BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0001 (514 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.319 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,696,313 Number of Sequences: 33869 Number of extensions: 547096 Number of successful extensions: 1386 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1386 Number of HSP's gapped (non-prelim): 0 length of query: 514 length of database: 16,881,503 effective HSP length: 106 effective length of query: 408 effective length of database: 13,291,389 effective search space: 5422886712 effective search space used: 5422886712 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 107 (45.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0002 (367 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.319 0.137 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,693,519 Number of Sequences: 33869 Number of extensions: 415193 Number of successful extensions: 810 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 810 Number of HSP's gapped (non-prelim): 0 length of query: 367 length of database: 16,881,503 effective HSP length: 103 effective length of query: 264 effective length of database: 13,392,996 effective search space: 3535750944 effective search space used: 3535750944 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0003 (369 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,918,191 Number of Sequences: 33869 Number of extensions: 490294 Number of successful extensions: 1345 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1345 Number of HSP's gapped (non-prelim): 0 length of query: 369 length of database: 16,881,503 effective HSP length: 103 effective length of query: 266 effective length of database: 13,392,996 effective search space: 3562536936 effective search space used: 3562536936 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0004 (806 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000342944 pep:known chromosome:NCBI35:17:35799297:35827569... 110 6e-24 ENSP00000264331 pep:novel chromosome:NCBI35:3:25614479:25680792:... 105 2e-22 ENSP00000350217 pep:known chromosome:NCBI35:17:35799297:35827695... 100 9e-21 ENSP00000269577 pep:known chromosome:NCBI35:17:35798327:35827695... 84 6e-16 >ENSP00000342944 pep:known chromosome:NCBI35:17:35799297:35827569:-1 gene:ENSG00000131747 transcript:ENST00000348049 Length = 1553 Score = 110 bits (274), Expect = 6e-24 Identities = 163/732 (22%), Positives = 293/732 (40%), Gaps = 98/732 (13%) Query: 37 GLHHMVFEVVDNSIDEALAG-YCSEISITIHTDES-ITVRDNGRGIPVDIHKEEGVSAAE 94 GL+ + E++ N+ D S I +TI + + I++ +NG+GIPV HK E + Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPA 139 Query: 95 VIMTVLHAGGKFDDNTYKXXXXXXXXXXXXXNALSHELRLTI--RRHNKVWEQVYHHGVP 152 +I L +DD+ K N S + + R + K+++Q + + Sbjct: 140 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMG 199 Query: 153 QFPLREVGETDGSG-TEVHFKPSPETFSNIHFSWDILAKRIR---ELSFLNSGVGILLRD 208 + E+ +G T + F+P F DI+A +R +++ V + L Sbjct: 200 RAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNG 259 Query: 209 ERTGKEELFKYEGGLKAFVE-YLNTNKTAVNEVFH-FNVQREEDGVGVEVALQWNDSFNE 266 + + G +++V+ YL K ++E + V E+ EV L ++ + Sbjct: 260 NKLPVK-------GFRSYVDMYL---KDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQ 309 Query: 267 NLLCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIIS 326 + F N+I GG H+ + L + ++ + K +A + + ++ Sbjct: 310 QI-SFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVN 365 Query: 327 VKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYF-------ADFLLE--------NPNEAK 371 + +P F SQTK+ + ++ + F + FL++ N Sbjct: 366 ALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFIKAAHLYSRFLIDPFFPNMIPNMFSFS 425 Query: 372 AVVGKMIDXXXXXXXXXXXXXXXXXXGALD---IAGLPGKLADCQE---KDPALSELYIV 425 A+ +++ A+ I G+P KL D + ++ L + Sbjct: 426 AIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIP-KLDDANDAGGRNSTECTLILT 484 Query: 426 EGDSAGGSAKQGRN---RRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGR 482 EGDSA A G R + PL+GKILNV +A +++ + E+ +I +G + Sbjct: 485 EGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKK 544 Query: 483 ---EEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKV 539 +E ++ LRY I+IMTD D DGSHI+ LL+ F P L+ ++ P+ KV Sbjct: 545 NYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKV 604 Query: 540 KRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIATLKRL 599 + KQE EE+ + + + V Y+G+ + + Sbjct: 605 SKNKQEMAFYSLPEFEEWKSSTPNHK-----------------KWKVKYYKGLGTSTSKE 647 Query: 600 SRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTAAEKSGLTYKASLREDRER 659 ++ Y ++ H I +D A S F + K LT + EDR + Sbjct: 648 AKEYFADMKRHRIQFKYSGPEDDAAISL------AFSKKQIDDRKEWLT---NFMEDRRQ 698 Query: 660 H--LWLPEVELVAHGLSSYVTFNRD-------FFASNDYRSVSLLGDQLNSLLEDGAYVQ 710 L LPE L ++Y+T+N F S++ RS+ + D L + Sbjct: 699 RKLLGLPEDYLYGQ-TTTYLTYNDFINKELILFSNSDNERSIPSMVDGL----------K 747 Query: 711 KGERKRPISAFK 722 G+RK + FK Sbjct: 748 PGQRKVLFTCFK 759 >ENSP00000264331 pep:novel chromosome:NCBI35:3:25614479:25680792:-1 gene:ENSG00000077097 transcript:ENST00000264331 Length = 1626 Score = 105 bits (261), Expect = 2e-22 Identities = 119/527 (22%), Positives = 214/527 (40%), Gaps = 38/527 (7%) Query: 37 GLHHMVFEVVDNSIDEALAGY---CSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAA 93 GL+ + E++ N+ D C ++SI ++ I++ +NG+GIPV HK E V Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESN-IISIWNNGKGIPVVEHKVEKVYVP 159 Query: 94 EVIMTVLHAGGKFDDNTYKXXXXXXXXXXXXXNALSHELRL--TIRRHNKVWEQVYHHGV 151 +I L +DD+ K N S + + + + ++Q + + + Sbjct: 160 ALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNM 219 Query: 152 PQFPLREVGETDGSG-TEVHFKPSPETFSNIHFSWDILA---KRIRELSFLNSGVGILLR 207 + ++ DG T + F+P F DI+A +R +L+ GV ++ Sbjct: 220 MKTSEAKIKHFDGEDYTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFN 279 Query: 208 DERTGKEELFKYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNEN 267 ++ G +++V+ +K V V E +V L ++ + Sbjct: 280 GKKLPVN-------GFRSYVDLYVKDKLDETGVA-LKVIHELANERWDVCLTLSEKGFQQ 331 Query: 268 LLCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISV 327 + F N+I GG H+ + + + IE K ++ + + I+ Sbjct: 332 I-SFVNSIATTKGGRHVD---YVVDQVVGKLIEVVKKKNKAGVSVKPFQVKNHIWVFINC 387 Query: 328 KVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDXXXXXXXX 387 + +P F SQTK+ + + ++ + F + + + I Sbjct: 388 LIENPTFDSQTKENMTLQPKSFGSKCQLSEKFFKAA------SNCGIVESILNWVKFKAQ 441 Query: 388 XXXXXXXXXXGALDIAGLPGKLADCQE---KDPALSELYIVEGDSAGGSAKQGRN---RR 441 I G+P KL D + K L + EGDSA A G R Sbjct: 442 TQLNKKCSSVKYSKIKGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRD 500 Query: 442 TQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGR---EEYNIDKLRYHNIIIM 498 + PL+GKILNV +A +++ + E+ +I +G + + ++ LRY I+IM Sbjct: 501 RYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIM 560 Query: 499 TDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRGKQE 545 TD D DGSHI+ LL+ F P L++ G++ P+ K + KQE Sbjct: 561 TDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQE 607 >ENSP00000350217 pep:known chromosome:NCBI35:17:35799297:35827695:-1 gene:ENSG00000131747 transcript:ENST00000357601 Length = 1563 Score = 99.8 bits (247), Expect = 9e-21 Identities = 168/748 (22%), Positives = 286/748 (38%), Gaps = 120/748 (16%) Query: 37 GLHHMVFEVVDNSIDEALAG-YCSEISITIHTDES-ITVRDNGRGIPVDIHKEEGVSAAE 94 GL+ + E++ N+ D S I +TI + + I++ +NG+GIPV HK E + Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPA 139 Query: 95 VIMTVLHAGGKFDDNTYKXXXXXXXXXXXXXNALSHELRLTI--RRHNKVWEQVYHHGVP 152 +I L +DD+ K N S + + R + K+++Q + + Sbjct: 140 LIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMG 199 Query: 153 QFPLREVGETDGSG-TEVHFKPSPETFSNIHFSWDILAKRIRELS-----------FLN- 199 + E+ +G T + F+P F DI+A +R FLN Sbjct: 200 RAGEMELKPFNGEDYTCITFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNG 259 Query: 200 ---------SGVGILLRD--ERTGKEELFKYEG-----------GLKAFVEYLNTNKTAV 237 S V + L+D + TG +E K F + N A Sbjct: 260 NKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIAT 319 Query: 238 NEVFHFNVQREEDGVGVEVA-LQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLN 296 ++V F + V + L + N L FT GG H+ + L Sbjct: 320 SKVILFLNYMIYLYIYVFLLFLIYKVDLNIGLAYFT-------GGRHVDYVADQIVTKLV 372 Query: 297 NYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMG 356 + ++ + K +A + + ++ + +P F SQTK+ + ++ Sbjct: 373 DVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLS 429 Query: 357 KYFADFLLENPNEAKAVVG-KMIDXXXXXXXXXXXXXXXXXXGALD---IAGLPGKLADC 412 + F KA +G +++ A+ I G+P KL D Sbjct: 430 EKFI----------KAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIP-KLDDA 478 Query: 413 QE---KDPALSELYIVEGDSAGGSAKQGRN---RRTQAILPLKGKILNVEKARFDKMLSS 466 + ++ L + EGDSA A G R + PL+GKILNV +A +++ + Sbjct: 479 NDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMEN 538 Query: 467 QEVGTLITALGCGIGR---EEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPEL 523 E+ +I +G + +E ++ LRY I+IMTD D DGSHI+ LL+ F P L Sbjct: 539 AEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSL 598 Query: 524 IERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALE 583 + ++ P+ KV + KQE EE+ + + + Sbjct: 599 LRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHK-----------------K 641 Query: 584 KLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTAAE 643 V Y+G+ + + ++ Y ++ H I +D A S F + Sbjct: 642 WKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISL------AFSKKQIDDR 695 Query: 644 KSGLTYKASLREDRERH--LWLPEVELVAHGLSSYVTFNRD-------FFASNDYRSVSL 694 K LT + EDR + L LPE L ++Y+T+N F S++ RS+ Sbjct: 696 KEWLT---NFMEDRRQRKLLGLPEDYLYGQ-TTTYLTYNDFINKELILFSNSDNERSIPS 751 Query: 695 LGDQLNSLLEDGAYVQKGERKRPISAFK 722 + D L + G+RK + FK Sbjct: 752 MVDGL----------KPGQRKVLFTCFK 769 >ENSP00000269577 pep:known chromosome:NCBI35:17:35798327:35827695:-1 gene:ENSG00000131747 transcript:ENST00000269577 Length = 1609 Score = 83.6 bits (205), Expect = 6e-16 Identities = 90/339 (26%), Positives = 144/339 (42%), Gaps = 56/339 (16%) Query: 402 IAGLPGKLADCQE---KDPALSELYIVEGDSAGGSAKQGRN---RRTQAILPLKGKILNV 455 I G+P KL D + ++ L + EGDSA A G R + PL+GKILNV Sbjct: 515 IKGIP-KLDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNV 573 Query: 456 EKARFDKMLSSQEVGTLITALGCGIGR---EEYNIDKLRYHNIIIMTDADVDGSHIRTLL 512 +A +++ + E+ +I +G + +E ++ LRY I+IMTD D DGSHI+ LL Sbjct: 574 REASHKQIMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLL 633 Query: 513 LTFFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNE 572 + F P L+ ++ P+ KV + KQE EE+ + + Sbjct: 634 INFIHHNWPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHK------- 686 Query: 573 HAPGLSGAALEKLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWL 632 + V Y+G+ + + ++ Y ++ H I +D A S Sbjct: 687 ----------KWKVKYYKGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISL----- 731 Query: 633 EKFQARLTAAEKSGLTYKASLREDRERH--LWLPEVELVAHGLSSYVTFNRD-------F 683 F + K LT + EDR + L LPE L ++Y+T+N F Sbjct: 732 -AFSKKQIDDRKEWLT---NFMEDRRQRKLLGLPEDYLYGQ-TTTYLTYNDFINKELILF 786 Query: 684 FASNDYRSVSLLGDQLNSLLEDGAYVQKGERKRPISAFK 722 S++ RS+ + D L + G+RK + FK Sbjct: 787 SNSDNERSIPSMVDGL----------KPGQRKVLFTCFK 815 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.316 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,616,808 Number of Sequences: 33869 Number of extensions: 1074552 Number of successful extensions: 2390 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2371 Number of HSP's gapped (non-prelim): 14 length of query: 806 length of database: 16,881,503 effective HSP length: 110 effective length of query: 696 effective length of database: 13,155,913 effective search space: 9156515448 effective search space used: 9156515448 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 109 (46.6 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0005 (257 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000337463 pep:known-ccds chromosome:NCBI35:6:32243970:3225... 