Replicon Accession,Replicon Name,Locus tag,RefSeq Accession,RefSeq GI (protein ID),Category,Start,Stop,Gene name,altGeneName,Product name,altProteinName,Product Name Rating,Nucleotide Sequence,Amino Acid Sequence,comment,evidenceReferences,genomicContext,homology,structureFeature,pathway,ecNumber,functionClass,localization,localizationClassConfidence,geneOntology,tigrfamAccession,tigrfamName,tigrfamFunction,tigrfamIsologyType,tigrfamSignificance,tigrfamEcNumber,tigrfamRole,tigrfamSubRole,pfam,pfamDescription,cog,cogDescription,COG_Category,primaryFunctionClassID
NC_002516,Chromosome,PA0001,,15595199,Protein,483,2027,dnaA,,chromosomal replication initiator protein DnaA,,Class 2,GTGTCCGTGGAACTTTGGCAGCAGTGCGTGGATCTTCTCCGCGATGAGCTGCCGTCCCAACAATTCAACACCTGGATCCGTCCCTTGCAGGTCGAAGCCGAAGGCGACGAATTGCGTGTGTATGCACCCAACCGTTTCGTCCTCGATTGGGTGAACGAGAAATACCTCGGTCGGCTTCTGGAACTGCTCGGTGAACGCGGCGAGGGTCAGTTGCCCGCGCTTTCCTTATTAATAGGCAGCAAGCGTAGCCGTACGCCGCGCGCCGCCATCGTCCCATCGCAGACCCACGTGGCTCCCCCGCCTCCGGTTGCTCCGCCGCCGGCGCCAGTGCAGCCGGTATCGGCCGCGCCCGTGGTAGTGCCACGTGAAGAGCTGCCGCCAGTGACGACGGCTCCCAGCGTGTCGAGCGATCCCTACGAGCCGGAAGAACCCAGCATCGATCCGCTGGCCGCCGCCATGCCGGCTGGAGCAGCGCCTGCGGTGCGCACCGAGCGCAACGTCCAGGTCGAAGGTGCGCTGAAGCACACCAGCTATCTCAACCGTACCTTCACCTTCGAGAACTTCGTCGAGGGCAAGTCCAACCAGTTGGCCCGCGCCGCCGCCTGGCAGGTGGCGGACAACCTCAAGCACGGCTACAACCCGCTGTTCCTCTACGGTGGCGTCGGTCTGGGCAAGACCCACCTGATGCATGCGGTGGGCAACCACCTGCTGAAGAAGAACCCGAACGCCAAGGTGGTCTACCTGCATTCGGAACGTTTCGTCGCGGACATGGTGAAGGCCTTGCAGCTCAACGCCATCAACGAATTCAAGCGCTTCTACCGCTCGGTGGACGCACTGTTGATCGACGACATCCAGTTCTTCGCCCGTAAGGAGCGCTCCCAGGAGGAGTTCTTCCACACCTTCAATGCCCTTCTCGAAGGCGGCCAGCAGGTGATCCTCACCAGCGACCGCTATCCGAAGGAAATCGAAGGCCTGGAAGAGCGGCTGAAATCCCGCTTCGGCTGGGGCCTGACGGTGGCCGTCGAGCCGCCGGAACTGGAAACCCGGGTGGCGATCCTGATGAAGAAGGCCGAGCAGGCGAAGATCGAGCTGCCGCACGATGCGGCCTTCTTCATCGCCCAGCGCATCCGTTCCAACGTGCGTGAACTGGAAGGTGCGCTGAAGCGGGTGATCGCCCACTCGCACTTCATGGGCCGGCCGATCACCATCGAGCTGATTCGCGAGTCGCTGAAGGACCTGTTGGCCCTTCAGGACAAGCTGGTCAGCATCGACAACATCCAGCGCACCGTCGCCGAGTACTACAAGATCAAGATATCCGATCTGTTGTCCAAGCGGCGTTCGCGCTCGGTGGCGCGCCCGCGCCAGGTGGCCATGGCGCTCTCCAAGGAGCTGACCAACCACAGCCTGCCGGAGATCGGCGTGGCCTTCGGCGGTCGGGATCACACCACGGTGTTGCACGCCTGTCGTAAGATCGCTCAACTTAGGGAATCCGACGCGGATATCCGCGAGGACTACAAGAACCTGCTGCGTACCCTGACAACCTGA,MSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLTT,,6296774 ; 6234204 ; 2558436 ; 2106132 ; ,b3699-b3706 (Ecoli) ; ,74% similar to DnaA protein [Escherichia coli] ; ,PS01008: DnaA protein