPOSABLE INSERTION PROTEIN TRANSPOSITION DNA." "PA0258" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 289390.00 289205.00 "PA0259" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 291004.00 289562.00 "PA0260" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Membrane proteins; Hypothetical, unclassified, unknown" 293304.00 291154.00 "Two predicted transmembrane domains." "PA0261" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 293798.00 293301.00 "PSORT predicted signal peptide." "PA0262" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 296861.00 293802.00 98361897.00 "N-terminal ~500 amino acids 56% similar to VgrG and VgrE proteins [Escherichia coli]" "PA0263" "secreted protein Hcp" "hcpC" "Class 2" "Secreted factors (toxins, enzymes, alginate)" "Secreted factors (toxins, enzymes, alginate)" 297561.00 297043.00 96110945.00 "98361897" "72 % similar to Hcp [Vibrio cholerae]; 69% similar to Hcp [Escherichia coli]" "PA0264" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 299497.00 299081.00 "PA0265" "succinate-semialdehyde dehydrogenase" "gabD" "Class 2" "Carbon compound catabolism" "Amino acid biosynthesis and metabolism; Carbon compound catabolism; Central intermediary metabolism" 299522.00 300973.00 "1.2.1.16" 94127927.00 "79172899" "90% similar to GabD gene product of E. coli" "Adjacent to gabT ORF" "PROSITE: PDOC00068 Aldehyde dehydrogenases active site" "Butanoate metabolism; Glutamate metabolism; Tyrosine metabolism" "PA0266" "4-aminobutyrate aminotransferase" "gabA transaminase" "gabT" "Class 2" "Carbon compound catabolism" "Amino acid biosynthesis and metabolism; Carbon compound catabolism; Central intermediary metabolism" 301218.00 302498.00 "2.6.1.19" 90179149.00 "91072256" "87% similar to GabT gene product of E. coli" "Adjacent to gabD ORF" "PROSITE: PDOC00519 Aminotransferases class-III pyridoxal-phosphate attachment site" "Alanine and Aspartate metabolism; Butanoate metabolism; Glutamate metabolism; Propanoate metabolism; Beta-Alanine metabolism" "PA0267" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 302824.00 304023.00 "0" "52% similar to putative chemotaxis protein CheY2 [Rhizobium meliloti]" "PF00072: Response regulator receiver domain (weak)" "PA0268" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 305598.00 304177.00 "55% similar to putative regulatory protein MocR [Rhizobium leguminosarum bv. viciae]." "PS00043: Bacterial regulatory proteins, gntR family signature." "PA0269" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 305725.00 306162.00 "63% similar to hypothetical protein YdfG [Bacillus subtilis]." "PA0270" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 306174.00 306581.00 "PA0271" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 306615.00 306899.00 "PA0272" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 307828.00 306896.00 "44% similar to MexT protein [Pseudomonas aeruginosa]." "PF00126/PS00044: Bacterial regulatory proteins, lysR family signature." "PA0273" "probable MFS transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 309092.00 307878.00 "58% similar to cyanate transport protein CynX [Escherichia coli]." "12 predicted transmembrane helices." "PA0274" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 310025.00 309255.00 "PSORT predicted signal peptide." "PA0275" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 310820.00 310134.00 "48% similar to hypothetical protein Rv3676 [Mycobacterium tuberculosis]." "PS00043: Bacterial regulatory proteins, gntR family signature." "PA0276" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 310896.00 311411.00 "91353083" "PA0277" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 312209.00 311451.00 "74% similar to hypothetical proteins YcaL [Escherichia coli] and YggG [Escherichia coli]." "PA0278" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 313133.00 312381.00 "PA0279" "probable transcriptional regulator" "ydfF" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 313227.00 313925.00 "59% similar to hypothetical protein YdfF [Bacillus subtilis]" "PS00846: Bacterial regulatory proteins, arsR family signature." "PA0280" "sulfate transport protein CysA" "cysA" "Class 2" "Transport of small molecules" "Transport of small molecules" 314927.00 313938.00 90264334.00 "71% similar to sulfate transport ATP-binding protein CysA [Escherichia coli]." "PS00211: ABC transporters family signature." "PA0281" "sulfate transport protein CysW" "cysW" "Class 2" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 315800.00 314931.00 90264334.00 "72% similar to sulfate/thiosulfate transport protein cysW [Escherichia coli]" "cysTWA (Ecoli)" "BL00402: Binding-protein-dependent transport systems inner membrane comp. sign. 6 predicted transmembrane helices." "PA0282" "sulfate transport protein CysT" "cysT" "Class 2" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 316629.00 315811.00 90264334.00 "71% similar to sulfate/thiosulfate transport protein CysT [Escherichia coli]." "cysTWA (Ecoli)" "BL00402: Binding-protein-dependent transport systems inner membrane comp. sign. 6 predicted transmembrane helices." "PA0283" "sulfate-binding protein precursor" "sulfate starvation-induced protein 2" "sbp" "Class 2" "Transport of small molecules" "Transport of small molecules" 317789.00 316791.00 96370830.00 "78% similar to periplasmic sulphate binding protein Sbp [Escherichia coli]." "BL00401: Prokaryotic sulfate-binding proteins signature 1." "PA0284" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 318148.00 317966.00 "PA0285" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 320594.00 318312.00 "C-terminal 500 amino acids are 59% similar to a region of putative nitrogen fixation positive activator protein [Synechocystis sp.]." "PF00990: Domain of unknown function. PF00563: Domain of unknown function 2. PF00785: Motif C-terminal to PAS motifs. PF00989: PAS domain. PSORT predicted signal peptide and 1 predicted transmembrane domain." "PA0286" "probable fatty acid desaturase" "Class 3" "Fatty acid and phospholipid metabolism" "Fatty acid and phospholipid metabolism" 320766.00 321944.00 "1.14.99.5" "85% similar to stearoyl-CoA desaturase [Azotobacter vinelandii]" "BL00476: Fatty acid desaturases family 1 signature." "PA0287" "probable sodium:solute symporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 322175.00 323560.00 "90299808" "46% similar to sodium/pantothenate symporter PanF [Escherichia coli]" "PS00456: Sodium:solute symporter family signature 1. 