81 1e-15 ENSP00000312239 pep:known-ccds chromosome:NCBI35:9:136843433:136... 74 1e-13 ENSP00000352899 pep:known chromosome:NCBI35:9:136843433:13685764... 74 1e-13 >ENSP00000337463 pep:known-ccds chromosome:NCBI35:6:32243970:32253820:-1 gene:ENSG00000168448 transcript:ENST00000336984 CCDS4744.1 Length = 283 Score = 80.9 bits (198), Expect = 1e-15 Identities = 74/231 (32%), Positives = 106/231 (45%), Gaps = 11/231 (4%) Query: 20 AFVWGTLSFFIAPILPFRARYRFVVQNWCRFAIWLTRV--VAGIRYEVRGLENIP-EKPC 76 AF G + F +P A V+N + L + + GIR EVRG + P +P Sbjct: 39 AFYNGWILFLAVLAIPVCAVRGRNVENMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPY 98 Query: 77 VILSKHQSTWETFFLSGFFEPLS----QVLKRELLYVPFFGWALALLKPIAIDRSQPKLA 132 V++S HQS+ + L G E L + KRELL+ G A L I IDR + A Sbjct: 99 VVVSNHQSSLD---LLGMMEVLPGRCVPIAKRELLWAGSAGLACWLAGVIFIDRKRTGDA 155 Query: 133 LKQLAKQGDECLKKGAWVLIFPEGTRIPVGQMGKFSRGGTALAVNAGLPVLPIAHNAGQ- 191 + +++ L + V +FPEGTR G M F RG LAV A +P++PI ++ Q Sbjct: 156 ISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVMSSYQD 215 Query: 192 YWPKAGWAKYPGTIQVVIGPAMHAEGEGPRAIAELNQRAEAWVSETMAEIS 242 ++ K G QV + P + EG P + L R + EIS Sbjct: 216 FYCKKERRFTSGQCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREIS 266 >ENSP00000312239 pep:known-ccds chromosome:NCBI35:9:136843433:136857712:-1 gene:ENSG00000169692 transcript:ENST00000308956 CCDS7003.1 Length = 278 Score = 73.9 bits (180), Expect = 1e-13 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 60 GIRYEVRGLENIPE-KPCVILSKHQSTWETFFLSGFF-EPLSQVLKRELLYVPFFGWALA 117 G+R+EVR + E +PCVI+S HQS + L E Q+ KRELL++ G + Sbjct: 75 GLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAKRELLFLGPVGLIMY 134 Query: 118 LLKPIAIDRSQPKLALKQLAKQGDECLKKGAWVLIFPEGTRIPVGQMGKFSRGGTALAVN 177 L I+R + A+ +A G+ +++ V I+PEGTR G + F +G LAV Sbjct: 135 LGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGDLLPFKKGAFYLAVQ 194 Query: 178 AGLPVLPIAHNA 189 A +P++P+ +++ Sbjct: 195 AQVPIVPVVYSS 206 >ENSP00000352899 pep:known chromosome:NCBI35:9:136843433:136857646:-1 gene:ENSG00000169692 transcript:ENST00000359841 Length = 278 Score = 73.9 bits (180), Expect = 1e-13 Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 2/132 (1%) Query: 60 GIRYEVRGLENIPE-KPCVILSKHQSTWETFFLSGFF-EPLSQVLKRELLYVPFFGWALA 117 G+R+EVR + E +PCVI+S HQS + L E Q+ KRELL++ G + Sbjct: 75 GLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAKRELLFLGPVGLIMY 134 Query: 118 LLKPIAIDRSQPKLALKQLAKQGDECLKKGAWVLIFPEGTRIPVGQMGKFSRGGTALAVN 177 L I+R + A+ +A G+ +++ V I+PEGTR G + F +G LAV Sbjct: 135 LGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGDLLPFKKGAFYLAVQ 194 Query: 178 AGLPVLPIAHNA 189 A +P++P+ +++ Sbjct: 195 AQVPIVPVVYSS 206 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.324 0.138 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,902,842 Number of Sequences: 33869 Number of extensions: 388297 Number of successful extensions: 987 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 981 Number of HSP's gapped (non-prelim): 3 length of query: 257 length of database: 16,881,503 effective HSP length: 100 effective length of query: 157 effective length of database: 13,494,603 effective search space: 2118652671 effective search space used: 2118652671 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 103 (44.3 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0006 (178 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.320 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,331,176 Number of Sequences: 33869 Number of extensions: 274358 Number of successful extensions: 524 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 524 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 16,881,503 effective HSP length: 95 effective length of query: 83 effective length of database: 13,663,948 effective search space: 1134107684 effective search space used: 1134107684 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 101 (43.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0007 (568 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.319 0.136 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,634,955 Number of Sequences: 33869 Number of extensions: 971095 Number of successful extensions: 1698 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1698 Number of HSP's gapped (non-prelim): 0 length of query: 568 length of database: 16,881,503 effective HSP length: 107 effective length of query: 461 effective length of database: 13,257,520 effective search space: 6111716720 effective search space used: 6111716720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 107 (45.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0008 (684 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.317 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,699,013 Number of Sequences: 33869 Number of extensions: 786824 Number of successful extensions: 1821 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1821 Number of HSP's gapped (non-prelim): 0 length of query: 684 length of database: 16,881,503 effective HSP length: 109 effective length of query: 575 effective length of database: 13,189,782 effective search space: 7584124650 effective search space used: 7584124650 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 108 (46.2 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0009 (315 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.137 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,007,906 Number of Sequences: 33869 Number of extensions: 485891 Number of successful extensions: 763 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 763 Number of HSP's gapped (non-prelim): 0 length of query: 315 length of database: 16,881,503 effective HSP length: 102 effective length of query: 213 effective length of database: 13,426,865 effective search space: 2859922245 effective search space used: 2859922245 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0010 (183 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.324 0.139 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,528,470 Number of Sequences: 33869 Number of extensions: 258620 Number of successful extensions: 598 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 598 Number of HSP's gapped (non-prelim): 0 length of query: 183 length of database: 16,881,503 effective HSP length: 95 effective length of query: 88 effective length of database: 13,663,948 effective search space: 1202427424 effective search space used: 1202427424 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 101 (43.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0011 (295 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.320 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,740,800 Number of Sequences: 33869 Number of extensions: 471309 Number of successful extensions: 992 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 992 Number of HSP's gapped (non-prelim): 0 length of query: 295 length of database: 16,881,503 effective HSP length: 101 effective length of query: 194 effective length of database: 13,460,734 effective search space: 2611382396 effective search space used: 2611382396 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 104 (44.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0012 (88 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,950,093 Number of Sequences: 33869 Number of extensions: 110145 Number of successful extensions: 199 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 199 Number of HSP's gapped (non-prelim): 0 length of query: 88 length of database: 16,881,503 effective HSP length: 60 effective length of query: 28 effective length of database: 14,849,363 effective search space: 415782164 effective search space used: 415782164 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0013 (217 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.332 0.142 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,446,691 Number of Sequences: 33869 Number of extensions: 236165 Number of successful extensions: 546 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 546 Number of HSP's gapped (non-prelim): 0 length of query: 217 length of database: 16,881,503 effective HSP length: 98 effective length of query: 119 effective length of database: 13,562,341 effective search space: 1613918579 effective search space used: 1613918579 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 102 (43.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0014 (90 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.315 0.128 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,507,653 Number of Sequences: 33869 Number of extensions: 27052 Number of successful extensions: 32 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 0 length of query: 90 length of database: 16,881,503 effective HSP length: 62 effective length of query: 28 effective length of database: 14,781,625 effective search space: 413885500 effective search space used: 413885500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0015 (105 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.317 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,325,299 Number of Sequences: 33869 Number of extensions: 119039 Number of successful extensions: 402 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 402 Number of HSP's gapped (non-prelim): 0 length of query: 105 length of database: 16,881,503 effective HSP length: 76 effective length of query: 29 effective length of database: 14,307,459 effective search space: 414916311 effective search space used: 414916311 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 97 (42.0 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0016 (457 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.319 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,447,159 Number of Sequences: 33869 Number of extensions: 537673 Number of successful extensions: 1180 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1180 Number of HSP's gapped (non-prelim): 0 length of query: 457 length of database: 16,881,503 effective HSP length: 105 effective length of query: 352 effective length of database: 13,325,258 effective search space: 4690490816 effective search space used: 4690490816 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 106 (45.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0017 (434 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000313272 pep:novel chromosome:NCBI35:12:6536290:6547680:-... 109 4e-24 ENSP00000302433 pep:known-ccds chromosome:NCBI35:10:18874497:189... 78 1e-14 ENSP00000252594 pep:known-ccds chromosome:NCBI35:7:72161878:7216... 66 7e-11 ENSP00000309126 pep:known-ccds chromosome:NCBI35:7:72161878:7216... 66 7e-11 ENSP00000318986 pep:known-ccds chromosome:NCBI35:3:95264537:9532... 58 2e-08 ENSP00000305430 pep:known-ccds chromosome:NCBI35:1:46518410:4654... 58 2e-08 ENSP00000264670 pep:known-ccds chromosome:NCBI35:5:6652360:66861... 57 3e-08 ENSP00000349180 pep:known chromosome:NCBI35:5:6652353:6686404:-1... 