signature ; ,,,DNA replication, recombination, modification and repair ; ,Cytoplasmic,Class 3,GO:0003688 ;GO:0005524 ;GO:0003677 ;GO:0006275 ;GO:0006270 ;,TIGR00362 ,DnaA ,chromosomal replication initiator protein DnaA ,equivalog ,1.50E-169 ,No Data ,DNA metabolism ,"DNA replication, recombination, and repair" ,PF08299 PF00308 ,Bac_DnaA_C, Bacterial dnaA protein helix-turn-helix domain.. Bac_DnaA, Bacterial dnaA protein.. ,COG0593 , DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]. ,DNA replication, recombination, and repair 
NC_002516,Chromosome,PA0002,,15595200,Protein,2056,3159,dnaN,,DNA polymerase III, beta chain,,Class 2,ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCGCTGCAACTGGTCGCCGGCGTCGTGGAACGCCGCCAGACATTGCCGGTTCTCTCCAACGTCCTGCTGGTGGTCGAAGGCCAGCAACTGTCGCTGACCGGCACCGACCTCGAAGTCGAGCTGGTTGGTCGCGTGGTACTGGAAGATGCCGCCGAACCCGGCGAGATCACCGTACCGGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCGAACGACGTGCTGATCGACATCCGTGTCGAAGAGCAGAAACTTCTGGTGAAGGCCGGGCGTAGCCGCTTCACCCTGTCCACCCTGCCGGCCAACGATTTCCCCACCGTAGAGGAAGGTCCCGGCTCGCTGAACTTCAGCATTGCCCAGAGCAAGCTGCGTCGCCTGATCGACCGCACCAGCTTCGCCATGGCCCAGCAGGACGTGCGTTACTACCTCAACGGCATGCTGCTGGAAGTGAACGGCGGCACCCTGCGCTCCGTCGCCACCGACGGCCACCGACTGGCCATGTGCTCGCTGGATGCGCAGATCCCGTCGCAGGACCGCCACCAGGTGATCGTGCCGCGCAAAGGCATCCTCGAACTGGCTCGTCTGCTCACCGAGCAGGACGGCGAAGTCGGCATCGTCCTGGGCCAGCACCATATCCGTGCCACCACTGGCGAATTCACCTTCACTTCGAAGCTGGTGGACGGCAAGTTCCCGGACTACGAGCGTGTACTGCCGCGCGGTGGCGACAAGCTGGTGGTCGGTGACCGCCAGCAACTGCGCGAAGCCTTCAGCCGTACCGCGATCCTCTCCAACGAGAAGTACCGCGGCATTCGCCTGCAGCTTTCCAACGGTTTGCTGAAAATCCAGGCGAACAACCCGGAGCAGGAAGAGGCCGAGGAAGAAGTGCAGGTCGAGTACAACGGCGGCAACCTGGAGATAGGCTTCAACGTCAGTTACCTGCTCGACGTGCTGGGTGTGATCGGTACCGAGCAGGTCCGCTTCATCCTTTCCGATTCCAACAGCAGCGCCCTGGTCCACGAGGCCGACAATGACGATTCTGCCTATGTCGTCATGCCGATGCGCCTCTAA,MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVVMPMRL,,6458041 ; 6234204 ; 1349852 ; ,b3699-b3706 (Ecoli) ; ,92% similar to dnaN gene product of [P. putida] ; 71% similar to DNA polymerase III beta-subunit [Escherichia coli] ; ,PF00712: DNA polymerase III beta subunit ; ,Pyrimidine metabolism ; Purine metabolism ; ,2.7.7.7 ;,DNA replication, recombination, modification and repair ; ,Cytoplasmic,Class 3,GO:0006260 ;GO:0009360 ;GO:0003887 ;,TIGR00663 ,dnan ,"DNA polymerase III, beta subunit" ,equivalog ,9.30E-117 ,2.7.7.7 ,DNA metabolism ,"DNA replication, recombination, and repair" ,PF02768 PF02767 PF00712 ,DNA_pol3_beta_3, DNA