12 transmembrane helices predicted." "PA0288" "agmatinase" "agmatine ureohydrolase, AUH, proclavaminate amidino hydrolase, proclavaminic acid amidino hydrolase, PAH" "speB1" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 323616.00 324572.00 "3.5.3.11" 86139896.00 "94374706; 95325311" "58% similar to proclavaminate amidino hydrolase [Streptomyces clavuligerus]; 57% similar to speB gene product [E. coli]" "PF00491/PS00147: Arginase family signature 1." "Arginine and proline metabolism" "PA0289" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 324625.00 325587.00 "39% similar to LysR-type regulatory protein [Comamonas sp. JS765]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA0290" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 325700.00 326671.00 "96042099" "54% similar to C-terminus of PleD [Caulobacter crescentus]" "PF00990: Domain of unknown function" "PA0291" "outer membrane porin OprE precursor" "Porin E1" "oprE" "Class 1" "Transport of small molecules" "Membrane proteins" 327284.00 328666.00 93360827.00 "93360827; 98258025" "100% similar to protein E1 [Pseudomonas aeruginosa]" "PA0292" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 329907.00 328801.00 "63% similar to A638R [Paramecium bursaria Chlorella virus 1]" "PA0293" "probable hydratase" "Class 3" "Putative enzymes" "Putative enzymes" 330871.00 329993.00 "80% similar to putative beta-alanine synthetase [Arabidopsis thaliana]." "PS01227: Uncharacterized protein family UPF0012 signature. PS00920: Nitrilase /cyanide hydratase signature 1." "PA0294" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 331699.00 331034.00 "49% similar to putative transcriptional regulator [Streptomyces coelicolor]." "PS01081: Bacterial regulatory proteins, tetR family signature." "PA0295" "probable periplasmic polyamine binding protein" "Class 3" "Transport of small molecules" "Transport of small molecules" 332823.00 331762.00 "97061202" "57% similar to putrescine transport protein PotF [Escherichia coli]" "PR00909: Bacterial periplasmic spermidine/putrescine-binding protein signature." "PA0296" "probable glutamine synthetase" "Class 3" "Putative enzymes" "Putative enzymes" 334455.00 333079.00 "63% similar to putative glutamine synthetase YcjK [Escherichia coli]" "BL00180: Glutamine synthetase signature 1." "PA0297" "probable glutamine amidotransferase" "ycjL" "Class 3" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 334734.00 335486.00 "60% similar to YcjL probable amidotransferase subunit [Escherichia coli]" "Flanked by two ycjK homologs (homologous to B. subtilis glutamine synthase)" "PS00442: Glutamine amidotransferases class-I active site." "PA0298" "probable glutamine synthetase" "Class 3" "Putative enzymes" "Putative enzymes" 335527.00 336885.00 "50% similar to putative glutamine synthetase YcjK [Escherichia coli]" "BL00180: Glutamine synthetase signature 1." "PA0299" "probable aminotransferase" "Class 3" "Putative enzymes" "Putative enzymes" 336951.00 338321.00 "92316928" "53% similar to beta-alanine--pyruvate transaminase [Pseudomonas putida]" "BL00600: Aminotransferases class-III pyridoxal-phosphate attachment site." "PA0300" "polyamine transport protein" "potF2" "Class 2" "Transport of small molecules" "Transport of small molecules" 338437.00 339540.00 93106992.00 "74% similar to E. coli potF gene product." "clustered with potF3GHI" "PR00909: Bacterial periplasmic spermidine/putrescine-binding protein signature." "PA0301" "polyamine transport protein" "potF3" "Class 2" "Transport of small molecules" "Transport of small molecules" 339959.00 341056.00 93106992.00 "73% similar to E. coli potF gene product." "clustered with potF2GHI" "PR00909: Bacterial periplasmic spermidine/putrescine-binding protein signature." "PA0302" "polyamine transport protein PotG" "potG" "Class 2" "Transport of small molecules" "Transport of small molecules" 341111.00 342265.00 93106992.00 "74% similar to ATP-binding component of putrescine transport system PotG [Escherichia coli]." "clustered with potF2F3HI" "BL00211: ABC transporters family signature." "PA0303" "polyamine transport protein PotH" "potH" "Class 2" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 342292.00 343173.00 93106992.00 "83% similar to PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN PotH [Escherichia coli]" "clustered with potF2F3GI" "BL00402: Binding-protein-dependent transport systems inner membrane comp. sign. 6 predicted transmembrane helices." "PA0304" "polyamine transport protein PotI" "potI" "Class 2" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 343256.00 344125.00 93106992.00 "80% similar to putrescine transport system permease protein PotI [Escherichia coli]." "clustered with potF2F3GH" "BL00402: Binding-protein-dependent transport systems inner membrane comp. sign. 6 predicted transmembrane helices." "PA0305" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 346690.00 344303.00 92109664.00 "40% similar to PENICILLIN ACYLASE II PRECURSOR [Pseudomonas sp.]" "PA0306" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 346801.00 347853.00 "46% similar to transcriptional regulator PhbR [Pseudomonas sp. 61-3]" "PS00041: Bacterial regulatory proteins, araC family signature." "PA0307" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 349051.00 348440.00 "PA0308" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 349050.00 350069.00 "PA0309" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 350841.00 350089.00 "PA0310" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 350890.00 351588.00 "PA0311" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 352164.00 351610.00 "PA0312" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 352430.00 352924.00 "58% similar to hypothetical protein YbbK [Bacillus subtilis]." "PA0313" "probable permease of ABC transporter" "yecS" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 353619.00 352927.00 "67% similar to Escherichia coli putative transport system permease protein YecS." "4 predicted transmembrane helices. PF00528: Binding-protein-dependent transport systems inner membrane component." "PA0314" "probable binding protein component of ABC transporter" "fliY" "Class 3" "Transport of small molecules" "Transport of small molecules" 354461.00 353691.00 96370830.00 "58% similar to Escherichia coli FliY protein precursor." "BL01039: Bacterial extracellular solute-binding proteins, family 3 signature." "PA0315" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 354754.00 355191.00 "PA0316" "D-3-phosphoglycerate dehydrogenase" "serA" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 356477.00 355248.00 "1.1.1.95" 95236205.00 "95236205; 86304370" "80% similar to SerA gene product of E. coli" "PS00065: D-isomer specific 2-hydroxyacid dehydrogenases signature" "Glycine, serine and threonine metabolism" "PA0317" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 356681.00 358075.00 "53% similarity to Aip2 gene product of Saccharomyces cerevisiae." "PA0318" "conserved hypothetical protein" "hpcE" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Putative enzymes" 358167.00 358832.00 "68% similar to putative isomerase [Escherichia coli]. 