50 3e-06 >ENSP00000313272 pep:novel chromosome:NCBI35:12:6536290:6547680:-1 gene:ENSG00000111641 transcript:ENST00000322166 Length = 855 Score = 109 bits (273), Expect = 4e-24 Identities = 93/334 (27%), Positives = 138/334 (41%), Gaps = 22/334 (6%) Query: 119 RRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWP-EQLDALCAANNAHPPMTLRVNR 177 R R L + +D + + +LL L +P +L AN P+TLR N Sbjct: 258 REEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNT 317 Query: 178 RHGERDAYLAELAEAGIKARACD-YSRDGIQLA-APRDVRELPGFAEGRVSVQDXXXXXX 235 R L G+ +S+ G+ + + + P + G +Q Sbjct: 318 LKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLP 377 Query: 236 XXXXXSAPGQRVLDACCAPGGKTCHLLETQPXXXXXXXXXXXXSRLVRVRENLQRLGLQA 295 +R+LD CCAPGGKT ++ + RL V NL RLG+ Sbjct: 378 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN 437 Query: 296 SLVAA-DARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGEL 354 ++++ D R + G F R+LLDAPCS TGVI + P +K + +DI AHLQ EL Sbjct: 438 TIISHYDGRQFPKVVGG--FDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKEL 495 Query: 355 L----DALWPTLEVGGVLLYATCSVMPAENSDSIAAFLAR-----TPGARELDLPGPWGM 405 L D++ T + GG L+Y TCS+ EN + L + P + G Sbjct: 496 LLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRF 555 Query: 406 KQPH-------GRQLLPQVEGHDGFYYAKLIKIS 432 ++ R+ P DGF+ AK K S Sbjct: 556 RERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFS 589 >ENSP00000302433 pep:known-ccds chromosome:NCBI35:10:18874497:18980556:-1 gene:ENSG00000152487 transcript:ENST00000302150 CCDS7130.1 Length = 469 Score = 78.2 bits (191), Expect = 1e-14 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 243 PGQRVLDACCAPGGKTCHLLETQPXXXXXXXXXXXXSRLVRVRENLQRLGLQA--SLVAA 300 PG+++LD C APGGKT H+ +++ ++++N LGL + + Sbjct: 234 PGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNALLLGLNSIRAFCFD 293 Query: 301 DARATG----EWWDGKP------FQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHL 350 +A E +G+P F RILLDAPCS G + P++ +++A+ L Sbjct: 294 GTKAVKLDMVEDTEGEPPFLPESFDRILLDAPCSGMG---QRPNMACTWSVKEVASYQPL 350 Query: 351 QGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTP 392 Q +L A L+ GVL+Y+TC++ AEN + +A L + P Sbjct: 351 QRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFP 392 >ENSP00000252594 pep:known-ccds chromosome:NCBI35:7:72161878:72167454:-1 gene:ENSG00000130305 transcript:ENST00000252594 CCDS5547.1 Length = 429 Score = 65.9 bits (159), Expect = 7e-11 Identities = 57/194 (29%), Positives = 79/194 (40%), Gaps = 9/194 (4%) Query: 210 APRDVRELPGFAEGRVSVQDXXXXXXXXXXXSAPGQRVLDACCAPGGKTCHLLETQPXXX 269 A D+ E P + G + +QD PG V+DAC APG KT HL Sbjct: 193 AQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQG 252 Query: 270 XXXXXXXXXSRLVRVRENLQRLGLQASLVAADARATGEWWDGK--PFQRILLDAPCSATG 327 RL + L R G+ +A + D + ILLD CS +G Sbjct: 253 KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSG 312 Query: 328 VIRRHPDIKLARKPEDIA--ALAHLQGELL--DALWPTLEVGGVLLYATCSVMPAENSDS 383 + R + A P + ALA Q L +P+L+ L+Y+TCS+ EN D Sbjct: 313 MPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDV 369 Query: 384 IAAFLARTPGAREL 397 + L + PGA L Sbjct: 370 VRDALQQNPGAFRL 383 >ENSP00000309126 pep:known-ccds chromosome:NCBI35:7:72161878:72167474:-1 gene:ENSG00000130305 transcript:ENST00000310326 CCDS5546.1 Length = 466 Score = 65.9 bits (159), Expect = 7e-11 Identities = 57/194 (29%), Positives = 79/194 (40%), Gaps = 9/194 (4%) Query: 210 APRDVRELPGFAEGRVSVQDXXXXXXXXXXXSAPGQRVLDACCAPGGKTCHLLETQPXXX 269 A D+ E P + G + +QD PG V+DAC APG KT HL Sbjct: 193 AQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQG 252 Query: 270 XXXXXXXXXSRLVRVRENLQRLGLQASLVAADARATGEWWDGK--PFQRILLDAPCSATG 327 RL + L R G+ +A + D + ILLD CS +G Sbjct: 253 KIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSG 312 Query: 328 VIRRHPDIKLARKPEDIA--ALAHLQGELL--DALWPTLEVGGVLLYATCSVMPAENSDS 383 + R + A P + ALA Q L +P+L+ L+Y+TCS+ EN D Sbjct: 313 MPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQ---RLVYSTCSLCQEENEDV 369 Query: 384 IAAFLARTPGAREL 397 + L + PGA L Sbjct: 370 VRDALQQNPGAFRL 383 >ENSP00000318986 pep:known-ccds chromosome:NCBI35:3:95264537:95328320:1 gene:ENSG00000178694 transcript:ENST00000314622 CCDS2927.1 Length = 340 Score = 57.8 bits (138), Expect = 2e-08 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 244 GQRVLDACCAPGGKTCHLLETQPXXXXXXXXXXXXSRLVRVRENLQRLGLQA-----SLV 298 G++VLD C APGGK+ LL+ RL +R+ L+ Q + Sbjct: 132 GEKVLDLCAAPGGKSIALLQCACPGYLHCNEYDSL-RLRWLRQTLESFIPQPLINVIKVS 190 Query: 299 AADARATGEWWDGKP--FQRILLDAPCSATGVIRRHPDIKLAR-KPEDIAALAHLQGELL 355 D R G D +P F ++L+DAPCS D + A + L LQ ELL Sbjct: 191 ELDGRKMG---DAQPEMFDKVLVDAPCSNDRSWLFSSDSQKASCRISQRRNLPLLQIELL 247 Query: 356 DALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGARELDLPG 401 + L GG+L+Y+TC++ AEN D I+ L +D+ G Sbjct: 248 RSAIKALRPGGILVYSTCTLSKAENQDVISEILNSHGNIMPMDIKG 293 >ENSP00000305430 pep:known-ccds chromosome:NCBI35:1:46518410:46542710:1 gene:ENSG00000117481 transcript:ENST00000307089 CCDS534.1 Length = 384 Score = 57.8 bits (138), Expect = 2e-08 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 243 PGQRVLDACCAPGGKTCHLLETQPXXXXXXXXXXXXSRLVRVRENLQ-------RLGLQA 295 PG VLD C APGGKT LL+T SR+ R+++ L R G Q Sbjct: 173 PGDIVLDLCAAPGGKTLALLQT-GCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQV 231 Query: 296 SLVAADARATGEWWDGKPFQRILLDAPCSAT--GVIRRHPDIKLARKPEDIAALAHLQGE 353 + + D R GE +G + R+L+D PC+ + +I + ++ L LQ + Sbjct: 232 RVTSWDGRKWGE-LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQ 290 Query: 354 LLDALWPTLEVGGVLLYATCSVMPAEN 380 LL A + GG ++Y+TCS+ +N Sbjct: 291 LLAAGLLATKPGGHVVYSTCSLSHLQN 317 >ENSP00000264670 pep:known-ccds chromosome:NCBI35:5:6652360:6686157:-1 gene:ENSG00000037474 transcript:ENST00000264670 CCDS3869.1 Length = 767 Score = 57.0 bits (136), Expect = 3e-08 Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 20/199 (10%) Query: 223 GRVSVQDXXXXXXXXXXXSAPGQRVLDACCAPGGKTCHLLETQPXXXXX-------XXXX 275 G +S Q+ P ++LD C APG KT L+E Sbjct: 156 GNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAND 215 Query: 276 XXXSRLVRVRENLQRLGLQASLVAA-DARATGEWW---DGKP----FQRILLDAPCSATG 327 R + +RL +V DA + DG+ + RIL D PCS G Sbjct: 216 VDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDG 275 Query: 328 VIRRHPDIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAF 387 +R++ D+ + L LQ + L GG ++Y+TCS+ P E+ IA+ Sbjct: 276 TMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASL 335 Query: 388 LARTPGAREL-----DLPG 401 L ++ GA EL +LPG Sbjct: 336 LEKSEGALELADVSNELPG 354 >ENSP00000349180 pep:known chromosome:NCBI35:5:6652353:6686404:-1 gene:ENSG00000037474 transcript:ENST00000356741 Length = 531 Score = 50.4 bits (119), Expect = 3e-06 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Query: 314 FQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATC 373 + RIL D PCS G +R++ D+ + L LQ + L GG ++Y+TC Sbjct: 26 YDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTC 85 Query: 374 SVMPAENSDSIAAFLARTPGAREL-----DLPG 401 S+ P E+ IA+ L ++ GA EL +LPG Sbjct: 86 SLNPIEDEAVIASLLEKSEGALELADVSNELPG 118 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.320 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,465,802 Number of Sequences: 33869 Number of extensions: 537516 Number of successful extensions: 1267 Number of sequences better than 1.0e-04: 8 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1253 Number of HSP's gapped (non-prelim): 9 length of query: 434 length of database: 16,881,503 effective HSP length: 105 effective length of query: 329 effective length of database: 13,325,258 effective search space: 4384009882 effective search space used: 4384009882 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 106 (45.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0018 (314 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000258494 pep:novel chromosome:NCBI35:12:103930533:1039807... 107 1e-23 ENSP00000220058 pep:novel chromosome:NCBI35:15:63081904:63109018... 90 3e-18 ENSP00000273450 pep:known-ccds chromosome:NCBI35:3:127305106:127... 88 8e-18 ENSP00000308809 pep:known-ccds chromosome:NCBI35:3:127305106:127... 88 8e-18 ENSP00000290230 pep:known-ccds chromosome:NCBI35:21:33798113:338... 49 4e-06 >ENSP00000258494 pep:novel chromosome:NCBI35:12:103930533:103980703:-1 gene:ENSG00000136010 transcript:ENST00000258494 Length = 752 Score = 107 bits (268), Expect = 1e-23 Identities = 86/308 (27%), Positives = 138/308 (44%), Gaps = 12/308 (3%) Query: 5 LRIVFAGTPEFAAEHLKALLDTPHRIVAVYTQPDRPAGRGQKLMPSAVKSLALEHGLPVM 64 L++ G F E L HR+V V+T PD+ G+ L +A K LP Sbjct: 23 LKLALIGQSLFGQEVYSHLRKEGHRVVGVFTVPDKD-GKADPLALAAEKDGTPVFKLPKW 81 Query: 65 QPQSXXXXXXXXXXXXXXXXXMVVVAYGLILPQAVLDIPRLGCINSHASLLPRWRGAAPI 124 + + V+ +P ++D P+ G I H S+LPR RGA+ I Sbjct: 82 RVKGKTIKEVAEAYRSVGAELNVLPFCTQFIPMDIIDSPKHGSIIYHPSILPRHRGASAI 141 Query: 125 QRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPISAADTGGSLHDR-LAALGPKAVIEA 183 + GD ++G +V + GLDTGP+LL+ S + DT +L++R L G KA++EA Sbjct: 142 NWTLIMGDKKAGFSVFWADDGLDTGPILLQRSCDVEPNDTVDALYNRFLFPEGIKAMVEA 201 Query: 184 IAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWSRPAVELERQVRAFTPWPVCHTSLAD 243 + +A G Q + ATY K+ A + W + A L +R P T + Sbjct: 202 VQLIADGKAPRIPQPEEGATYEGIQKKENAEISWDQSAEVLHNWIRGHDKVPGAWTEING 261 Query: 244 APLKVLGASLGQGSGAPGTILE---------ASRDGLLVACGEG-ALRLTRLQLPGGKPL 293 + G++L S PG LE +++GL++ +G AL + LQ GK + Sbjct: 262 QMVTFYGSTLLNSSVPPGEPLEIKGAKKPGLVTKNGLVLFGNDGKALTVRNLQFEDGKMI 321 Query: 294 AFADLYNS 301 + +++ Sbjct: 322 PASQYFST 329 >ENSP00000220058 pep:novel chromosome:NCBI35:15:63081904:63109018:-1 gene:ENSG00000103707 transcript:ENST00000220058 Length = 389 Score = 89.7 bits (221), Expect = 3e-18 Identities = 93/320 (29%), Positives = 134/320 (41%), Gaps = 46/320 (14%) Query: 6 RIVFAGTPEFAAEHLKALLDTPHRI-------VAVYTQPDRPAGRGQKLMPSAVKSLALE 58 R++F GT +FA E L+AL + V T P P+ +G +P VK A++ Sbjct: 49 RVLFFGTDQFAREALRALHAARENKEEELIDKLEVVTMPS-PSPKG---LP--VKQYAVQ 102 Query: 59 HGLPVMQPQSXXXXXXXXXXXXXXXXXMVVVAYGLILPQAVLDIPRLGCINSHASLLPRW 118 LPV + VV ++G +L +A++ G +N H S LPRW Sbjct: 103 SQLPVYEWPDVGSGEYDVG---------VVASFGRLLNEALILKFPYGILNVHPSCLPRW 153 Query: 119 RGAAPIQRAVEAGDAESGVTVMQME-AGLDTGPMLLKVSTPISAADTGGSLHDRLAALGP 177 RG AP+ V GD +GVT+MQ+ D GP+L + + P+ T L L+ LG Sbjct: 154 RGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGA 213 Query: 178 KAVIEAIAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWSRPAVE-LERQVRAF----- 231 +I + L +G Q ATYA K++ + + W E + R RA Sbjct: 214 NMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKWEEQTSEQIFRLYRAIGNIIP 273 Query: 232 --TPWPVCHTSLAD---------APLKVLGASLGQGSGAPGTILEASRDGLLVACGEGAL 280 T W L D A K+ G +L GS I LLV C +G + Sbjct: 274 LQTLWMANTIKLLDLVEVNSSVLADPKLTGQALIPGS----VIYHKQSQILLVYCKDGWI 329 Query: 281 RLTRLQLPGGKPLAFADLYN 300 + + L K L D YN Sbjct: 330 GVRSVMLK--KSLTATDFYN 347 >ENSP00000273450 pep:known-ccds chromosome:NCBI35:3:127305106:127382183:-1 gene:ENSG00000144908 transcript:ENST00000273450 CCDS3034.1 Length = 902 Score = 88.2 bits (217), Expect = 8e-18 Identities = 79/315 (25%), Positives = 133/315 (42%), Gaps = 29/315 (9%) Query: 5 LRIVFAGTPEFAAEHLKALLDTPHRIVAVYTQPDRPAGRGQKLMPSAVKSLALEHGLPVM 64 ++I G F E L H +V V+T PD+ G+ L A K G+PV Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKD-GKADPLGLEAEKD-----GVPVF 54 Query: 65 Q-----PQSXXXXXXXXXXXXXXXXXMVVVAYGLILPQAVLDIPRLGCINSHASLLPRWR 119 + + V+ +P ++ PR G I H SLLPR R Sbjct: 55 KYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHR 114 Query: 120 GAAPIQRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPISAADTGGSLHDR-LAALGPK 178 GA+ I + GD + G ++ + GLDTG +LL+ + DT +L++R L G K Sbjct: 115 GASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIK 174 Query: 179 AVIEAIAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWSRPAVELERQVRAFTPWPVCH 238 +++A+ +A G Q + ATY K+ A+++W +PA + +R P Sbjct: 175 GMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPGAW 234 Query: 239 TSLADAPLKVLGASLG-------------QGSGAPGTILEASRDGLLVACGEGALRLTR- 284 T + L ++L G+ PG + +A GL++ + + L + Sbjct: 235 TEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVTKA---GLILFGNDDKMLLVKN 291 Query: 285 LQLPGGKPLAFADLY 299 +QL GK + ++ + Sbjct: 292 IQLEDGKMILASNFF 306 >ENSP00000308809 pep:known-ccds