polymerase III beta subunit, C-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.. DNA_pol3_beta_2, DNA polymerase III beta subunit, central domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.. DNA_pol3_beta, DNA polymerase III beta subunit, N-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.. ,COG0592 , DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]. ,DNA replication, recombination, and repair 
NC_002516,Chromosome,PA0003,,15595201,Protein,3169,4278,recF,,RecF protein,,Class 2,ATGTCCCTGACCCGCGTTTCGGTCACCGCGGTGCGCAACCTGCACCCGGTGACCCTCTCCCCCTCCCCCCGCATCAACATCCTCTACGGCGACAACGGCAGCGGCAAGACCAGCGTGCTCGAAGCCATCCACCTGCTGGGCCTGGCGCGTTCATTCCGCAGTGCGCGCTTGCAGCCGGTGATCCAGTATGAGGAAGCGGCCTGCACCGTATTCGGCCAGGTGATGTTGGCCAACGGCATCGCCAGCAACCTGGGGATTTCCCGTGAGCGCCAGGGCGAGTTCACCATCCGCATCGATGGGCAGAACGCCCGGAGTGCGGCTCAATTGGCGGAAACTCTCCCACTGCAACTGATCAACCCGGACAGCTTTCGGTTGCTCGAGGGAGCGCCGAAGATCCGGCGACAGTTCCTCGATTGGGGAGTGTTCCACGTGGAACCTCGGTTTCTGCCCGTCTGGCAGCGCCTGCAGAAGGCGCTGCGCCAGCGGAACTCCTGGCTCCGGCATGGTAAACTGGACCCCGCGTCGCAAGCGGCCTGGGACCGGGAATTGAGCCTGGCCAGCGATGAGATCGATGCCTACCGCAGAAGCTATATCCAGGCGTTGAAACCGGTATTCGAGGAAACACTCGCCGAATTGGTTTCACTGGATGACCTGACCCTTAGCTACTACCGAGGCTGGGACAAGGACCGGGACCTCCTGGAGGTTCTGGCTTCCAGCCTGTTGCGCGACCAGCAGATGGGCCACACCCAGGCGGGACCGCAGCGTGCGGATCTTCGCATACGGTTGGCAGGTCATAACGCCGCGGAGATTCTCTCGCGCGGTCAGCAGAAGCTGGTGGTATGCGCCCTGCGCATCGCCCAAGGCCATCTGATCAATCGCGCCAAGCGCGGACAGTGCGTCTACCTGGTGGACGACCTGCCCTCGGAACTGGATGAGCAGCATCGAATGGCTCTTTGCCGCTTGCTTGAAGATTTGGGTTGCCAGGTATTCATCACCTGCGTGGACCCGCAACTATTGAAAGACGGCTGGCGCACGGATACGCCGGTATCCATGTTCCACGTGGAACATGGAAAAGTCTCTCAGACCACGACCATCGGGAGTGAAGCATGA,MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVSQTTTIGSEA,,2540413 ; 1542576 ; ,b3699-b3706 (Ecoli) ; ,59% similar to RecF protein [Escherichia coli] ; 90% similar to RecF protein [Pseudomonas putida] ; ,PS00617: RecF protein signature 1 ; ,,,DNA replication, recombination, modification and repair ; ,Cytoplasmic,Class 3,GO:0006260 ;GO:0009432 ;GO:0003697 ;GO:0006281 ;GO:0005524 ;GO:0006310 ;,TIGR00611 ,recf ,DNA replication and repair protein RecF ,subfamily ,1.10E-139 ,No Data ,DNA metabolism ,"DNA replication, recombination, and repair" ,PF02463 ,SMC_N, RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.. ,COG1195 , RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]. ,DNA replication, recombination, and repair 