59% similar to 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [Archaeoglobus fulgidus]. 57% similar to 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE) [Methanococcus jannaschii]" "PA0319" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 358931.00 359920.00 "PA0320" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 359982.00 360332.00 "57% similar to hypothetical protein YgiW [Escherichia coli]" "Predicted periplasmic location (PSORT)." "PA0321" "probable acetylpolyamine aminohydrolase" "Class 3" "Putative enzymes" "Putative enzymes" 361447.00 360413.00 89087434.00 "96422009" "67% similar to ACETYLPOLYAMINE AMINOHYDROLASE [Mycoplana ramosa]." "PF00850: Histone deacetylase family." "PA0322" "probable transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 362857.00 361463.00 "61% similar to putative amino acid/amine transport protein YcjJ [Escherichia coli]" "10 predicted transmembrane domains. PF00324: Amino acid permease." "PA0323" "probable binding protein component of ABC transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 364321.00 363278.00 "52% similar to transport protein PotF [Escherichia coli]." "PR00909: BACTERIAL PERIPLASMIC SPERMIDINE/PUTRESCINE-BINDING PROTEIN SIGNATURE" "PA0324" "probable permease of ABC transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 365157.00 364369.00 "68% similar to spermidine/putrescine transport system permease protein PotC [Escherichia coli]." "BL00402: Binding-protein-dependent transport systems inner membrane comp. motif. 6 predicted transmembrane helices." "PA0325" "probable permease of ABC transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 366083.00 365154.00 "63% similar to spermidine/putrescine transport system permease protein PotB [Escherichia coli]." "BL00402: Binding-protein-dependent transport systems inner membrane comp. motif. 6 predicted transmembrane helices." "PA0326" "probable ATP-binding component of ABC transporter" "Class 3" "Transport of small molecules" "Transport of small molecules" 367129.00 366080.00 "63% similar to Escherichia coli Putrescine transport ATP-binding protein PotG." "BL00211: ABC transporters family signature." "PA0327" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 367457.00 368422.00 "95334362" "PA0328" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 370405.00 368462.00 "92268080" "PA0329" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 371038.00 370706.00 "67% similar to hypothetical protein (b2080)[Escherichia coli] and 62% similar to Orf117 [Pseudomonas stutzeri]" "PA0330" "ribose 5-phosphate isomerase" "ribose 5-phosphate epimerase, phosphoriboisomerase" "rpiA" "Class 2" "Energy metabolism" "Energy metabolism" 371833.00 371162.00 "5.3.1.6" 93374859.00 "92011350" "78% similar to rpiA gene product of [E. coli]" "Carbon fixation; Pentose phosphate cycle" "PA0331" "threonine dehydratase, biosynthetic" "threonine deaminase" "ilvA1" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 372091.00 373605.00 "4.2.1.16" 88056322.00 "70% similar to threonine deaminase IlvA [Escherichia coli]." "PS00165: Serine/threonine dehydratases pyridoxal-phosphate attachment site." "Glycine, serine and threonine metabolism" "PA0332" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 373725.00 374192.00 "PA0333" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 374243.00 375514.00 "44% similar to putative epimerase/dehydratase WbiG [Burkholderia pseudomallei]." "PA0334" "probable MFS transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 377189.00 375951.00 "40% similar to tetracycline resistance protein [E. coli]" "9 predicted transmembrane domains." "PA0335" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 377892.00 377239.00 "52% similar to hypothetical protein Rv3661 [Mycobacterium tuberculosis]." "PA0336" "conserved hypothetical protein" "ygdP" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 378096.00 378575.00 "82% similar to putative invasion protein YgdP [Escherichia coli]." "PS00893: mutT domain signature." "PA0337" "phosphoenolpyruvate-protein phosphotransferase PtsP" "phosphotransferase system enzyme I" "ptsP" "Class 2" "Transport of small molecules" "Transport of small molecules" 378598.00 380877.00 "2.7.3.9" 98406029.00 "97128775" "92% similar to enzyme I [Azotobacter vinelandii] and 61% similar to PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE PTSP [Escherichia coli]" "PF00391/PS00370: PEP-utilizing enzymes phosphorylation site signature." "PA0338" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 380903.00 382033.00 "C-terminal half 50% similar to pleD gene product of [Synechocystis sp.] and other putative signal transducers." "PF00990: Domain of unknown function" "PA0339" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 382792.00 382037.00 "PA0340" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 382914.00 383717.00 "95350630" "57% similar to H. influenzae hypothetical protein HI0902." "7 predicted transmembrane helices." "PA0341" "prolipoprotein diacylglyceryl transferase" "lgt" "umpA" "Class 2" "Fatty acid and phospholipid metabolism" "Fatty acid and phospholipid metabolism; Translation, post-translational modification, degradation" 383727.00 384527.00 "2.4.99.-" 95204358.00 "96074310" "67% similar to E. coli lgt gene product." "Conserved position next to thyA gene." "7 predicted transmembrane helices." "PA0342" "thymidylate synthase" "thyA" "Class 2" "Nucleotide biosynthesis and metabolism" "Biosynthesis of cofactors, prosthetic groups and carriers; Nucleotide biosynthesis and metabolism" 384733.00 385527.00 "2.1.1.45" 83273723.00 "95223798" "83% similar to E. coli thymidylate synthase." "Folate biosynthesis; One carbon pool by folate; Pyrimidine metabolism" "PA0343" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 386351.00 385554.00 "45% similar to a region of hypothetical protein [Synechocystis sp.]