chromosome:NCBI35:3:127305106:127382183:-1 gene:ENSG00000144908 transcript:ENST00000309149 CCDS3035.1 Length = 505 Score = 88.2 bits (217), Expect = 8e-18 Identities = 79/315 (25%), Positives = 133/315 (42%), Gaps = 29/315 (9%) Query: 5 LRIVFAGTPEFAAEHLKALLDTPHRIVAVYTQPDRPAGRGQKLMPSAVKSLALEHGLPVM 64 ++I G F E L H +V V+T PD+ G+ L A K G+PV Sbjct: 1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKD-GKADPLGLEAEKD-----GVPVF 54 Query: 65 Q-----PQSXXXXXXXXXXXXXXXXXMVVVAYGLILPQAVLDIPRLGCINSHASLLPRWR 119 + + V+ +P ++ PR G I H SLLPR R Sbjct: 55 KYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHR 114 Query: 120 GAAPIQRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPISAADTGGSLHDR-LAALGPK 178 GA+ I + GD + G ++ + GLDTG +LL+ + DT +L++R L G K Sbjct: 115 GASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIK 174 Query: 179 AVIEAIAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWSRPAVELERQVRAFTPWPVCH 238 +++A+ +A G Q + ATY K+ A+++W +PA + +R P Sbjct: 175 GMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPGAW 234 Query: 239 TSLADAPLKVLGASLG-------------QGSGAPGTILEASRDGLLVACGEGALRLTR- 284 T + L ++L G+ PG + +A GL++ + + L + Sbjct: 235 TEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVTKA---GLILFGNDDKMLLVKN 291 Query: 285 LQLPGGKPLAFADLY 299 +QL GK + ++ + Sbjct: 292 IQLEDGKMILASNFF 306 >ENSP00000290230 pep:known-ccds chromosome:NCBI35:21:33798113:33837068:-1 gene:ENSG00000159131 transcript:ENST00000290230 CCDS13627.1 Length = 1010 Score = 49.3 bits (116), Expect = 4e-06 Identities = 26/85 (30%), Positives = 48/85 (56%) Query: 108 INSHASLLPRWRGAAPIQRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPISAADTGGS 167 +N H SLLP ++G+ ++A+E G +G TV + +D G ++L+ + P+ DT + Sbjct: 912 LNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVAT 971 Query: 168 LHDRLAALGPKAVIEAIAGLAAGTL 192 L +R+ K A+ +A+GT+ Sbjct: 972 LSERVKLAEHKIFPAALQLVASGTV 996 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,364,210 Number of Sequences: 33869 Number of extensions: 445927 Number of successful extensions: 962 Number of sequences better than 1.0e-04: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 950 Number of HSP's gapped (non-prelim): 5 length of query: 314 length of database: 16,881,503 effective HSP length: 102 effective length of query: 212 effective length of database: 13,426,865 effective search space: 2846495380 effective search space used: 2846495380 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0019 (168 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000288022 pep:known-ccds chromosome:NCBI35:16:67920025:679... 80 1e-15 >ENSP00000288022 pep:known-ccds chromosome:NCBI35:16:67920025:67921999:-1 gene:ENSG00000157312 transcript:ENST00000288022 CCDS10875.1 Length = 243 Score = 79.7 bits (195), Expect = 1e-15 Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 5 NILEFPDPRLRTIAKPVEVVD---DAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVM 61 ++ + DP LR +A PVE +++L + + M +GL+A Q+ V ++++ + Sbjct: 66 HVCQVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLAL 125 Query: 62 DLSED-------------KSEP---RVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRP 105 +L E + EP RVF+NP L + + EGC SV GF V R Sbjct: 126 ELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRF 185 Query: 106 QKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLST 150 Q V+I LD +G A G A IQHE DHL G LF+D + + Sbjct: 186 QAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDS 230 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,998,318 Number of Sequences: 33869 Number of extensions: 259383 Number of successful extensions: 594 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 592 Number of HSP's gapped (non-prelim): 1 length of query: 168 length of database: 16,881,503 effective HSP length: 94 effective length of query: 74 effective length of database: 13,697,817 effective search space: 1013638458 effective search space used: 1013638458 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 101 (43.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0020 (341 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.318 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,887,390 Number of Sequences: 33869 Number of extensions: 488158 Number of successful extensions: 898 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 898 Number of HSP's gapped (non-prelim): 0 length of query: 341 length of database: 16,881,503 effective HSP length: 102 effective length of query: 239 effective length of database: 13,426,865 effective search space: 3209020735 effective search space used: 3209020735 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0021 (362 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,227,869 Number of Sequences: 33869 Number of extensions: 381935 Number of successful extensions: 948 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 948 Number of HSP's gapped (non-prelim): 0 length of query: 362 length of database: 16,881,503 effective HSP length: 103 effective length of query: 259 effective length of database: 13,392,996 effective search space: 3468785964 effective search space used: 3468785964 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0022 (185 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000350144 pep:novel chromosome:NCBI35:1:37937710:37942950:... 57 6e-09 >ENSP00000350144 pep:novel chromosome:NCBI35:1:37937710:37942950:-1 gene:ENSG00000196449 transcript:ENST00000357536 Length = 279 Score = 57.4 bits (137), Expect = 6e-09 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 19/190 (10%) Query: 8 QCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQL-D 66 + A +R G V+A PT+ ++GL C A+ + LK R K L V + + Sbjct: 71 RAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYR 130 Query: 67 FLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVAVRVTDHPLVQELCHL- 125 + +P+ L L PGP T ++ E L + + V +R+ DH +Q+L + Sbjct: 131 YCRVRVPEGLLKDLL---PGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMF 187 Query: 126 TGPLISTSANPAGRPAARTRLRVEQY--FHDELDAIL-GGALGGRRNP-----SLIRDL- 176 GPL TSAN + + ++ L VE++ +L ++ GG +G ++P S + DL Sbjct: 188 EGPLALTSANLSSQASS---LNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLS 244 Query: 177 VTGQ--VIRP 184 V G+ +IRP Sbjct: 245 VPGKFGIIRP 254 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.322 0.139 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,022,080 Number of Sequences: 33869 Number of extensions: 310339 Number of successful extensions: 590 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 589 Number of HSP's gapped (non-prelim): 1 length of query: 185 length of database: 16,881,503 effective HSP length: 96 effective length of query: 89 effective length of database: 13,630,079 effective search space: 1213077031 effective search space used: 1213077031 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 101 (43.5 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0023 (325 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000263416 pep:known-ccds chromosome:NCBI35:1:74883205:7491... 115 4e-26 ENSP00000339399 pep:known-ccds chromosome:NCBI35:1:74883205:7491... 115 4e-26 ENSP00000311769 pep:novel chromosome:NCBI35:2:24212129:24219306:... 100 1e-21 ENSP00000337834 pep:known-ccds chromosome:NCBI35:2:24211957:2421... 100 1e-21 ENSP00000238721 pep:known-ccds chromosome:NCBI35:2:24211956:2421... 100 1e-21 ENSP00000347872 pep:known-ccds chromosome:NCBI35:17:38420150:384... 89 4e-18 ENSP00000351804 pep:known-ccds chromosome:NCBI35:17:38420150:384... 89 4e-18 ENSP00000323678 pep:known-ccds chromosome:NCBI35:18:71039477:710... 87 1e-17 ENSP00000303129 pep:known chromosome:NCBI35:16:76379984:76571504... 71 1e-12 ENSP00000326121 pep:known chromosome:NCBI35:17:38423614:38427909... 71 1e-12 ENSP00000246909 pep:novel chromosome:NCBI35:17:38420148:38427923... 65 1e-10 ENSP00000252638 pep:known-ccds chromosome:NCBI35:6:107126545:107... 62 6e-10 ENSP00000304592 pep:known-ccds chromosome:NCBI35:17:77629504:776... 60 2e-09 ENSP00000263702 pep:novel chromosome:NCBI35:1:29340001:29378052:... 59 7e-09 ENSP00000238248 pep:known-ccds chromosome:NCBI35:9:111404956:111... 55 1e-07 ENSP00000311572 pep:known-ccds chromosome:NCBI35:9:111404808:111... 55 1e-07 ENSP00000339034 pep:novel chromosome:NCBI35:1:144015642:14401674... 47 3e-05 >ENSP00000263416 pep:known-ccds chromosome:NCBI35:1:74883205:74910755:-1 gene:ENSG00000116791 transcript:ENST00000263416 CCDS665.1 Length = 329 Score = 115 bits (289), Expect = 4e-26 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 2/242 (0%) Query: 1 MAKRIQFAAYGGPEVLEYR-DYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPA-PGLP 58 + + ++ +GGPEVL+ R D P +V ++ A G+N ++TY RSG Y P LP Sbjct: 7 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66 Query: 59 SGLXXXXXXXXXXXXXXXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQA 118 + FK GDRV ++ G Y+E + A+ + LP+ +DF+Q Sbjct: 67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQG 126 Query: 119 AAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKA 178 AA+ + T L + ++ GE++L H A+GGVGL ACQ A+A G++++GT + E Sbjct: 127 AAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ 186 Query: 179 RLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSF 238 ++ Q+GA E ++ N ++ + K ++ + + L ++ G ++ Sbjct: 187 KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV 246 Query: 239 GN 240 G+ Sbjct: 247 GS 248 >ENSP00000339399 pep:known-ccds chromosome:NCBI35:1:74883205:74910748:-1 gene:ENSG00000116791 transcript:ENST00000340866 CCDS665.1 Length = 329 Score = 115 bits (289), Expect = 4e-26 Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 2/242 (0%) Query: 1 MAKRIQFAAYGGPEVLEYR-DYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPA-PGLP 58 + + ++ +GGPEVL+ R D P +V ++ A G+N ++TY RSG Y P LP Sbjct: 7 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLP 66 Query: 59 SGLXXXXXXXXXXXXXXXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQA 118 + FK GDRV ++ G Y+E + A+ + LP+ +DF+Q Sbjct: 67 YTPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQG 126 Query: 119 AAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKA 178 AA+ + T L + ++ GE++L H A+GGVGL ACQ A+A G++++GT + E Sbjct: 127 AAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ 186 Query: 179 RLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSF 238 ++ Q+GA E ++ N ++ + K ++ + + L ++ G ++ Sbjct: 187 KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV 246 Query: 239 GN 240 G+ Sbjct: 247 GS 248 >ENSP00000311769 pep:novel chromosome:NCBI35:2:24212129:24219306:-1 gene:ENSG00000115129 transcript:ENST00000308886 Length = 321 Score = 100 bits (250), Expect = 1e-21 Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 5/259 (1%) Query: 5 IQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLY-PAPGLPSGLXX 63 + F GGPE L ++ PG EV ++ A LN D R G Y P PG + L Sbjct: 4 VHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGL 63 Query: 64 XXXXXXXXXXXXXT-RFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVM 122 +K+GD A A P G ++ + E L+ +P+G+ QAAA+ Sbjct: 64 EASGHVAELGPGCQGHWKIGD-TAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIP 122 Query: 123 LKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLAR 182 LT LL ++ G+ +L HA GVG A Q + G + T S +K ++A Sbjct: 123 EAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE 182 Query: 183 QHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFG-NA 241 + GA +Y E+ + L+ T G ++ D +G WE +++C+A G V +G Sbjct: 183 KLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMG 242 Query: 242 SGPVTGVNLG-ILSQKGSL 259 G + G +L ++GSL Sbjct: 243 GGDINGPLFSKLLFKRGSL 261 >ENSP00000337834 pep:known-ccds chromosome:NCBI35:2:24211957:24219306:-1 