NC_002516,Chromosome,PA0004,,15595202,Protein,4275,6695,gyrB,,DNA gyrase subunit B,,Class 2,ATGAGCGAGAACAACACGTACGACTCTTCCAGCATCAAGGTGCTGAAGGGGCTGGATGCCGTACGCAAGCGCCCCGGCATGTACATCGGCGACACCGACGATGGCACCGGTCTGCACCACATGGTGTTCGAGGTGGTGGATAACTCCATCGACGAAGCGCTGGCCGGTTACTGCAGCGAAATCAGCATCACCATCCATACGGATGAGTCGATCACTGTCCGCGACAATGGACGCGGTATTCCGGTGGATATCCACAAGGAAGAAGGGGTTTCTGCGGCGGAAGTGATCATGACCGTCCTCCACGCCGGCGGCAAGTTCGACGACAACACCTACAAGGTGTCCGGCGGCTTGCACGGTGTGGGCGTCTCGGTGGTGAACGCGCTGTCCCATGAACTACGCCTGACCATCCGTCGCCACAACAAGGTCTGGGAACAGGTCTACCACCACGGCGTTCCGCAGTTCCCACTGCGCGAAGTGGGCGAGACCGATGGCTCCGGCACCGAAGTTCACTTCAAGCCGTCCCCGGAGACCTTCAGCAACATCCACTTCAGTTGGGACATCCTGGCCAAGCGCATCCGCGAGCTGTCCTTCCTCAACTCCGGCGTCGGCATCCTGCTGCGCGACGAGCGTACCGGCAAGGAGGAGCTGTTCAAGTACGAAGGCGGTCTGAAGGCCTTCGTCGAGTACCTGAACACCAACAAGACCGCGGTGAACGAGGTATTCCACTTCAACGTCCAGCGTGAAGAGGACGGCGTGGGTGTGGAAGTCGCCTTGCAGTGGAACGACAGCTTCAACGAGAACCTGCTCTGCTTCACCAACAACATCCCGCAGCGTGACGGCGGCACCCACCTGGCCGGTTTCCGTTCGGCGCTGACGCGTAACCTGAACAACTACATCGAGGCCGAAGGCCTGGCGAAGAAGTTCAAGATCGCCACCACCGGCGACGATGCCCGCGAAGGCCTCACCGCGATCATCTCGGTGAAGGTACCGGACCCGAAGTTCAGCTCGCAGACCAAGGACAAGCTGGTCTCCTCCGAGGTGAAGACTGCGGTGGAACAGGAGATGGGCAAGTACTTCGCCGACTTCCTGCTGGAGAATCCCAACGAAGCCAAGGCCGTGGTCGGCAAGATGATCGACGCCGCCCGTGCCCGCGAGGCCGCGCGCAAGGCGCGCGAGATGACCCGCCGCAAGGGCGCGCTGGACATCGCCGGCCTGCCCGGCAAACTGGCCGATTGCCAGGAAAAGGACCCGGCGCTCTCCGAACTGTACATCGTGGAGGGTGACTCCGCGGGCGGTTCCGCCAAGCAGGGCCGCAATCGCCGGACCCAGGCGATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAAAAGGCGCGCTTCGACAAGATGCTCTCCTCCCAGGAGGTCGGTACGCTGATCACCGCCCTGGGCTGTGGCATCGGCCGCGAGGAATACAACATCGACAAGCTGCGCTACCACAACATCATCATCATGACCGATGCTGACGTCGACGGTTCGCACATCCGCACCCTGCTGTTGACCTTCTTCTTCCGCCAGATGCCCGAGCTGATCGAGCGTGGCTACATCTACATCGCCCAGCCCCCGTTGTACAAGGTCAAGCGCGGCAAGCAGGAGCAGTACATCAAGGACGACCAGGCCATGGAAGAGTACATGACCCAGTCGGCCCTGGAAGACGCCAGCCTGCACGTCAACGAGCACGCTCCGGGCCTGTCCGGGGCGGCGCTGGAGAAACTGGTCAACGAGTATCGCGGGGTGATCGCCACCCTCAAGCGCCTGTCGCGCCTGTACCCCCAGGAGCTGACCGAGCACTTCATCTACCTGCCTACCGTGTCGGTGGACGACCTGGCTAACGAGTCGGCCATGCAGGGCTGGTTGGAGAAGTTCCAGGCGCGCCTGACCGCCGCCGAGAAGTCCGGCCTGACCTACAAGGCCAGCCTGCGCGAAGACCGCGAGCGCCACCTGTGGCTGCCCGAGGTGGAACTGGTGGCCCACGGCCTGTCCAGCTACGTCACCTTCAACCGTGACTTCTTCGCCAGCAATGACTACCGCTCGGTGTCGCTGCTCGGCGACCAGCTGAACAGCCTGCTGGAAGACGGCGCCTACGTGCAGAAGGGTGAGCGCAAGCGCCCGATCAGCGCCTTCAAGGACGGCCTGGACTGGCTGATGGCCGAAGGTACCAAGCGCCACAGCATCCAGCGATACAAGGGGCTGGGCGAGATGAACCCTGAGCAGCTGTGGGAAACCACCATGGATCCGAACGTCCGGCGCATGCTCAAGGTGACCATCGAGGATGCCATCGCCGCCGACCAGATCTTCAACACCCTGATGGGCGATGCCGTGGAGCCGCGCCGCGACTTCATCGAAAGCAACGCGCTGGCGGTGTCGAACCTGGACGTGTGA,MSENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEELFKYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTAAEKSGLTYKASLREDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGERKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALAVSNLDV,,2540413 ; 7793912 ; 9869566 ; ,b3699-b3706 (Ecoli) ; ,82% similar to gyrB gene product [E. coli] ; 92% similar to DNA gyrase [Pseudomonas putida] ; ,PS00177: DNA topoisomerase II signature ; ,,5.99.1.3 ;,DNA replication, recombination, modification and repair ; ,Unknown,Class 3,GO:0003918 ;GO:0006265 ;GO:0009330 ;GO:0009387 ;,TIGR01059 ,gyrB ,"DNA gyrase, B subunit" ,equivalog ,0 ,5.99.1.3 ,DNA metabolism ,"DNA replication, recombination, and repair" ,PF00986 PF02518 PF00204 ,DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus. The amino terminus of eukaryotic and prokaryotic DNA topoisomerase II are similar, but they have a different carboxyl terminus. The amino-terminal portion of the DNA gyrase B protein is thought to catalyse the ATP-dependent super-coiling of DNA. See pfam00204. The carboxyl-terminal end supports the complexation with the DNA gyrase A protein and the ATP-independent relaxation. This family also contains Topoisomerase IV. This is a bacterial enzyme that is closely related to DNA gyrase,.. HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.. DNA_gyraseB, DNA gyrase B. This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to pfam01119.. ,COG0187 , GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]. ,DNA replication, recombination, and repair 
NC_002516,Chromosome,PA0005,,15595203,Protein,7791,7018,lptA,plsC ;,lysophosphatidic acid acyltransferase, LptA,,Class 1,ATGTCGACAGTGCAGGCCATCAGAACCGTCCTCTTTTACCTGCTGCTGTCCGCCAGCGCGTTCGTCTGGGGCACCCTCAGCTTCTTCATCGCGCCGATCCTGCCGTTCCGCGCCCGCTACCGCTTCGTGGTACAGAACTGGTGCCGCTTCGCGATCTGGCTGACCCGCGTGGTCGCCGGCATCCGCTACGAGGTGCGCGGACTGGAGAACATCCCGGAAAAGCCCTGCGTGATCCTCTCCAAGCACCAGAGCACCTGGGAAACCTTCTTCCTCTCCGGCTTCTTCGAGCCACTCAGCCAGGTACTCAAGCGCGAGCTGCTCTACGTGCCGTTCTTCGGCTGGGCCCTGGCCCTGCTCAAGCCCATCGCCATCGACCGCAGCCAGCCCAAGCTGGCCCTCAAGCAACTGGCCAAGCAGGGCGACGAGTGCCTGAAGAAAGGCGCCTGGGTGCTGATCTTCCCGGAAGGCACGCGTATTCCGGTGGGGCAGATGGGCAAGTTCTCCCGCGGCGGCACCGCCCTGGCGGTCAACGCCGGGCTACCGGTACTGCCGATCGCCCACAACGCCGGGCAGTATTGGCCCAAGGCCGGCTGGGCCAAGTACCCGGGCACCATCCAGGTGGTGATCGGCCCGGCCATGCACGCCGAAGGCGAAGGCCCGCGCGCCATCGCCGAGCTAAACCAGCGCGCCGAAGCCTGGGTCAGCGAGACCATGGCCGAGATCAGCCCCATCCAGCAGCGGGTCAGCCATCCGGAGCCGTCGGTGGTCTCGTGA,MSTVQAIRTVLFYLLLSASAFVWGTLSFFIAPILPFRARYRFVVQNWCRFAIWLTRVVAGIRYEVRGLENIPEKPCVILSKHQSTWETFFLSGFFEPLSQVLKRELLYVPFFGWALALLKPIAIDRSQPKLALKQLAKQGDECLKKGAWVLIFPEGTRIPVGQMGKFSRGGTALAVNAGLPVLPIAHNAGQYWPKAGWAKYPGTIQVVIGPAMHAEGEGPRAIAELNQRAEAWVSETMAEISPIQQRVSHPEPSVVS,,16079332 ; 15687295 ; 9299423 ; ,,56% similar to putative 1-acyl-sn-glycerol-3-phosphate acyltransferase [Rickettsia prowazekii] ; 44% similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase [Mus musculus] ; 28% identity with PlsC [Escherichia coli] ; 36% identity with NlaB [Nesseria meningitidis] ; ,1 predicted transmembrane helices (TMHMM v.2.0) ; At least one transmembrane helix predicted by Phobius ; ,phospholipid biosynthesis ; ,2.3.1.51 ;,Fatty acid and phospholipid metabolism ; ,Cytoplasmic Membrane,Class 3,,TIGR00530 ,AGP_acyltrn ,1-acyl-sn-glycerol-3-phosphate acyltransferases ,subfamily_domain ,1.30E-21 ,2.3.1.51 ,Fatty acid and phospholipid metabolism ,Biosynthesis ,PF01553 ,Acyltransferase, Acyltransferase. This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene.. ,COG0204 , PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]. ,Lipid metabolism 
NC_002516,Chromosome,PA0006,,15595204,Protein,8339,7803,,yaeD ;,conserved hypothetical protein,,Class 4,ATGTCCCGTTCCCTGCTGATTCTCGACCGCGATGGAGTCATCAACCTCGACTCCGACGATTACATCAAGACCCTCGACGAGTGGATCCCCATCCCCAGCTCGATCGAGGCCATCGCCCGCCTGAGCCAGGCCGGCTGGACCGTCGCGGTGGCTACCAACCAGTCCGGCATCGCCCGTGGCTATTACGACCTGGCAGTGCTCGAGGCCATGCATGCGCGCTTGCGCGAACTGGTCGCGGAGCAGGGCGGCGAGGTCGGCCTCATCGTCTATTGTCCGCATGGACCGGACGACGGTTGCGACTGCCGCAAGCCGAAGCCGGGTATGCTGCGGCAGATCGGCGAGCACTACGGGGTCGATCTGTCGGGTATCTGGTTCGTCGGCGACAGCATCGGTGACCTGGAGGCGGCGCGGGCCGTCGATTGTCAGCCGGTATTGGTAAAGACCGGAAAAGGTGTACGTACGCTGGGCAAGCCCTTGCCAGAGGGCACCCTGATATTCGACGATCTGGCGGCAGTCGCCAGCGCATTACTTCAGTAA,MSRSLLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDGCDCRKPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDCQPVLVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ,,,,56% similar to putative phosphatase YaeD [Escherichia coli] ; ,,,,,Cytoplasmic,Class 3,,TIGR01656 ,Histidinol-ppas ,histidinol-phosphate phosphatase family domain ,No Data ,4.20E-55 ,No Data ,No Data ,No Data ,PF08645 PF00702 ,PNK3P, Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.. Hydrolase, haloacid dehalogenase-like hydrolase. This family are structurally different from the alpha/ beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment. The rest of the fold is composed of the core alpha/beta domain.. ,COG0241 , HisB, Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]. ,Amino acid transport and metabolism 