." "PA0344" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 387765.00 386386.00 "PA0345" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Membrane proteins; Hypothetical, unclassified, unknown" 389143.00 387758.00 "41% similar to putative membrane protein [Synechococcus PCC7942]." "5 predicted transmembrane helices." "PA0346" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 389334.00 389696.00 "PSORT predicted signal peptide." "PA0347" "glycerophosphoryl diester phosphodiesterase, periplasmic" "glycerophosphodiester phosphodiesterase" "glpQ" "Class 2" "Fatty acid and phospholipid metabolism" "Fatty acid and phospholipid metabolism" 390884.00 389733.00 "3.1.4.2" 83213496.00 "91238712" "52% similar to GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE PERIPLASMIC PRECURSOR [Escherichia coli]" "PD01922: PROTEIN PHOSPHODIESTERASE HYDROLASE GLYCEROPHOSPHORYL DIESTER GLYCEROPHOSPHODIESTER PRECURSOR GLYCEROL METABOLISM CHROMOSOME" "Glycerolipid metabolism; Phospholipid degradation" "PA0348" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 391094.00 392188.00 "PSORT predicted signal peptide." "PA0349" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 392185.00 393225.00 "PSORT predicted signal peptide and 1 predicted transmembrane domain." "PA0350" "dihydrofolate reductase" "folA" "tmrA" "Class 2" "Biosynthesis of cofactors, prosthetic groups and carriers" "Biosynthesis of cofactors, prosthetic groups and carriers" 393308.00 393814.00 "1.5.1.3" 76062400.00 "91152037" "61% similar to dihydrofolate reductase type I [Escherichia coli]" "PF00186/PS00075: Dihydrofolate reductase signature." "Folate biosynthesis; One carbon pool by folate" "PA0351" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 394303.00 393830.00 "57% similar to conserved protein [Methanobacterium thermoautotrophicum]" "PS01269: Uncharacterized protein family UPF0025 signature." "PA0352" "probable transporter" "yicE" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 395827.00 394442.00 "91203811" "75% similar to putative transport protein YicE [Escherichia coli]" "PF00860/PS01116: Xanthine/uracil permeases family signature." "PA0353" "dihydroxy-acid dehydratase" "ilvD" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism; Biosynthesis of cofactors, prosthetic groups and carriers" 397895.00 396057.00 "4.2.1.9" 93315441.00 "88056322" "83% similar to dihydroxy-acid dehydrase [Escherichia coli]" "PF00920: Dehydratase family. PS00886: Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1." "Pantothenate and CoA biosynthesis; Valine, leucine and isoleucine biosynthesis" "PA0354" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 399420.00 398224.00 "57% similar to (AP000007) hypothetical protein [Pyrococcus horikoshii]" "PA0355" "protease PfpI" "pfpI" "Class 2" "Translation, post-translational modification, degradation" "Translation, post-translational modification, degradation" 400032.00 399493.00 96196168.00 "64% similar to intracellular proteinase I [Pyrococcus furiosus]" "PA0356" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 400248.00 401072.00 "PA0357" "formamidopyrimidine-DNA glycosylase" "mutM" "fpg" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 401131.00 401943.00 "3.2.2.23" 88082692.00 "93232071" "71% similar to formamidopyrimidine-DNA glycosylase [Escherichia coli]." "PF01149/PS01242: Formamidopyrimidine-DNA glycosylase signature." "PA0358" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 402020.00 402598.00 "PA0359" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 402681.00 403025.00 "PA0360" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 403295.00 404281.00 "PD02292: PROTEIN INTERGENIC REGION" "PA0361" "probable gamma-glutamyltranspeptidase precursor" "Class 3" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 406119.00 404386.00 "2.3.2.2" 87057040.00 "97018223; 93305254; 93051253; 96362161" "55% similar to gamma-Glu transpeptidase [Pseudomonas sp.] and 51% similar to gamma-glutamyltranspeptidase [Escherichia coli]" "PF01019/PS00462: Gamma-glutamyltranspeptidase signature. PSORT predicted signal peptide." "Glutathione metabolism" "PA0362" "ferredoxin [4Fe-4S]" "fdx1" "Class 2" "Energy metabolism" "Energy metabolism" 406498.00 406247.00 96328257.00 "97035244" "85% similar to ferredoxin [Chromatium vinosum]" "PS00198: 4Fe-4S ferredoxins, iron-sulfur binding region signature. (PF00037)" "PA0363" "phosphopantetheine adenylyltransferase" "PPAT" "coaD" "kdtB" "Class 2" "Central intermediary metabolism" "Central intermediary metabolism" 407098.00 406619.00 99410451.00 "91236744; 92250420" "80% similar to kdtB gene product of [E. coli]" "Not in operon with waaA (kdtA) as in E. coli." "PR01020: Lipopolysaccharide core biosynthesis protein signature. COG0669R: Predicted nucleotidyltransferases." "Pantothenate and CoA biosynthesis" "PA0364" "probable oxidoreductase" "Class 3" "Putative enzymes" "Putative enzymes" 408845.00 407250.00 "44% similar to hypothetical oxidoreductaseY4NJ of [Rhizobium sp. NGR234]" "PS00623: GMC oxidoreductases signature 1." "PA0365" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 409449.00 408901.00 "1-2 predicted transmembrane domains." "PA0366" "probable aldehyde dehydrogenase" "Class 3" "Putative enzymes" "Putative enzymes" 410934.00 409504.00 "98389649" "62% similar to calB of [Pseudomonas sp.]" "PS00687: Aldehyde dehydrogenases glutamic acid active site." "PA0367" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 411224.00 411871.00 "53% similar to hypothetical protein [Pseudomonas putida]." "PS01081: Bacterial regulatory proteins, tetR family signature." "PA0368" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 413327.00 412329.00 "55% similar to hypothetical protein YheT [Escherichia coli]" "PS01133: Uncharacterized protein family UPF0017 signature." "PA0369" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 413654.00 413364.00 "PA0370" "conserved hypothetical protein" "yhhF" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 414529.00 413933.00 "98% similar to hypothetical 21.7 kDa protein in ftsY 5' region [Pseudomonas aeruginosa]. 63% similar to YhhF hypothetical protein [Escherichia coli]" "3 ORFs 5' of ftsY" "PA0371" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 416016.00 414529.00 "97305956" "50% similar to HYPOTHETICAL ZINC PROTEASE-LIKE PROTEIN Y4WB [Rhizobium sp. NGR234]" "Downstream of the homolog for the adjacent gene (Y4WA) in Rhizobium sp." "PA0372" "probable zinc protease" "Class 3" "Putative enzymes" "Putative enzymes" 417406.00 416009.00 "97305956" "53% similar to HYPOTHETICAL ZINC PROTEASE Y4WA [Rhizobium sp. NGR234]" "Upstream of the homolog for the adjacent gene (Y4WB) in Rhizobium sp." "PS00143: Insulinase family, zinc-binding region signature." "PA0373" "signal recognition particle receptor FtsY" "cell division protein FtsY" "ftsY" "Class 2" "Protein secretion/export apparatus" "Protein secretion/export apparatus" 417527.00 418894.00 90279500.00 "97156021; 94252315" "67% similar to Escherichia coli ftsY gene product." "ftsYEX (Escherichia coli)" "BL00300: SRP54-type proteins GTP-binding domain signature" "PA0374" "cell division protein FtsE" "ftsE" "Class 2" "Cell division" "Cell division; Transport of small