gene:ENSG00000115129 transcript:ENST00000335934 CCDS1708.1 Length = 332 Score = 100 bits (250), Expect = 1e-21 Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 5/259 (1%) Query: 5 IQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLY-PAPGLPSGLXX 63 + F GGPE L ++ PG EV ++ A LN D R G Y P PG + L Sbjct: 4 VHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGL 63 Query: 64 XXXXXXXXXXXXXT-RFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVM 122 +K+GD A A P G ++ + E L+ +P+G+ QAAA+ Sbjct: 64 EASGHVAELGPGCQGHWKIGD-TAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIP 122 Query: 123 LKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLAR 182 LT LL ++ G+ +L HA GVG A Q + G + T S +K ++A Sbjct: 123 EAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE 182 Query: 183 QHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFG-NA 241 + GA +Y E+ + L+ T G ++ D +G WE +++C+A G V +G Sbjct: 183 KLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMG 242 Query: 242 SGPVTGVNLG-ILSQKGSL 259 G + G +L ++GSL Sbjct: 243 GGDINGPLFSKLLFKRGSL 261 >ENSP00000238721 pep:known-ccds chromosome:NCBI35:2:24211956:24219379:-1 gene:ENSG00000115129 transcript:ENST00000238721 CCDS1708.1 Length = 332 Score = 100 bits (250), Expect = 1e-21 Identities = 76/259 (29%), Positives = 118/259 (45%), Gaps = 5/259 (1%) Query: 5 IQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLY-PAPGLPSGLXX 63 + F GGPE L ++ PG EV ++ A LN D R G Y P PG + L Sbjct: 4 VHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGL 63 Query: 64 XXXXXXXXXXXXXT-RFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVM 122 +K+GD A A P G ++ + E L+ +P+G+ QAAA+ Sbjct: 64 EASGHVAELGPGCQGHWKIGD-TAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIP 122 Query: 123 LKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLAR 182 LT LL ++ G+ +L HA GVG A Q + G + T S +K ++A Sbjct: 123 EAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE 182 Query: 183 QHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFG-NA 241 + GA +Y E+ + L+ T G ++ D +G WE +++C+A G V +G Sbjct: 183 KLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMG 242 Query: 242 SGPVTGVNLG-ILSQKGSL 259 G + G +L ++GSL Sbjct: 243 GGDINGPLFSKLLFKRGSL 261 >ENSP00000347872 pep:known-ccds chromosome:NCBI35:17:38420150:38427865:-1 gene:ENSG00000108828 transcript:ENST00000355653 CCDS11451.1 Length = 393 Score = 89.4 bits (220), Expect = 4e-18 Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 5/229 (2%) Query: 16 LEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPA-PGLPSGLXXXXXXXXXXXXX 74 L+ R P PGP ++ +R RA GLNF D R GLY P LP Sbjct: 64 LQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGE 123 Query: 75 XXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQ 134 + K GDRV G + E + + +P+ + FE+AAA+++ +T +L Sbjct: 124 GVSDRKAGDRVMVLNRS-GMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFD 182 Query: 135 TYELRGGETILFHAAAGGVGLFACQWAKAL-GVQLIGTVSSPEKARLARQHGAWETIDYS 193 L+ G ++L H AAGGVG+ A Q + + V + GT S+ K +++G IDY Sbjct: 183 FGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASA-SKHEALKENGVTHPIDYH 241 Query: 194 HENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFGNAS 242 + + +++ K +V D +G + + P G +V++G A+ Sbjct: 242 TTDYVDEIKKISP-KGVDIVMDPLGGSDTAKGYNLLKPMGKVVTYGMAN 289 >ENSP00000351804 pep:known-ccds chromosome:NCBI35:17:38420150:38427930:-1 gene:ENSG00000108828 transcript:ENST00000358926 CCDS11451.1 Length = 393 Score = 89.4 bits (220), Expect = 4e-18 Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 5/229 (2%) Query: 16 LEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPA-PGLPSGLXXXXXXXXXXXXX 74 L+ R P PGP ++ +R RA GLNF D R GLY P LP Sbjct: 64 LQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGE 123 Query: 75 XXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQ 134 + K GDRV G + E + + +P+ + FE+AAA+++ +T +L Sbjct: 124 GVSDRKAGDRVMVLNRS-GMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFD 182 Query: 135 TYELRGGETILFHAAAGGVGLFACQWAKAL-GVQLIGTVSSPEKARLARQHGAWETIDYS 193 L+ G ++L H AAGGVG+ A Q + + V + GT S+ K +++G IDY Sbjct: 183 FGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASA-SKHEALKENGVTHPIDYH 241 Query: 194 HENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFGNAS 242 + + +++ K +V D +G + + P G +V++G A+ Sbjct: 242 TTDYVDEIKKISP-KGVDIVMDPLGGSDTAKGYNLLKPMGKVVTYGMAN 289 >ENSP00000323678 pep:known-ccds chromosome:NCBI35:18:71039477:71050105:-1 gene:ENSG00000180011 transcript:ENST00000322342 CCDS12008.1 Length = 377 Score = 87.4 bits (215), Expect = 1e-17 Identities = 84/289 (29%), Positives = 125/289 (43%), Gaps = 18/289 (6%) Query: 19 RDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLY-PAPGLPSGLXXXXXXXXXXXXXXXT 77 RD PG ++ VRNR +G+N D Y +G Y P+ P + + Sbjct: 53 RDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSAS 112 Query: 78 -RFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTY 136 R+ VG VAY G+++E V+ +P + +++ G T L++ Sbjct: 113 ARYTVGQAVAYMAP--GSFAEYTVVPASIATPVPSVKP--EYLTLLVSGTTAYISLKELG 168 Query: 137 ELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLARQHGAWETIDYSHEN 196 L G+ +L AAAGG G FA Q +K +IGT SS EK+ + G I+Y E Sbjct: 169 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP 228 Query: 197 VARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFGNASG--------PVTGV 248 V VL+ + VVY+SVG ++ ++D +A +G L+ G SG PV Sbjct: 229 VG-TVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAG 287 Query: 249 NLGILSQKGSLYVTRPTLGSYADTPEKLQAMADELFGLIERGDIRIEIN 297 L K S V L Y K QA L + GD+ E++ Sbjct: 288 TLPAKLLKKSASVQGFFLNHYL---SKYQAAMSHLLEMCVSGDLVCEVD 333 >ENSP00000303129 pep:known chromosome:NCBI35:16:76379984:76571504:1 gene:ENSG00000171724 transcript:ENST00000302536 Length = 448 Score = 71.2 bits (173), Expect = 1e-12 Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 12/249 (4%) Query: 3 KRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSG-LYPAPGLPSGL 61 + + A +GG L EP E+++R +A GLNFID R G + P P Sbjct: 72 RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 131 Query: 62 XXXXXXXXXXXXXXXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAV 121 +++GDRV A A++E+ E + +PD + F +AAA Sbjct: 132 GFECSGIVEALGDSVKGYEIGDRVM-AFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAF 190 Query: 122 MLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKAL-GVQLIGTVSS--PEKA 178 + +T +L + LR G ++L H+A GGVG Q + V + GT S+ E Sbjct: 191 PMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAI 250 Query: 179 RLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSF 238 + + H DY E V R E D +V D + D L + P G + + Sbjct: 251 KDSVTHLFDRNADYVQE-VKRISAEGVD-----IVLDCLCGDNTGKGLSLLKPLGTYILY 304 Query: 239 GNASGPVTG 247 G +S VTG Sbjct: 305 G-SSNMVTG 312 >ENSP00000326121 pep:known chromosome:NCBI35:17:38423614:38427909:-1 gene:ENSG00000108828 transcript:ENST00000315674 Length = 242 Score = 70.9 bits (172), Expect = 1e-12 Identities = 48/145 (33%), Positives = 69/145 (47%), Gaps = 2/145 (1%) Query: 16 LEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPA-PGLPSGLXXXXXXXXXXXXX 74 L+ R P PGP ++ +R RA GLNF D R GLY P LP Sbjct: 64 LQSRPAAPPAPGPGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGE 123 Query: 75 XXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQ 134 + K GDRV G + E + + +P+ + FE+AAA+++ +T +L Sbjct: 124 GVSDRKAGDRVMVLNRS-GMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFD 182 Query: 135 TYELRGGETILFHAAAGGVGLFACQ 159 L+ G ++L H AAGGVG+ A Q Sbjct: 183 FGNLQPGHSVLVHMAAGGVGMAAVQ 207 >ENSP00000246909 pep:novel chromosome:NCBI35:17:38420148:38427923:-1 gene:ENSG00000108828 transcript:ENST00000246909 Length = 300 Score = 64.7 bits (156), Expect = 1e-10 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 4/164 (2%) Query: 80 KVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELR 139 K GDRV G + E + + +P+ + FE+AAA+++ +T +L L+ Sbjct: 36 KAGDRVMVLNRS-GMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQ 94 Query: 140 GGETILFHAAAGGVGLFACQWAKAL-GVQLIGTVSSPEKARLARQHGAWETIDYSHENVA 198 G ++L H AAGGVG+ A Q + + V + GT S+ K +++G IDY + Sbjct: 95 PGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASA-SKHEALKENGVTHPIDYHTTDYV 153 Query: 199 RRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFGNAS 242 + +++ K +V D +G + + P G +V++G A+ Sbjct: 154 DEIKKISP-KGVDIVMDPLGGSDTAKGYNLLKPMGKVVTYGMAN 196 >ENSP00000252638 pep:known-ccds chromosome:NCBI35:6:107126545:107184045:-1 gene:ENSG00000130347 transcript:ENST00000252638 CCDS5056.1 Length = 396 Score = 62.0 bits (149), Expect = 6e-10 Identities = 70/239 (29%), Positives = 96/239 (40%), Gaps = 31/239 (12%) Query: 10 YGGPEVLEYRD--YQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAPGL---------- 57 YG EVL + P P EV V+ A +N ID RSG Y A L Sbjct: 51 YGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSG-YGATALNMKRDPLHVK 109 Query: 58 ------PSGLXXXXXXXXXXXXXXXTRFKVGDRVAYATGPL--GAYSELHVLAEEKLVHL 109 P L FK GD V A P G SE V++ ++ H Sbjct: 110 IKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHK 169 Query: 110 PDGIDFEQAAAVMLKGLTTQYLLRQTYELRG----GETILFHAAAGGVGLFACQWAKALG 165 P + QAA++ LT + + L G+ +L A+GGVG FA Q KA Sbjct: 170 PKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWD 229 Query: 166 VQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVG--KDTW 222 + V S + + L R+ GA + IDY +V ++ L K + D+VG +TW Sbjct: 230 AH-VTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSL---KPFDFILDNVGGSTETW 284 >ENSP00000304592 pep:known-ccds chromosome:NCBI35:17:77629504:77649395:-1 gene:ENSG00000169710 transcript:ENST00000306749 CCDS11801.1 Length = 2511 Score = 60.1 bits (144), Expect = 2e-09 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 4/144 (2%) Query: 100 VLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQ 159 +L+ + L +P E+AA+V + T Y L +R GET+L H+ +GGVG A Sbjct: 1627 LLSPDFLWDVPSNWTLEEAASVPVVYSTAYYALVVRGRVRPGETLLIHSGSGGVGQAAIA 1686 Query: 160 WAKALGVQLIGTVSSPEK-ARLARQHGAWETIDYSHE---NVARRVLELTDGKKCPVVYD 215 A +LG ++ TV S EK A L + ++ +++ + + VL T GK +V + Sbjct: 1687 IALSLGCRVFTTVGSAEKRAYLQARFPQLDSTSFANSRDTSFEQHVLWHTGGKGVDLVLN 1746 Query: 216 SVGKDTWETSLDCVAPRGLLVSFG 239 S+ ++ + S+ C+A G + G Sbjct: 1747 SLAEEKLQASVRCLATHGRFLEIG 1770 >ENSP00000263702 pep:novel chromosome:NCBI35:1:29340001:29378052:-1 gene:ENSG00000116353 transcript:ENST00000263702 Length = 373 Score = 58.5 bits (140), Expect = 7e-09 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 2/172 (1%) Query: 3 KRIQFAAYGGP-EVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYP-APGLPSG 60 + + + +G P +V+E ++ + A +VRV+ A +N D G Y P LP+ Sbjct: 44 RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGFLPELPAV 103 Query: 61 LXXXXXXXXXXXXXXXTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAA 120 T K GD V A LG + V +EE L+ +P I + AA Sbjct: 104 GGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAAT 163 Query: 121 VMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTV 172 + + T +L +L+ G++++ +A+ GVG Q A ALG++ I V Sbjct: 164 LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVV 215 >ENSP00000238248 pep:known-ccds chromosome:NCBI35:9:111404956:111441480:-1 gene:ENSG00000106853 transcript:ENST00000238248 CCDS6779.1 Length = 329 Score = 54.7 bits (130), Expect = 1e-07 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 10/151 (6%) Query: 103 EEKLVHLPDGIDFEQA-AAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWA 161 E+ L PD I A V + GLT + L + ++GGET++ +AAAG VG Q A Sbjct: 103 EKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIA 162 Query: 162 KALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELT--DGKKCPVVYDSVGK 219 K G +++G V S EK ++ G +Y L+ DG C +D+VG Sbjct: 163 KLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDC--YFDNVGG 220 Query: 220 DTWETSLDCVAPRGLL-----VSFGNASGPV 245 + T + + G + +S N +GP+ Sbjct: 221 EFSNTVIGQMKKFGRIAICGAISTYNRTGPL 251 >ENSP00000311572 pep:known-ccds chromosome:NCBI35:9:111404808:111441266:-1 gene:ENSG00000106853 transcript:ENST00000309195 CCDS6779.1 Length = 329 Score = 54.7 bits (130), Expect = 1e-07 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 10/151 (6%) Query: 103 EEKLVHLPDGIDFEQA-AAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWA 161 E+ L PD I A V + GLT + L + ++GGET++ +AAAG VG Q A Sbjct: 103 EKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIA 162 Query: 162 KALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELT--DGKKCPVVYDSVGK 219 K G +++G V S EK ++ G +Y L+ DG C +D+VG Sbjct: 163 KLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDC--YFDNVGG 220 Query: 220 DTWETSLDCVAPRGLL-----VSFGNASGPV 245 + T + + G + +S N +GP+ Sbjct: 221 EFSNTVIGQMKKFGRIAICGAISTYNRTGPL 251 >ENSP00000339034 pep:novel chromosome:NCBI35:1:144015642:144016745:1 gene:ENSG00000174716 transcript:ENST00000310023 Length = 315 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 110 PDGIDFEQA-AAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQL 168 PD + A V + GLT + L ++GGET++ +AAAG VG Q K G ++ Sbjct: 104 PDTVPLSLALGTVSMTGLTAYFGLLDICGVKGGETVMVNAAAGAVGSVLGQITKLKGCKV 163 Query: 169 IGTVSSPEKARLARQHGA 186 +G V S EK ++ G+ Sbjct: 164 VGAVGSDEKTACLKKLGS 181 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.319 0.138 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,487,666 Number of Sequences: 33869 Number of extensions: 458266 Number of successful extensions: 908 Number of sequences better than 1.0e-04: 17 Number of HSP's better than 0.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 878 Number of HSP's gapped (non-prelim): 18 length of query: 325 length of database: 16,881,503 effective HSP length: 102 effective length of query: 223 effective length of database: 13,426,865 effective search space: 2994190895 effective search space used: 2994190895 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0024 (305 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000264193 pep:known-ccds chromosome:NCBI35:3:99780982:9979... 256 1e-68 >ENSP00000264193 pep:known-ccds chromosome:NCBI35:3:99780982:99795131:-1 gene:ENSG00000080819 transcript:ENST00000264193 CCDS2932.1 Length = 454 Score = 256 bits (655), Expect = 1e-68 Identities = 131/311 (42%), Positives = 179/311 (57%), Gaps = 16/311 (5%) Query: 3 DRIAAVKTYLLDLQDRICAALEAEDGKARFAEDAWERPAXXXXXXXXXXXXALIEKGGVN 62 D ++ +L+ Q ++C AL DG A F+ D WER + EK GV+ Sbjct: 147 DMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVS 206 Query: 63 FSHVFGDSLPPSASAHRPELAGRG-----------FQALGVSLVIHPENPHVPTSHANVR 111 S V G+ +A ++ RG F A+GVS VIHP+NPH PT H N R Sbjct: 207 ISVVHGNLSEEAAK----QMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYR 262 Query: 112 FFCAEKEGEEPVWWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADVYPRYKEWCDRY 171 +F E+ WWFGGG DLTP Y ++ED VH+HR ++AC G D+YP++K+WCD Y Sbjct: 263 YFEVEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDY 322 Query: 172 FHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQR 231 F + HR E RGIGG+FFDDL+ + F F+++ A + +Y+P+V++ F +++ Sbjct: 323 FFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEK 382 Query: 232 EFQAYRRGRYVEFNLVFDRGTLFGL-QSGGRTESILMSLPPQVRWGYDWKPEPGSEEARL 290 +Q RRGRYVEFNL++DRGT FGL G R ESILMSLP RW Y P S+EA + Sbjct: 383 LWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEI 442 Query: 291 TEYFLADRDWL 301 E RDW+ Sbjct: 443 LEVLRHPRDWV 453 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.324 0.141 0.473 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,583,516 Number of Sequences: 33869 Number of extensions: 532092 Number of successful extensions: 735 Number of sequences better than 1.0e-04: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 732 Number of HSP's gapped (non-prelim): 1 length of query: 305 length of database: 16,881,503 effective HSP length: 101 effective length of query: 204 effective length of database: 13,460,734 effective search space: 2745989736 effective search space used: 2745989736 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 104 (44.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0025 (274 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,372,124 Number of Sequences: 33869 Number of extensions: 317801 Number of successful extensions: 579 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 579 Number of HSP's gapped (non-prelim): 0 length of query: 274 length of database: 16,881,503 effective HSP length: 100 effective length of query: 174 effective length of database: 13,494,603 effective search space: 2348060922 effective search space used: 2348060922 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 104 (44.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0026 (328 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.318 0.132 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,512,504 Number of Sequences: 33869 Number of extensions: 487262 Number of successful extensions: 889 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 889 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 16,881,503 effective HSP length: 102 effective length of query: 226 effective length of database: 13,426,865 effective search space: 3034471490 effective search space used: 3034471490 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 105 (45.1 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0027 (428 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,644,056 Number of Sequences: 33869 Number of extensions: 513425 Number of successful extensions: 1139 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1139 Number of HSP's gapped (non-prelim): 0 length of query: 428 length of database: 16,881,503 effective HSP length: 105 effective length of query: 323 effective length of database: 13,325,258 effective search space: 4304058334 effective search space used: 4304058334 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 106 (45.4 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0028 (200 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.315 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,253,667 Number of Sequences: 33869 Number of extensions: 189032 Number of successful extensions: 1454 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1454 Number of HSP's gapped (non-prelim): 0 length of query: 200 length of database: 16,881,503 effective HSP length: 97 effective length of query: 103 effective length of database: 13,596,210 effective search space: 1400409630 effective search space used: 1400409630 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 102 (43.9 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0029 (517 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000351754 pep:known-ccds chromosome:NCBI35:17:75808832:758... 104 2e-22 ENSP00000355384 pep:novel chromosome:NCBI35:17:75808824:75841892... 104 2e-22 ENSP00000354747 pep:known-ccds chromosome:NCBI35:17:75808824:758... 104 2e-22 ENSP00000351597 pep:novel chromosome:NCBI35:3:48638162:48647879:... 95 2e-19 ENSP00000307089 pep:known chromosome:NCBI35:3:48638162:48647930:... 95 2e-19 ENSP00000304783 pep:known-ccds chromosome:NCBI35:7:102608614:102... 80 5e-15 ENSP00000342396 pep:known chromosome:NCBI35:7:102597866:10268054... 80 5e-15 ENSP00000346325 pep:known chromosome:NCBI35:7:102587128:10268054... 80 5e-15 ENSP00000349210 pep:known-ccds chromosome:NCBI35:7:102587128:102... 80 5e-15 ENSP00000345873 pep:known-ccds chromosome:NCBI35:7:106999869:107... 79 9e-15 ENSP00000265715 pep:known-ccds chromosome:NCBI35:7:106895031:106... 79 9e-15 ENSP00000320217 pep:novel chromosome:NCBI35:12:56299960:56306181... 74 4e-13 ENSP00000341682 pep:novel chromosome:NCBI35:1:202613839:20264424... 70 6e-12 ENSP00000286298 pep:known-ccds chromosome:NCBI35:5:149320639:149... 66 6e-11 ENSP00000337648 pep:known chromosome:NCBI35:3:48638162:48647930:... 61 3e-09 ENSP00000276609 pep:known-ccds chromosome:NCBI35:8:92330692:9247... 60 6e-09 ENSP00000309504 pep:known-ccds chromosome:NCBI35:8:92330692:9247... 60 6e-09 ENSP00000348434 pep:known-ccds chromosome:NCBI35:6:36019276:3610... 52 2e-06 ENSP00000347778 pep:known-ccds chromosome:NCBI35:6:36019273:3610... 52 2e-06 >ENSP00000351754 pep:known-ccds chromosome:NCBI35:17:75808832:75841887:1 gene:ENSG00000181045 transcript:ENST00000358882 CCDS11771.1 Length = 589 Score = 104 bits (260), Expect = 2e-22 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 4 RLLPFLAWLPGLHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 R LP LAWLP L + GL+ + A+PQ++AYA +AGLP +YGLY+A + + Sbjct: 15 RRLPILAWLPSYSLQWLKMDFVAGLSVGLTAIPQALAYAEVAGLPPQYGLYSAFMGCFVY 74 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAPLGSPQYVQAVLLLTFLAGAFQWLLGVLRVG 123 G+SR + GPTA +S+L+ P Y +LL FL+G Q +GVLR+G Sbjct: 75 FFLGTSRDVTLGPTAIMSLLV-----SFYTFHEPAY---AVLLAFLSGCIQLAMGVLRLG 126 Query: 124 SLVNFVSHSVMLGFTLGAALLIVLGQL 150 L++F+S+ V+ GFT AA+ I GQ+ Sbjct: 127 FLLDFISYPVIKGFTSAAAVTIGFGQI 153 Score = 72.0 bits (175), Expect = 1e-12 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 262 MLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGLNLEAG 321 ++GL+ S+++A+A A++ DANQE+ A GL+N+LG +S+ GSF R+ +N ++G Sbjct: 298 LMGLLESIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSG 357 Query: 322 ARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLIAWGLIDRPALRALYRSGRAE 381 +P G ++P A+AA I++ L D R L+R R + Sbjct: 358 VCTPAGGLVTGVLVLLSLDYLTSLFYYIPKSALAAVIIMAVAPLFDTKIFRTLWRVKRLD 417 Query: 382 CXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTPRVLRQRNDEEEVLRIEGSIFFG 441 Q I AG L SL+ L + P + VL+ + F Sbjct: 418 -LLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPET-KVSEGPVLVLQPASGLSFP 475 Query: 442 ACDYLQR--LMR--QCDRPR-LVLDARQVNFIDF 470 A + L+ L R + PR LVL+ V ID+ Sbjct: 476 AMEALREEILSRALEVSPPRCLVLECTHVCSIDY 509 >ENSP00000355384 pep:novel chromosome:NCBI35:17:75808824:75841892:1 gene:ENSG00000181045 transcript:ENST00000361193 Length = 606 Score = 104 bits (260), Expect = 2e-22 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 4 RLLPFLAWLPGLHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 R LP LAWLP L + GL+ + A+PQ++AYA +AGLP +YGLY+A + + Sbjct: 32 RRLPILAWLPSYSLQWLKMDFVAGLSVGLTAIPQALAYAEVAGLPPQYGLYSAFMGCFVY 91 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAPLGSPQYVQAVLLLTFLAGAFQWLLGVLRVG 123 G+SR + GPTA +S+L+ P Y +LL FL+G Q +GVLR+G Sbjct: 92 FFLGTSRDVTLGPTAIMSLLV-----SFYTFHEPAY---AVLLAFLSGCIQLAMGVLRLG 143 Query: 124 SLVNFVSHSVMLGFTLGAALLIVLGQL 150 L++F+S+ V+ GFT AA+ I GQ+ Sbjct: 144 FLLDFISYPVIKGFTSAAAVTIGFGQI 170 Score = 72.0 bits (175), Expect = 1e-12 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 262 MLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGLNLEAG 321 ++GL+ S+++A+A A++ DANQE+ A GL+N+LG +S+ GSF R+ +N ++G Sbjct: 315 LMGLLESIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSG 374 Query: 322 ARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLIAWGLIDRPALRALYRSGRAE 381 +P G ++P A+AA I++ L D R L+R R + Sbjct: 375 VCTPAGGLVTGVLVLLSLDYLTSLFYYIPKSALAAVIIMAVAPLFDTKIFRTLWRVKRLD 434 Query: 382 CXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTPRVLRQRNDEEEVLRIEGSIFFG 441 Q I AG L SL+ L + P + VL+ + F Sbjct: 435 -LLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPET-KVSEGPVLVLQPASGLSFP 492 Query: 442 ACDYLQR--LMR--QCDRPR-LVLDARQVNFIDF 470 A + L+ L R + PR LVL+ V ID+ Sbjct: 493 AMEALREEILSRALEVSPPRCLVLECTHVCSIDY 526 >ENSP00000354747 pep:known-ccds chromosome:NCBI35:17:75808824:75841892:1 gene:ENSG00000181045 transcript:ENST00000361294 CCDS11771.1 Length = 589 Score = 104 bits (260), Expect = 2e-22 