molecules" 418891.00 419562.00 99157600.00 "94316500" "73% similar to Escherichia coli cell division protein ftsE." "ftsYEX (Ecoli)" "BL00211: ABC transporters family signature." "PA0375" "cell division protein FtsX" "ftsX" "Class 2" "Cell division" "Cell division" 419562.00 420569.00 99157600.00 "94316500; 87089083" "53% similar to Escherichia coli cell division protein ftsX" "ftsYEX (Ecoli)" "4 predicted transmembrane helices." "PA0376" "sigma factor RpoH" "heat-shock sigma factor" "rpoH" "Class 1" "Transcriptional regulators" "Transcriptional regulators" 420683.00 421537.00 95212932.00 "100% similar to heat-shock sigma factor [Pseudomonas aeruginosa]" "PS00715: Sigma-70 factors family signature 1." "PA0377" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 421602.00 422207.00 "PA0378" "probable transglycosylase" "monofunctional biosynthetic peptidoglycan transglycosylase" "mgtA" "Class 3" "Cell wall / LPS / capsule" "Cell wall / LPS / capsule" 422943.00 422212.00 96228711.00 "68% similar to MONOFUNCTIONAL BIOSYNTHETIC PEPTIDOGLYCAN TRANSGLYCOSYLASE putative peptidoglycan enzyme [Escherichia coli]" "PF00912: Transglycosylase" "Peptideglycan biosynthesis" "PA0379" "conserved hypothetical protein" "ygdD" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 422980.00 423357.00 "56% similar to HYPOTHETICAL PROTEIN YgdD (HI1073) [Haemophilus influenzae Rd]" "PA0380" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 423460.00 423660.00 "60% similar to hypothetical protein [Porphyra purpurea]." "PA0381" "thiamine biosynthesis protein, thiazole moiety" "thiG" "Class 2" "Biosynthesis of cofactors, prosthetic groups and carriers" "Biosynthesis of cofactors, prosthetic groups and carriers" 423719.00 424516.00 93163063.00 "98037482" "64% similar to thiamin biosynthesis, thiazole moiety ThiG [Escherichia coli]" "Thiamine metabolism" "PA0382" "DNA mismatch repair protein MicA" "micA" "yggH" "Class 2" "DNA replication, recombination, modification and repair" "DNA replication, recombination, modification and repair" 424670.00 425341.00 91161503.00 "91161503" "74% similar to [micA] gene products [Escherichia coli]" "PA0383" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 425504.00 426850.00 "63% similar to (U10470) unknown [Pseudomonas fluorescens]" "PA0384" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 427120.00 426863.00 "PA0385" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 427505.00 427182.00 "PA0386" "probable oxidase" "yggW" "Class 3" "Putative enzymes" "Putative enzymes" 428740.00 427586.00 "69% similar to putative oxidase YggW [Escherichia coli]; 44% similar to oxygen independent coprophorphyrinogen III oxidase HemN [Escherichia coli]" "PD01498: OXIDASE BIOSYNTHESIS OXIDOREDUCTASE PORPHYRIN COPROPORPHYRINOGEN III COPROPORPHYRINOGENASE COPROGEN MAGNESIUM PROTEIN" "PA0387" "conserved hypothetical protein" "yggV" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 429454.00 428861.00 "70% similar to putative ribosomal protein YggV [Escherichia coli]" "PA0388" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 429870.00 429451.00 "PA0389" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 430622.00 430002.00 "PA0390" "homoserine O-acetyltransferase" "metX" "met2" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 431769.00 430630.00 "2.3.1.31" 97352700.00 "67% similar to homoserine O-acetyltransferase MetX [Leptospira meyeri]; 54% similar to homoserine O-acetyltransferase Met2 [Saccharomyces cerevisiae]" "Methionine metabolism; Sulfur metabolism" "PA0391" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 433825.00 431858.00 "PA0392" "conserved hypothetical protein" "yggT" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 434819.00 434226.00 "65% similar to HYPOTHETICAL PROTEIN IN PROC 3'REGION [Vibrio alginolyticus]" "Downstream of proC" "PA0393" "pyrroline-5-carboxylate reductase" "delta-1-pyrroline-5-carboxylate reductase" "proC" "Class 1" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 435651.00 434830.00 "1.5.1.2" 90185238.00 "91285432" "100% identical to delta-1-pyrroline-5-carboxylate reductase [Pseudomonas aeruginosa]" "PF01089/PS00521: Delta 1-pyrroline-5-carboxylate reductase signature." "Arginine and proline metabolism; Urea cycle and metabolism of amino groups" "PA0394" "conserved hypothetical protein" "yggS" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 436355.00 435663.00 "91285432" "100% identical to HYPOTHETICAL 24.5 KD PROTEIN IN PILT 5'REGION (ORF5) [Pseudomonas aeruginosa] and 68% similar to hypothetical protein YggS [Escherichia coli]" "Upstream of pilT" "PF01168/PS01211: Uncharacterized protein family UPF0001 signature." "PA0395" "twitching motility protein PilT" "type 4 fimbrial biogenesis protein PilT" "pilT" "Class 1" "Motility & attachment" "Motility & Attachment; Cell wall / LPS / capsule" 436570.00 437604.00 95157252.00 "91285432; 99307227; 93225810" "100% identical to twitching motility protein [Pseudomonas aeruginosa]" "Upstream of the pilU gene." "PF00437/PS00662: Bacterial type II secretion system protein E signature." "Pilin biosynthesis" "PA0396" "twitching motility protein PilU" "type 4 fimbrial biogenesis protein PilU" "pilU" "Class 1" "Motility & attachment" "Motility & attachment" 437782.00 438930.00 95157252.00 "99307227" "100% identical to pilU [Pseudomonas aeruginosa]; 62% similar to twitching motility protein PilT [Pseudomonas aeruginosa]" "Downstream of pilT" "PF00437/PS00662: Bacterial type II secretion system protein E signature." "Pilin biosynthesis" "PA0397" "probable cation efflux system protein" "czcD" "Class 3" "Transport of small molecules" "Transport of small molecules" 439837.00 438938.00 "90017477" "77% similar to CATION EFFLUX SYSTEM PROTEIN CZCD [Ralstonia eutropha]" "Not in the context of homologs of czcABC, RS as in R. eutropha" "PD01796: PROTEIN TRANSMEMBRANE COBALT ZINC CADMIUM CATION EFFLUX SYSTEM CZCD TRANSPORT" "PA0398" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 439991.00 440395.00 "PA0399" "cystathionine beta-synthase" "serine sulfhydrase, beta-thionase, methylcysteine synthase" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 440638.00 442011.00 "4.2.1.22" 94093551.00 "96181548" "53% similar to cysM2 putative cystathionine beta-synthase [Mycobacterium tuberculosis]; 53% similar to cystathionine beta-synthase [Homo sapiens]" "PF00291/PS00901: Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site." "Cysteine metabolism; Glycine, serine and threonine metabolism" "PA0400" "probable cystathionine gamma-lyase" "homoserine deaminase, homoserine dehydratase, cystine desulfhydrase, cysteine desulfhydrase, gamma-cystathionase, cystathionase" "metB metC" "Class 3" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 442008.00 443192.00 "81% similar to cystathionine gamma-lyase-like protein [Stenotrophomonas maltophilia]" "PS00868: Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. PF01053: Gamma-family Cys/Met metabolism PLP-dependent enzyme" "Cysteine metabolism; Glycine, serine and threonine metabolism; Methionine metabolism; Nitrogen metabolism; Selenoamino acid metabolism; Sulfur metabolism" "PA0401" "noncatalytic dihydroorotase-like protein" "pyrX, pyrC'" "Class 2" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 444690.00 443419.00 95204340.00 "100% identical to dihydroorotase-like protein [Pseudomonas aeruginosa] and 86% similar to aspartate carbamoyltransferase 44k noncatalytic chain dihydro-orotase [Pseudomonas putida]." "Downstream of pyrB and pyrR" "PF00744/PS00482: Dihydroorotase signature 1." "PA0402" "aspartate carbamoyltransferase" "aspartate transcarbamoylase" "pyrB" "Class 2" "Nucleotide biosynthesis and metabolism" "Amino acid biosynthesis and metabolism; Nucleotide biosynthesis and metabolism" 445691.00 444687.00 "2.1.3.2" 95204340.00 "94% similar to P. putida aspartate carbamoyltransferase." "Alanine and Aspartate metabolism; Pyrimidine metabolism" "PA0403" "transcriptional regulator PyrR" "uracil phosphoribosyltransferase PyrR" "pyrR" "Class 2" "Transcriptional regulators" "Nucleotide biosynthesis and metabolism; Transcriptional regulators" 446227.00 445715.00 "2.4.2.9" 95095982.00 "61% similar to uracil phosphoribosyltransferase PyrR [Bacillus subtilis]." "Upstream of pyrBC genes" "PS00103: Purine/pyrimidine phosphoribosyl transferases signature." "PA0404" "conserved hypothetical protein" "yqgF" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 446773.00 446339.00 "67% similar to HYPOTHETICAL PROTEIN YqgF [Escherichia coli]" "PA0405" "conserved hypothetical protein" "yqgE" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 447342.00 446773.00 "60% similar to HYPOTHETICAL PROTEIN YqgE [Escherichia coli]" "PA0406" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 448350.00 447391.00 "PA0415" "probable chemotaxis protein" "chpC" "Class 3" "Chemotaxis" "Chemotaxis" 462565.00 463071.00 "chpABCDE gene cluster" "Chemotaxis" "PA0416" "probable transcriptional regulator" "chpD" "Class 3" "Transcriptional regulators" "Chemotaxis; Transcriptional regulators" 463079.00 463873.00 "40% similar to regulatory protein mmsR [Pseudomonas aeruginosa] which is a member of the AraC/XylS family of transcriptional regulators" "chpABCDE gene cluster" "PF00165/PS00041: Bacterial regulatory proteins, araC family signature." "Chemotaxis" "PA0417" "probable chemotaxis protein" "chpE" "Class 3" "Chemotaxis" "Chemotaxis" 463949.00 464560.00 "chpABCDE gene cluster" "Chemotaxis" "PA0418" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 465983.00 464568.00 "PA0419" "conserved hypothetical protein" "yggJ" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 466740.00 466018.00 "63% similar to HYPOTHETICAL PROTEIN YggJ [Escherichia coli]" "PA0420" "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" "7,8-diamino-pelargonic acid aminotransferase DAPA aminotransferase" "bioA" "Class 2" "Biosynthesis of cofactors, prosthetic groups and carriers" "Biosynthesis of cofactors, prosthetic groups and carriers" 468236.00 466833.00 "2.6.1.62" 90236299.00 "71% similar to adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Bacillus sphaericus]" "PF00202/PS00600: Aminotransferases class-III pyridoxal-phosphate attachment site." "Biotin metabolism" "PA0421" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Putative enzymes" 468410.00 469900.00 "43% similar to monoamine oxidase B [Homo sapiens]." "PR00419: 3 components of Adrenodoxin reductase family signature" "PA0422" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 470081.00 470650.00 "78% similar to putative cytochrome [Escherichia coli]" "PA0423" "conserved hypothetical protein" "yceI" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 470662.00 471237.00 "84% similar to hypothetical protein YceI [Escherichia coli]" "PA0424" "multidrug resistance operon repressor MexR" "mexR" "Class 1" "Transcriptional regulators" "Transcriptional regulators" 471749.00 471306.00 97032826.00 "PF01047/PS01117: Bacterial regulatory proteins, marR family signature." "PA0425" "RND multidrug efflux membrane fusion protein MexA precursor" "mexA" "Class 1" "Antibiotic resistance and susceptibility" "Transport of small molecules; Antibiotic resistance and susceptibility" 472024.00 473175.00 96050722.00 "95058196; 96050722" "100% identical to MexA [Pseudomonas aeruginosa]" "Part of the mexAB-oprM operon." "PSORT: Lipoprotein Possible modific. site: 23 CRend: 7 Sequence Pattern: CGKS PS00017:ATP/GTP-binding site motif A (P-loop)" "PA0426" "RND multidrug efflux transporter MexB" "mexB" "Class 1" "Antibiotic resistance and susceptibility" "Membrane proteins; Transport of small molecules; Antibiotic resistance and susceptibility" 473191.00 476331.00 96050722.00 "95058196" "99% similar to MexB [Pseudomonas aeruginosa]" "Part of the mexAB-oprM operon." "PR00702/PF00873: ACRIFLAVIN RESISTANCE PROTEIN FAMILY SIGNATURE. PD01612: PROTEIN TRANSMEMBRANE TRANSPORT INNER MEMBRANE RESISTANCE" "PA0427" "outer membrane protein OprM precursor" "oprM" "Class 1" "Transport of small molecules" "Membrane proteins; Transport of small molecules; Antibiotic resistance and susceptibility" 476333.00 477790.00 97312458.00 "96050722; 96139560" "62% similar to outer membrane protein OprJ [Pseudomonas aeruginosa]" "Part of the mexAB-oprM operon." "PD02581: PROTEIN PLASMID NODULATION COBALT RESISTANCE TRANSPORT OUTER MEMBRANE" "PA0428" "probable ATP-dependent RNA helicase" "rhlE" "Class 3" "Transcription, RNA processing and degradation" "Transcription, RNA processing and degradation" 479805.00 477886.00 94312114.00 "99291044; 98418442" "68% similar to putative ATP-dependent RNA helicase RhlE [Escherichia coli]." "PF00270/PS00039: DEAD-box subfamily ATP-dependent helicases signature. PF00271: Helicases conserved C-terminal domain." "PA0429" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 481126.00 480056.00 "PA0430" "5,10-methylenetetrahydrofolate reductase" "metF" "Class 2" "Central intermediary metabolism" "Central intermediary metabolism; Amino acid biosynthesis and metabolism" 482068.00 481196.00 "1.7.99.5" 99121007.00 "87109056; 84041480" "57% similar to 5,10 methylenetetrahydrofolate reductase [Escherichia coli]" "DM01833: REDUCTASE METHYLENETETRAHYDROFOLATE FADH2 YPL023C." "Methionine metabolism; One carbon pool by folate; Methane metabolism" "PA0431" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 482665.00 482111.00 "PA0432" "S-adenosyl-L-homocysteine hydrolase" "adenosylhomocysteinase (adohcyase)" "sahH" "ahcY" "Class 2" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 484115.00 482706.00 "3.3.1.1" 87118240.00 "92335291; 94034925; 90087639" "68% similar to S-adenosyl-L-homocysteine hydrolase [Rattus norvegicus] and other eucaryotic homologs; 60% to 62% similar to adenosylhomocysteine hydrolase from [Mycobacterium tuberculosis][Roseobacter denitrificans] [Rhodobacter capsulatus] and [Rhodobacter sphaeroides]" "PF00670/PS00738: S-adenosyl-L-homocysteine hydrolase signature 1." "PA0433" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 484404.00 484838.00 "PA0434" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 484964.00 487156.00 "PF00593: TonB dependent receptor C-terminal region" "PA0435" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 487167.00 488645.00 "PA0436" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 488730.00 489350.00 "54% similar to putative tet operon regulator YcdC [Escherichia coli]." "PS01081: Bacterial regulatory proteins, tetR family signature." "PA0437" "cytosine deaminase" "codA" "Class 2" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 490658.00 489387.00 "3.5.4.1" 92349961.00 "86% similar to E. coli codA gene product." "Part of conserved codBA operon." "Pyrimidine metabolism" "PA0438" "cytosine permease" "codB" "Class 2" "Transport of small molecules" "Nucleotide biosynthesis and metabolism; Transport of small molecules" 491898.00 490648.00 92349961.00 "87% similar to E. coli codB gene product." "Part of conserved codBA operon." "11 predicted transmembrane helices." "PA0439" "probable oxidoreductase" "yeiA dypB" "Class 3" "Putative enzymes" "Putative enzymes" 493357.00 492080.00 "94365020" "59% similar to putative oxidoreductase YeiA [Escherichia coli]; 53% similar to dihydropyrimidine dehydrogenase [Rattus norvegicus]" "With the adjacent gene, may encode a two-component oxidoreductase." "PS00198: 4Fe-4S ferredoxins, iron-sulfur binding region signature." "PA0440" "probable oxidoreductase" "dypA" "Class 3" "Putative enzymes" "Putative enzymes" 494721.00 493354.00 "97345887" "63% similar to NADPH dependent glutamate synthase small subunit homolog [Rhodobacter capsulatus]" "With the adjacent gene, may encode a two-component oxidoreductase." "PR00419: Adrenodoxin reductase family signature" "PA0441" "dihydropyrimidinase" "(DHPase), D-hydantoinase, 5,6-dihydropyrimidine amidohydrolase" "hyuA, dht" "Class 2" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 496255.00 494816.00 "3.5.2.2" 98094243.00 "94213464; 91244138" "95% similar to D-hydantoinase [Pseudomonas putida]" "Homologs of all three enzymes from the dihydropyrimidine reductive catabolic pathway and a probable allantoin/uracil permease are located in a cluster at this locus." "PF00744: Dihydooratase-like" "Pantothenate and CoA biosynthesis; Pyrimidine metabolism; Beta-Alanine metabolism" "PA0442" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 496478.00 496362.00 "PA0443" "probable transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 496871.00 498361.00 "56% similar to YwoE hypothetical permease [Bacillus subtilis]" "This probable permease is located in a cluster of gene coding for enzymes in the dihydropyrimidine reductive catabolic pathway." "PD01825: TRANSPORT TRANSMEMBRANE PROTEIN PERMEASE PUTATIVE ALLANTOIN TRANSPORTER THIAMINE METABOLISM PURINE" "PA0444" "N-carbamoyl-beta-alanine amidohydrolase" "hydantoinase" "hyuC" "Class 2" "Nucleotide biosynthesis and metabolism" "Nucleotide biosynthesis and metabolism" 498420.00 499703.00 92121137.00 "91244138" "55% similar to DL-hydantoinase (N-carbamyl-L-amino acid amidohydrolase) [Pseudomonas sp.]" "PD00794: HYDROLASE PROTEIN DIPEPTIDASE BIOSYNTHESIS AMIDOHYDROLASE ZINC ACID COBALT CARBOXYPEPTIDASE METALLOPROTEASE" "Pyrimidine metabolism" "PA0445" "probable transposase" "Class 3" "Related to phage, transposon, or plasmid" "Related to phage, transposon, or plasmid" 501120.00 500104.00 "92380927" "65% similar to transposase for insertion sequence element IS1111a [Coxiella burnetii]." "PA0446" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 502599.00 501376.00 "68% similar to an unknown protein from [Sphingomonas aromaticivorans]" "PA0407" "glutathione synthetase" "GSH-II" "gshB" "Class 2" "Biosynthesis of cofactors, prosthetic groups and carriers" "Amino acid biosynthesis and metabolism; Biosynthesis of cofactors, prosthetic groups and carriers" 449384.00 448431.00 "6.3.2.3" 85054419.00 "88298832" "75% similar to glutathione synthetase (GSH-II) [Escherichia coli]" "PD02939: PROTEIN GLUTATHIONE SYNTHETASE SYNTHASE GSH GSH-S BIOSYNTHESIS LIGASE ATP-BINDING RIBOSOMAL" "Glutamate metabolism; Glutathione metabolism" "PA0408" "twitching motility protein PilG" "type 4 fimbrial biogenesis protein PilG" "pilG" "Class 1" "Motility & attachment" "Chemotaxis; Two-component regulatory systems; Motility & Attachment" 449639.00 450046.00 93388525.00 "97113801; 97368113" "62% similar to regulatory components of sensory transduction system [Synechocystis sp.]" "Part of the pilGHIJKL gene cluster" "PF00486: Transcriptional regulatory protein, C terminal. PF00072: Response regulator receiver domain" "Pilin biosynthesis; Two-component System; Chemotaxis" "PA0409" "twitching motility protein PilH" "type 4 fimbrial biogenesis protein PilH" "pilH" "Class 1" "Motility & attachment" "Chemotaxis; Two-component regulatory systems; Motility & Attachment" 450093.00 450458.00 94195101.00 "97368113; 97113801" "63% similar to regulatory components of sensory transduction system and chemotaxis protein CheY [Synechocystis sp.]" "Part of the pilGHIJKL gene cluster" "PF00486: Transcriptional regulatory protein, C terminal. PF00072: Response regulator receiver domain" "Pilin biosynthesis; Two-component System; Chemotaxis" "PA0410" "twitching motility protein PilI" "type 4 fimbrial biogenesis protein PilI" "pilI" "Class 1" "Motility & attachment" "Motility & Attachment; Chemotaxis" 450509.00 451045.00 94195101.00 "97368113; 97113801" "48% similar to purine-binding chemotaxis protein (cheW)[Helicobacter pylori] and FrzA protein [Myxococcus xanthus]" "Part of the pilGHIJKL gene cluster" "DM01794: CHEMOTAXIS CHEW PROTEIN." "Chemotaxis; Pilin biosynthesis" "PA0411" "twitching motility protein PilJ" "type 4 fimbrial biogenesis protein PilJ" "pilJ" "Class 1" "Motility & attachment" "Motility & Attachment; Chemotaxis" 451130.00 453178.00 94195101.00 "97368113; 97113801" "59% similar to methyl-accepting chemotaxis protein I [Synechocystis sp.]" "Part of the pilGHIJKL gene cluster" "PF00015: Methyl-accepting chemotaxis protein (MCP) signaling domain BL00538: Bacterial