Identities = 60/147 (40%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 4 RLLPFLAWLPGLHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 R LP LAWLP L + GL+ + A+PQ++AYA +AGLP +YGLY+A + + Sbjct: 15 RRLPILAWLPSYSLQWLKMDFVAGLSVGLTAIPQALAYAEVAGLPPQYGLYSAFMGCFVY 74 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAPLGSPQYVQAVLLLTFLAGAFQWLLGVLRVG 123 G+SR + GPTA +S+L+ P Y +LL FL+G Q +GVLR+G Sbjct: 75 FFLGTSRDVTLGPTAIMSLLV-----SFYTFHEPAY---AVLLAFLSGCIQLAMGVLRLG 126 Query: 124 SLVNFVSHSVMLGFTLGAALLIVLGQL 150 L++F+S+ V+ GFT AA+ I GQ+ Sbjct: 127 FLLDFISYPVIKGFTSAAAVTIGFGQI 153 Score = 72.0 bits (175), Expect = 1e-12 Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 7/214 (3%) Query: 262 MLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGLNLEAG 321 ++GL+ S+++A+A A++ DANQE+ A GL+N+LG +S+ GSF R+ +N ++G Sbjct: 298 LMGLLESIAVAKAFASQNNYRIDANQELLAIGLTNMLGSLVSSYPVTGSFGRTAVNAQSG 357 Query: 322 ARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLIAWGLIDRPALRALYRSGRAE 381 +P G ++P A+AA I++ L D R L+R R + Sbjct: 358 VCTPAGGLVTGVLVLLSLDYLTSLFYYIPKSALAAVIIMAVAPLFDTKIFRTLWRVKRLD 417 Query: 382 CXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTPRVLRQRNDEEEVLRIEGSIFFG 441 Q I AG L SL+ L + P + VL+ + F Sbjct: 418 -LLPLCVTFLLCFWEVQYGILAGALVSLLMLLHSAARPET-KVSEGPVLVLQPASGLSFP 475 Query: 442 ACDYLQR--LMR--QCDRPR-LVLDARQVNFIDF 470 A + L+ L R + PR LVL+ V ID+ Sbjct: 476 AMEALREEILSRALEVSPPRCLVLECTHVCSIDY 509 >ENSP00000351597 pep:novel chromosome:NCBI35:3:48638162:48647879:-1 gene:ENSG00000008300 transcript:ENST00000358747 Length = 758 Score = 94.7 bits (234), Expect = 2e-19 Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 12/159 (7%) Query: 6 LPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIAC 64 LP L WLP R L + GL+ AI+ LPQ +AYAL+AGLP +GLY++ PV I Sbjct: 75 LPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFYPVFIYF 134 Query: 65 LWGSSRYLVSGPTAAISVLLFSSVAPLAPLG-----------SPQYVQAVLLLTFLAGAF 113 L+G+SR++ G A +SV++ S LAP VQ L+ L G F Sbjct: 135 LFGTSRHISVGTFAVMSVMVGSVTESLAPQALNDSMINETARDAARVQVASTLSVLVGLF 194 Query: 114 QWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 Q LG++ G +V ++S ++ G+T AA+ + + QL Y Sbjct: 195 QVGLGLIHFGFVVTYLSEPLVRGYTTAAAVQVFVSQLKY 233 Score = 56.2 bits (134), Expect = 6e-08 Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 20/231 (8%) Query: 242 PLVFDSRSILDLLPAAVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPW 301 P+ +++ L+ +A ++G ++S+ + A R G D+NQE+ A GLSNL+G Sbjct: 333 PVAPNTQLFSKLVGSAFTIAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGI 392 Query: 302 LSASLSAGSFTRSGLNLEAGARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLI 361 + S +RS + G S +AG +P +AA I++ Sbjct: 393 FQCFPVSCSMSRSLVQESTGGNSQVAGAISSLFILLIIVKLGELFHDLPKAVLAAIIIVN 452 Query: 362 AWGLIDRPA-LRALYRSGRAECXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTPR 420 G++ + + +R+L+++ RA+ + V+ SL+ + RT P Sbjct: 453 LKGMLRQLSDMRSLWKANRADLLIWLVTFTATILLNLDLGLVVAVIFSLLLVVVRTQMPH 512 Query: 421 --VLRQRNDEE-----------------EVLRIEGSIFFGACDYLQRLMRQ 452 VL Q D + +V R +++F ++ ++Q Sbjct: 513 YSVLGQVPDTDIYRDVAEYSEAKEVRGVKVFRSSATVYFANAEFYSDALKQ 563 >ENSP00000307089 pep:known chromosome:NCBI35:3:48638162:48647930:-1 gene:ENSG00000008300 transcript:ENST00000307364 Length = 740 Score = 94.7 bits (234), Expect = 2e-19 Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 12/159 (7%) Query: 6 LPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIAC 64 LP L WLP R L + GL+ AI+ LPQ +AYAL+AGLP +GLY++ PV I Sbjct: 75 LPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFYPVFIYF 134 Query: 65 LWGSSRYLVSGPTAAISVLLFSSVAPLAPLG-----------SPQYVQAVLLLTFLAGAF 113 L+G+SR++ G A +SV++ S LAP VQ L+ L G F Sbjct: 135 LFGTSRHISVGTFAVMSVMVGSVTESLAPQALNDSMINETARDAARVQVASTLSVLVGLF 194 Query: 114 QWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 Q LG++ G +V ++S ++ G+T AA+ + + QL Y Sbjct: 195 QVGLGLIHFGFVVTYLSEPLVRGYTTAAAVQVFVSQLKY 233 Score = 56.2 bits (134), Expect = 6e-08 Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 20/231 (8%) Query: 242 PLVFDSRSILDLLPAAVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPW 301 P+ +++ L+ +A ++G ++S+ + A R G D+NQE+ A GLSNL+G Sbjct: 333 PVAPNTQLFSKLVGSAFTIAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGI 392 Query: 302 LSASLSAGSFTRSGLNLEAGARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLI 361 + S +RS + G S +AG +P +AA I++ Sbjct: 393 FQCFPVSCSMSRSLVQESTGGNSQVAGAISSLFILLIIVKLGELFHDLPKAVLAAIIIVN 452 Query: 362 AWGLIDRPA-LRALYRSGRAECXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTPR 420 G++ + + +R+L+++ RA+ + V+ SL+ + RT P Sbjct: 453 LKGMLRQLSDMRSLWKANRADLLIWLVTFTATILLNLDLGLVVAVIFSLLLVVVRTQMPH 512 Query: 421 --VLRQRNDEE-----------------EVLRIEGSIFFGACDYLQRLMRQ 452 VL Q D + +V R +++F ++ ++Q Sbjct: 513 YSVLGQVPDTDIYRDVAEYSEAKEVRGVKVFRSSATVYFANAEFYSDALKQ 563 >ENSP00000304783 pep:known-ccds chromosome:NCBI35:7:102608614:102680549:-1 gene:ENSG00000170615 transcript:ENST00000306312 CCDS5733.1 Length = 744 Score = 79.7 bits (195), Expect = 5e-15 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 6 LPFLAWLPG--LHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 LP WLP +LG + G++ +L LPQ +A+A++A +P +GLY++ PV + Sbjct: 65 LPITKWLPAYKFKEYVLG-DLVSGISTGVLQLPQGLAFAMLAAVPPIFGLYSSFYPVIMY 123 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAP----------------LGSPQYVQAVLLLT 107 C G+SR++ GP A IS+++ L P V+ + +T Sbjct: 124 CFLGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVT 183 Query: 108 FLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 L+G Q+ LGV R G + +++ ++ GFT AA+ + L Y Sbjct: 184 LLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKY 228 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 1/164 (0%) Query: 257 AVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGL 316 A+A ++G ++S+A+ LA + G D NQE+ A GL N +G + S +RS + Sbjct: 343 AIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGLCNSIGSLFQTFSISCSLSRSLV 402 Query: 317 NLEAGARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLIAWGL-IDRPALRALY 375 G ++ LAG E +P ++A +++ G+ + L + Sbjct: 403 QEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFW 462 Query: 376 RSGRAECXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTP 419 R+ + E + V+ +L+ + RT +P Sbjct: 463 RTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSP 506 >ENSP00000342396 pep:known chromosome:NCBI35:7:102597866:102680549:-1 gene:ENSG00000170615 transcript:ENST00000339444 Length = 685 Score = 79.7 bits (195), Expect = 5e-15 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 6 LPFLAWLPG--LHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 LP WLP +LG + G++ +L LPQ +A+A++A +P +GLY++ PV + Sbjct: 65 LPITKWLPAYKFKEYVLG-DLVSGISTGVLQLPQGLAFAMLAAVPPIFGLYSSFYPVIMY 123 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAP----------------LGSPQYVQAVLLLT 107 C G+SR++ GP A IS+++ L P V+ + +T Sbjct: 124 CFLGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVT 183 Query: 108 FLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 L+G Q+ LGV R G + +++ ++ GFT AA+ + L Y Sbjct: 184 LLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKY 228 Score = 48.5 bits (114), Expect = 1e-05 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 1/164 (0%) Query: 257 AVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGL 316 A+A ++G ++S+A+ LA + G D NQE+ A GL N +G + S +RS + Sbjct: 343 AIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGLCNSIGSLFQTFSISCSLSRSLV 402 Query: 317 NLEAGARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLIAWGL-IDRPALRALY 375 G ++ LAG E +P ++A +++ G+ + L + Sbjct: 403 QEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFW 462 Query: 376 RSGRAECXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTP 419 R+ + E + V+ +L+ + RT +P Sbjct: 463 RTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSP 506 >ENSP00000346325 pep:known chromosome:NCBI35:7:102587128:102680549:-1 gene:ENSG00000170615 transcript:ENST00000354356 Length = 516 Score = 79.7 bits (195), Expect = 5e-15 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 6 LPFLAWLPG--LHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 LP WLP +LG + G++ +L LPQ +A+A++A +P +GLY++ PV + Sbjct: 65 LPITKWLPAYKFKEYVLG-DLVSGISTGVLQLPQGLAFAMLAAVPPIFGLYSSFYPVIMY 123 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAP----------------LGSPQYVQAVLLLT 107 C G+SR++ GP A IS+++ L P V+ + +T Sbjct: 124 CFLGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVT 183 Query: 108 FLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 L+G Q+ LGV R G + +++ ++ GFT AA+ + L Y Sbjct: 184 LLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKY 228 Score = 45.8 bits (107), Expect = 9e-05 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 1/163 (0%) Query: 257 AVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGL 316 A+A ++G ++S+A+ LA + G D NQE+ A GL N +G + S +RS + Sbjct: 343 AIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGLCNSIGSLFQTFSISCSLSRSLV 402 Query: 317 NLEAGARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLIAWGL-IDRPALRALY 375 G ++ LAG E +P ++A +++ G+ + L + Sbjct: 403 QEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFW 462 Query: 376 RSGRAECXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTST 418 R+ + E + V+ +L+ + RT + Sbjct: 463 RTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQS 505 >ENSP00000349210 pep:known-ccds chromosome:NCBI35:7:102587128:102680549:-1 gene:ENSG00000170615 transcript:ENST00000356767 CCDS5732.1 Length = 335 Score = 79.7 bits (195), Expect = 5e-15 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 19/165 (11%) Query: 6 LPFLAWLPG--LHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 LP WLP +LG + G++ +L LPQ +A+A++A +P +GLY++ PV + Sbjct: 65 LPITKWLPAYKFKEYVLG-DLVSGISTGVLQLPQGLAFAMLAAVPPIFGLYSSFYPVIMY 123 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAP----------------LGSPQYVQAVLLLT 107 C G+SR++ GP A IS+++ L P V+ + +T Sbjct: 124 CFLGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVT 183 Query: 108 FLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 L+G Q+ LGV R G + +++ ++ GFT AA+ + L Y Sbjct: 184 LLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKY 228 >ENSP00000345873 pep:known-ccds chromosome:NCBI35:7:106999869:107037603:-1 gene:ENSG00000091138 transcript:ENST00000340010 CCDS5748.1 Length = 764 Score = 79.0 bits (193), Expect = 9e-15 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 24/172 (13%) Query: 5 LLPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 L P +WLP + L + G++ I+A+ Q +A+AL+ +P YGLYA+ P I Sbjct: 57 LFPIASWLPAYRLKEWLLSDIVSGISTGIVAVLQGLAFALLVDIPPVYGLYASFFPAIIY 116 Query: 64 CLWGSSRYLVSGPTAAISVL----LFSSVAPLAP------LGSPQ-------------YV 100 +G+SR++ GP +S++ + +V+ P LG P V Sbjct: 117 LFFGTSRHISVGPFPILSMMVGLAVSGAVSKAVPDRNATTLGLPNNSNNSSLLDDERVRV 176 Query: 101 QAVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 A +T L+G Q G+LR+G +V ++S S++ GFT AA+ +++ QL + Sbjct: 177 AAAASVTVLSGIIQLAFGILRIGFVVIYLSESLISGFTTAAAVHVLVSQLKF 228 >ENSP00000265715 pep:known-ccds chromosome:NCBI35:7:106895031:106952198:1 gene:ENSG00000091137 transcript:ENST00000265715 CCDS5746.1 Length = 780 Score = 79.0 bits (193), Expect = 9e-15 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 23/169 (13%) Query: 5 LLPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 L+P L WLP + L + G++ ++A Q MAYAL+A +P YGLY+A P+ Sbjct: 68 LVPILEWLPKYRVKEWLLSDVISGVSTGLVATLQGMAYALLAAVPVGYGLYSAFFPILTY 127 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAP----------------------LGSPQYVQ 101 ++G+SR++ GP +S+++ S V +AP V Sbjct: 128 FIFGTSRHISVGPFPVVSLMVGSVVLSMAPDEHFLVSSSNGTVLNTTMIDTAARDTARVL 187 Query: 102 AVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQL 150 LT L G Q + G L++G +V +++ ++ GFT AA +++ QL Sbjct: 188 IASALTLLVGIIQLIFGGLQIGFIVRYLADPLVGGFTTAAAFQVLVSQL 236 >ENSP00000320217 pep:novel chromosome:NCBI35:12:56299960:56306181:1 gene:ENSG00000135502 transcript:ENST00000320442 Length = 563 Score = 73.6 bits (179), Expect = 4e-13 Identities = 85/338 (25%), Positives = 132/338 (39%), Gaps = 73/338 (21%) Query: 39 MAYALIAGLPAEYGLYAAMLPVAIACLWGSSRYLVSGPTAAISVLLFSSVAPLAP---LG 95 MA+AL+A +P +GLY + PV I L G+ R+L +G A +S++ S+V L P +G Sbjct: 42 MAFALLASVPPVFGLYTSFFPVLIYSLLGTGRHLSTGTFAILSLMTGSAVERLVPEPLVG 101 Query: 96 S----------PQYVQAVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLI 145 + Q V + F +GA + VL++G L F+S V+ T GAAL + Sbjct: 102 NLSGIEKEQLDAQRVGVAAAVAFGSGALMLGMFVLQLGVLSTFLSEPVVKALTSGAALHV 161 Query: 146 VLGQLPYXXXXXXXXXXXXXXNGWRLLARFAEFDGPSL--LVGGFSFXXXXXXXXXXXXX 203 +L QLP G SL +G FS Sbjct: 162 LLSQLP-------------------------SLLGLSLPRQIGCFSLFKTLASLLTALPR 196 Query: 204 XXXXXXXXXXXXXXXXXPGTFASVAHVQALSSALPGWSPLVF-----------DSR---S 249 P +V L + +PG LV D+R Sbjct: 197 SSPAELTISALSLALLVPVKELNVRFRDRLPTPIPGEVVLVLLASVLCFTSSVDTRYQVQ 256 Query: 250 ILDLLPAAVACGMLGLVTSL---------------SIARALAARQGDAF----DANQEVR 290 I+ LLP +L + L +++ +LA+ D + D+NQE Sbjct: 257 IVGLLPGGFPQPLLPNLAELPRILADSLPIALVSFAVSASLASIHADKYSYTIDSNQEFL 316 Query: 291 AQGLSNLLGPWLSASLSAGSFTRSGLNLEAGARSPLAG 328 A G SNL+ S ++ + + L ++AG ++ LAG Sbjct: 317 AHGASNLISSLFSCFPNSATLATTNLLVDAGGKTQLAG 354 >ENSP00000341682 pep:novel chromosome:NCBI35:1:202613839:202644245:-1 gene:ENSG00000174502 transcript:ENST00000340781 Length = 887 Score = 69.7 bits (169), Expect = 6e-12 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 20/168 (11%) Query: 5 LLPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 LLP L+WLP + + + GL+G + +PQ MA+AL+A LPA GLY++ P+ Sbjct: 55 LLPVLSWLPKYKIKDYIIPDLLGGLSGGSIQVPQGMAFALLANLPAVNGLYSSFFPLLTY 114 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSVAPLAPLGSPQ---------YVQAVLL--------- 105 G +V G A IS+L+ + LAP Q YV + Sbjct: 115 FFLGGVHQMVPGTFAVISILVGNICLQLAPESKFQVFNNATNESYVDTAAMEAERLHVSA 174 Query: 106 -LTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 L L Q LG ++ G + ++S S + GF A L I++ L Y Sbjct: 175 TLACLTAIIQMGLGFMQFGFVAIYLSESFIRGFMTAAGLQILISVLKY 222 >ENSP00000286298 pep:known-ccds chromosome:NCBI35:5:149320639:149347149:1 gene:ENSG00000155850 transcript:ENST00000286298 CCDS4300.1 Length = 739 Score = 66.2 bits (160), Expect = 6e-11 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 34/180 (18%) Query: 6 LPFLAWLP--GLHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIA 63 LP L WLP L + +LG + GL IL +PQS+AY+L+AG YGLY + I Sbjct: 93 LPVLQWLPKYDLKKNILG-DVMSGLIVGILLVPQSIAYSLLAGQEPVYGLYTSFFASIIY 151 Query: 64 CLWGSSRYLVSGPTAAISVLLFSSV-----------APLAP-LGSPQYVQAVL------- 104 L G+SR++ G + +++ +V A AP LG +L Sbjct: 152 FLLGTSRHISVGIFGVLCLMIGETVDRELQKAGYDNAHSAPSLGMVSNGSTLLNHTSDRI 211 Query: 105 ------------LLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 +TF+AG +Q +G +VG + ++S +++ GF GA+ I+ Q Y Sbjct: 212 CDKSCYAIMVGSTVTFIAGVYQVAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKY 271 >ENSP00000337648 pep:known chromosome:NCBI35:3:48638162:48647930:-1 gene:ENSG00000008300 transcript:ENST00000337000 Length = 650 Score = 60.8 bits (146), Expect = 3e-09 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 1/68 (1%) Query: 6 LPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIAC 64 LP L WLP R L + GL+ AI+ LPQ +AYAL+AGLP +GLY++ PV I Sbjct: 75 LPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFYPVFIYF 134 Query: 65 LWGSSRYL 72 L+G+SR++ Sbjct: 135 LFGTSRHI 142 Score = 56.2 bits (134), Expect = 6e-08 Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 20/231 (8%) Query: 242 PLVFDSRSILDLLPAAVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPW 301 P+ +++ L+ +A ++G ++S+ + A R G D+NQE+ A GLSNL+G Sbjct: 226 PVAPNTQLFSKLVGSAFTIAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGI 285 Query: 302 LSASLSAGSFTRSGLNLEAGARSPLAGXXXXXXXXXXXXXXXXXIEHVPLPAMAAGILLI 361 + S +RS + G S +AG +P +AA I++ Sbjct: 286 FQCFPVSCSMSRSLVQESTGGNSQVAGAISSLFILLIIVKLGELFHDLPKAVLAAIIIVN 345 Query: 362 AWGLIDRPA-LRALYRSGRAECXXXXXXXXXXXXXXXQNAIYAGVLASLVFYLRRTSTPR 420 G++ + + +R+L+++ RA+ + V+ SL+ + RT P Sbjct: 346 LKGMLRQLSDMRSLWKANRADLLIWLVTFTATILLNLDLGLVVAVIFSLLLVVVRTQMPH 405 Query: 421 --VLRQRNDEE-----------------EVLRIEGSIFFGACDYLQRLMRQ 452 VL Q D + +V R +++F ++ ++Q Sbjct: 406 YSVLGQVPDTDIYRDVAEYSEAKEVRGVKVFRSSATVYFANAEFYSDALKQ 456 >ENSP00000276609 pep:known-ccds chromosome:NCBI35:8:92330692:92479554:1 gene:ENSG00000147606 transcript:ENST00000276609 CCDS6254.1 Length = 656 Score = 59.7 bits (143), Expect = 6e-09 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 19/168 (11%) Query: 4 RLLPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAI 62 R LP L W P + + L + G+ A+ + Q +A+A+++ + +GLY ++ P I Sbjct: 30 RRLPILDWAPHYNLKENLLPDTVSGIMLAVQQVTQGLAFAVLSSVHPVFGLYGSLFPAII 89 Query: 63 ACLWGSSRYLVSGPTAAISVLLFSSVAPLAP--------------LG----SPQYVQAVL 104 ++G ++ +G A S++ ++V + P LG Q + Sbjct: 90 YAIFGMGHHVATGTFALTSLISANAVERIVPQNMQNLTTQSNTSVLGLSDFEMQRIHVAA 149 Query: 105 LLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 ++FL G Q + VL++GS V+ V+ T GAA +V Q+ Y Sbjct: 150 AVSFLGGVIQVAMFVLQLGSATFVVTEPVISAMTTGAATHVVTSQVKY 197 >ENSP00000309504 pep:known-ccds chromosome:NCBI35:8:92330692:92476122:1 gene:ENSG00000147606 transcript:ENST00000309536 CCDS6255.1 Length = 663 Score = 59.7 bits (143), Expect = 6e-09 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 19/168 (11%) Query: 4 RLLPFLAWLPGLH-RGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAI 62 R LP L W P + + L + G+ A+ + Q +A+A+++ + +GLY ++ P I Sbjct: 30 RRLPILDWAPHYNLKENLLPDTVSGIMLAVQQVTQGLAFAVLSSVHPVFGLYGSLFPAII 89 Query: 63 ACLWGSSRYLVSGPTAAISVLLFSSVAPLAP--------------LG----SPQYVQAVL 104 ++G ++ +G A S++ ++V + P LG Q + Sbjct: 90 YAIFGMGHHVATGTFALTSLISANAVERIVPQNMQNLTTQSNTSVLGLSDFEMQRIHVAA 149 Query: 105 LLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 ++FL G Q + VL++GS V+ V+ T GAA +V Q+ Y Sbjct: 150 AVSFLGGVIQVAMFVLQLGSATFVVTEPVISAMTTGAATHVVTSQVKY 197 >ENSP00000348434 pep:known-ccds chromosome:NCBI35:6:36019276:36100283:-1 gene:ENSG00000112053 transcript:ENST00000356119 CCDS4813.1 Length = 970 Score = 51.6 bits (122), Expect = 2e-06 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 26/173 (15%) Query: 5 LLPFLAWLP--GLHRGMLGREAWVGLNGAILALPQSMAYALIAG--LPAEYGLYAAMLPV 60 + PFL W+ L +LG + G++ ++ +PQ + +L+A +P YAA Sbjct: 76 IFPFLEWMCMYRLKDWLLG-DLLAGISVGLVQVPQGLTLSLLARQLIPPLNIAYAAFCSS 134 Query: 61 AIACLWGSSRYLVSGPTAAISVLLFSSV---------------------APLAPLGSPQY 99 I ++GS + G +S LL + + AP +G + Sbjct: 135 VIYVIFGSCHQMSIGSFFLVSALLINVLKVSPFNNGQLVMGSFVKNEFSAPSYLMGYNKS 194 Query: 100 VQAVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 + V TFL G Q ++GVL +G + ++ S M + AL I+L QL + Sbjct: 195 LSVVATTTFLTGIIQLIMGVLGLGFIATYLPESAMSAYLAAVALHIMLSQLTF 247 >ENSP00000347778 pep:known-ccds chromosome:NCBI35:6:36019273:36100355:-1 gene:ENSG00000112053 transcript:ENST00000355574 CCDS4813.1 Length = 970 Score = 51.6 bits (122), Expect = 2e-06 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 26/173 (15%) Query: 5 LLPFLAWLP--GLHRGMLGREAWVGLNGAILALPQSMAYALIAG--LPAEYGLYAAMLPV 60 + PFL W+ L +LG + G++ ++ +PQ + +L+A +P YAA Sbjct: 76 IFPFLEWMCMYRLKDWLLG-DLLAGISVGLVQVPQGLTLSLLARQLIPPLNIAYAAFCSS 134 Query: 61 AIACLWGSSRYLVSGPTAAISVLLFSSV---------------------APLAPLGSPQY 99 I ++GS + G +S LL + + AP +G + Sbjct: 135 VIYVIFGSCHQMSIGSFFLVSALLINVLKVSPFNNGQLVMGSFVKNEFSAPSYLMGYNKS 194 Query: 100 VQAVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPY 152 + V TFL G Q ++GVL +G + ++ S M + AL I+L QL + Sbjct: 195 LSVVATTTFLTGIIQLIMGVLGLGFIATYLPESAMSAYLAAVALHIMLSQLTF 247 Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.326 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,131,426 Number of Sequences: 33869 Number of extensions: 503126 Number of successful extensions: 1327 Number of sequences better than 1.0e-04: 19 Number of HSP's better than 0.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 1268 Number of HSP's gapped (non-prelim): 47 length of query: 517 length of database: 16,881,503 effective HSP length: 106 effective length of query: 411 effective length of database: 13,291,389 effective search space: 5462760879 effective search space used: 5462760879 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 107 (45.8 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0030 (307 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done ***** No hits found ****** Database: Homo_sapiens.NCBI35.feb.pep.fa Posted date: Mar 19, 2006 5:43 PM Number of letters in database: 16,881,503 Number of sequences in database: 33,869 Lambda K H 0.321 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,252,827 Number of Sequences: 33869 Number of extensions: 423347 Number of successful extensions: 802 Number of sequences better than 1.0e-04: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 802 Number of HSP's gapped (non-prelim): 0 length of query: 307 length of database: 16,881,503 effective HSP length: 101 effective length of query: 206 effective length of database: 13,460,734 effective search space: 2772911204 effective search space used: 2772911204 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 104 (44.7 bits) BLASTP 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PA0031 (503 letters) Database: Homo_sapiens.NCBI35.feb.pep.fa 33,869 sequences; 16,881,503 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ENSP00000339801 pep:known-ccds chromosome:NCBI35:X:148266062:148... 131 1e-30 ENSP00000337148 pep:known-ccds chromosome:NCBI35:5:94916719:9496... 131 2e-30 ENSP00000355289 pep:known-ccds chromosome:NCBI35:X:148274423:148... 93 6e-19 ENSP00000258145 pep:known-ccds chromosome:NCBI35:12:63393491:634... 83 5e-16 ENSP00000268695 pep:known-ccds chromosome:NCBI35:16:87407650:874... 76 6e-14 ENSP00000342327 pep:known chromosome:NCBI35:5:78147297:78317522:... 74 2e-13 ENSP00000264914 pep:known-ccds chromosome:NCBI35:5:78108799:7831... 74 2e-13 ENSP00000354083 pep:known-ccds chromosome:NCBI35:20:45719558:458... 74 2e-13 ENSP00000354662 pep:known-ccds chromosome:NCBI35:20:45719063:458... 74 2e-13 ENSP00000353007 pep:known-ccds chromosome:NCBI35:20:45719063:458... 74 2e-13 ENSP00000260128 pep:known-ccds chromosome:NCBI35:8:70541427:7073... 71 2e-12 ENSP00000350900 pep:novel chromosome:NCBI35:X:2818673:2840753:-1... 71 2e-12 ENSP00000320219 pep:known chromosome:NCBI35:4:115181285:11525759... 70 3e-12 ENSP00000342550 pep:novel chromosome:NCBI35:5:149657398:14966213... 69 7e-12 ENSP00000333395 pep:known chromosome:NCBI35:5:149656101:14966213... 69 9e-12 ENSP00000348406 pep:known-ccds chromosome:NCBI35:22:49353594:493... 67 3e-11 ENSP00000216124 pep:known-ccds chromosome:NCBI35:22:49353594:493... 67 3e-11 ENSP00000217961 pep:known-ccds chromosome:NCBI35:X:6997233:71325... 62 9e-10 ENSP00000306533 pep:known chromosome:NCBI35:X:148274422:14829250... 60 3e-09 ENSP00000351220 pep:novel chromosome:NCBI35:X:2983417:3023958:1 ... 60 4e-09 ENSP00000352319 pep:known-ccds chromosome:NCBI35:X:2978214:30241... 60 4e-09 ENSP00000354503 pep:known-ccds chromosome:NCBI35:X:2846213:28756... 60 6e-09 ENSP00000044768 pep:novel chromosome:NCBI35:X:2846213:2875672:-1... 60 6e-09 ENSP00000351835 pep:known chromosome:NCBI35:5:94916622:94964848:... 58 2e-08 ENSP00000217890 pep:known chromosome:NCBI35:X:2826027:2840751:-1... 55 2e-07 >ENSP00000339801 pep:known-ccds chromosome:NCBI35:X:148266062:148292540:-1 gene:ENSG00000010404 transcript:ENST00000340855 CCDS14685.1 Length = 550 Score = 131 bits (330), Expect = 1e-30 Identities = 122/425 (28%), Positives = 1