chemotaxis sensory transducers signature." "Chemotaxis; Pilin biosynthesis" "PA0412" "methyltransferase PilK" "type 4 fimbrial biogenesis protein PilK" "pilK" "Class 1" "Motility & attachment" "Motility & Attachment; Chemotaxis" 453239.00 454114.00 "2.1.1.80" 95302983.00 "97113801; 97368113" "48% similar to chemotaxis protein methyltransferase CheR [Escherichia coli]" "Part of the pilGHIJKL gene cluster" "DM01855: PROTEIN-GLUTAMATE O-METHYLTRANSFERASE" "Chemotaxis; Pilin biosynthesis" "PA0413" "still frameshift probable component of chemotactic signal transduction system" "pilL chpA" "Class 3" "Chemotaxis" "Motility & Attachment; Chemotaxis; Two-component regulatory systems" 454126.00 461544.00 "97113801" "99% similar to PilL [Pseudomonas aeruginosa]; C-terminal half is 51% similar to chemotaxis protein CheA [Synechocystis sp.]" "pilGHIJKL gene cluster; chpABCDE gene cluster" "PF00072: Response regulator receiver domain" "Chemotaxis; Pilin biosynthesis; Two-component System" "PA0414" "probable methylesterase" "chpB" "Class 3" "Chemotaxis" "Chemotaxis" 461537.00 462568.00 "45% similar to CheB [Pseudomonas putida]" "chpABCDE gene cluster" "PF01339: CheB methylesterase" "Chemotaxis" "PA1199" "probable lipoprotein" "Class 3" "Membrane proteins" "Membrane proteins" 1300258.00 1300791.00 "92129331" "69% similar to putative lipoprotein YdhO [Escherichia coli]." "The adjacent gene also encodes a probable lipoprotein, with 60% similarity to this one." "PF00877: NLP/P60 family. The function of this domain is unknown. It is found in several lipoproteins." "PA1200" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1300811.00 1301473.00 "67% similar to unknown [Legionella pneumophila]; 66% similar to putative O-methyltransferase [Myxococcus xanthus]" "PA1201" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 1302395.00 1301481.00 "60% similar to putative transcriptional regulator [Synechocystis sp.]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA1202" "probable hydrolase" "ycaC" "Class 3" "Putative enzymes" "Putative enzymes" 1302696.00 1303313.00 98455514.00 "84% similar to YcaC protein of [E. coli]" "PF00857: Isochorismatase family" "PA1203" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1303457.00 1303864.00 "PA1204" "conserved hypothetical protein" "yieF" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1303892.00 1304449.00 "97426617" "59% similar to YieF, hypothetical 20.4 kD protein in tnaB-bglB intergenic region [Escherichia coli]" "PA1205" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1304476.00 1305423.00 "97236804" "62% similar to putative pirin [Ralstonia eutropha]--homology limited to N terminus of each orf; 44% similar to full length of pirin [Homo sapiens]" "PA1206" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1305583.00 1306056.00 "PA1207" "glutathione-regulated potassium-efflux system protein KefB" "kefB" "kefC trkB" "Class 2" "Transport of small molecules" "Transport of small molecules" 1306059.00 1307900.00 95020661.00 "87279929" "64% similar to GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN KEFB (K(+)/H(+) ANTIPORTER) [Escherichia coli]; 62% similar to glutathione-regulated potassium efflux system protein KefC [Escherichia coli]" "PR00335: TrkA potassium uptake protein signature" "PA1208" "conserved hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1308067.00 1309566.00 "86% similar to hypothetical protein Rv3854c [Mycobacterium tuberculosis]" "PF00743: Flavin-binding monooxygenase-like (weak)." "PA1209" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown; Membrane proteins" 1310518.00 1309583.00 "PF00597: DedA family. 4-5 predicted transmembrane domains." "PA1210" "conserved hypothetical protein" "yhhW" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1311386.00 1310688.00 "97426617" "61% similar to hypothetical protein YhhW [E. coli]; 57% similar to hypothetical protein [Synechocystis sp.]" "PA1211" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1312139.00 1311504.00 "PA1212" "probable MFS transporter" "Class 3" "Transport of small molecules" "Membrane proteins; Transport of small molecules" 1313365.00 1312136.00 "49% similar to hypothetical protein YqjV [Bacillus subtilis]." "10 predicted transmembrane helices." "PA1213" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1314321.00 1313362.00 "One predicted transmembrane domain." "PA1214" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1315916.00 1314318.00 "37% similar to putative glutamine amidotransferase (asparagine synthetase) [Bordetella bronchiseptica]" "PS00443: Glutamine amidotransferases class-II (very weak)" "PA1215" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1317202.00 1315916.00 "40% similar to a region of polyketide synthase [Amycolatopsis mediterranei]." "PS00455: Putative AMP-binding domain signature." "PA1216" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1318150.00 1317404.00 "46% similar to hypothetical protein [Staphylococcus aureus]." "PA1217" "probable 2-isopropylmalate synthase" "Class 3" "Amino acid biosynthesis and metabolism" "Amino acid biosynthesis and metabolism" 1319514.00 1318147.00 "4.1.3.12" "93015710" "54% similar to hypothetical 2-isopropylmalate synthase [Pyrococcus horikoshii]; 51% similar to LeuA [Lactococcus lactis]" "No other genes in vicinity are likely to be involved in amino acid synthesis" "PS00815: Alpha-isopropylmalate and homocitrate synthases signature 1." "Pyruvate metabolism; Valine, leucine and isoleucine biosynthesis" "PA1218" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1320389.00 1319511.00 "PA1219" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1321000.00 1320386.00 "PA1220" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1322256.00 1320994.00 "34% similar to a region of dihydroaeruginoic acid synthetase; peptide synthetase [Pseudomonas aeruginosa]." "PA1221" "hypothetical protein" "Class 4" "Hypothetical, unclassified, unknown" "Hypothetical, unclassified, unknown" 1324109.00 1322253.00 "49% similar to actinomycin synthetase II [Streptomyces chrysomallus]" "PF00501: AMP-binding enzyme." "PA1222" "probable membrane-bound lytic murein transglycolase A" "mltA" "Class 3" "Cell wall / LPS / capsule" "Cell wall / LPS / capsule" 1325950.00 1324793.00 97431497.00 "94117367" "46% similar to membrane-bound lytic murein transglycosylase A MltA [Escherichia coli]" "PA1223" "probable transcriptional regulator" "Class 3" "Transcriptional regulators" "Transcriptional regulators" 1326939.00 1326046.00 "53% similar to regulator SyrM1 [Rhizobium sp. NGR234]." "PS00044: Bacterial regulatory proteins, lysR family signature." "PA1224" "probable NAD(P)H dehydrogenase" "Class 3" "Putative enzymes"