NC_002516,Chromosome,PA0007,,15595205,Protein,8671,10377,,,hypothetical protein,,Class 4,GTGAAACGCCTGAAAAAGACACTGCACCTTTCAAGCTTGTCCCTCGCTTCCCTGGCTCTTTCTTCCGCCGCCCTGGCGGCCGCTCCGGTCATGCTCGACCAGGGCAAGGAATGGACCGAAAGCCACCGCCAGGACTTCTACAGCCGCGACCAGGGCTCGCAGGTGATGCCCCTGCCCTGGCTCAAGGCGTTGCGACAGCCGGATGGAACGCCTTTCCTCGCCGACAGCCTGGCCCGCTACGGCTATTTGCCCAACCCCAAGGCGCCCGCGGAAGGCCTGCCGGTGGGCTTCACCGTAGCCGGCACGGGCGCCCGGCAGATGGTCGGCATGACCTGTTCGGCCTGCCATACCCGGCAGATCGAGGTGAAGGGCACTGCCTATCGGATCGACGGCGGTCCGGCGATCGTCGACTTCCAGGCATTCCTCGCCGACCTCGATCGGGCCGTGGGACCGCTGACCAGCGATGACGCCGCCTTCGACGCCTTCGCCAAGCCGATCCTCGGGGCCAATCCGCCTCCCGGTGCGCGCGACGCTCTGCTCGCGGCGGTGAAGGAATGGTACGAGCCCTATCACACGCTGATCGAGCGCGCGCTGCCCAAGGACACCTGGGGACCGGCGCGGCTGGACGCGGTATCGATGATCTTCAACCGCCTTACCGGGCTGGATATCGGCACCGCGCCGCCCTACCTGATTCCCGACAACATCAAGGCGGCCGATGCGCCGGTGCGCTATCCGTTCCTGTGGAACGCGGCGCGGCAGAACAAGACCCAGTGGCCCGGCTTCGCCGCCAACGGCAACGACCTGCTCGGCCTGGCGCGCAATGTCGGCGAGGTCTACGGGGTGTTCGCCACCTTCCACCCGCAGAAGAGCAAGTTCCACCTGCTGGGCATGGACTACCTGAAGATCAACTCGGCCAACTTCCACGGGCTGGGCAAGCTGGAAGACCTGATCAAGAAGATCGGCCCGCCGAAGTGGCCCTGGGCGGTGGACAAGCACCTGGCCAGGAAAGGCGCGCTGATCTTCGCCCGCAAGACCGACGAAGGTGGCTGCGTGGAGTGCCACGGCATCCGGATCAAGGACCTGGTGCTTTGGGACACTCCGCTGAGGGACGTCGGCAGCGACAGCCGCCAGCACGCCATCCTCGATGGCCAGGTGCAGACCGGCGTGATGGAGGGCGCGCGGATGCCGTTCGGCCAGCCGCTGAAGGCGACCGACGGAGCCTTCGATGTACTCGCCGTAGCGGTGGCCGGTTCGATCCTGCAGCACTTCGTGCCGATCCTCGGTGAGAAGCACGATGCCAAGGCGGCGGCGGTCAAGCCGGAAAGCGTGATGACCGACGAAACCCGGCAACTGCTGACCGCCTTCCAGAAGCCGGTGCGTACCCAGGCCGACCCCTACCCCTACGAGTCGCGGGTCCTGCAGGGGATCTGGGCAGCGGCGCCGTACCTGCACAACGGCTCGGTGCCGACCCTGGAAGAGTTGCTGAAGCCGGCCGCGGAGCGGGTGGAATCCTTCCCGGTGGGCTCGGCCTACGACGTGGACAAGGTCGGCCTCGCCGCCCAGCAGACCCAATTCGGCAGCTATGTGCTGAAGACCACCGGCTGCGAGCAGCGTGATTCCGGCAACAGCCGCTGCGGCCATGAGTACGGCACCAGCCTGTCGGCCGAGGAGAAGCGTGCGCTGCTGGAGTATCTGAAGGTCCTGTAG,MKRLKKTLHLSSLSLASLALSSAALAAAPVMLDQGKEWTESHRQDFYSRDQGSQVMPLPWLKALRQPDGTPFLADSLARYGYLPNPKAPAEGLPVGFTVAGTGARQMVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFDAFAKPILGANPPPGARDALLAAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRLTGLDIGTAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVGEVYGVFATFHPQKSKFHLLGMDYLKINSANFHGLGKLEDLIKKIGPPKWPWAVDKHLARKGALIFARKTDEGGCVECHGIRIKDLVLWDTPLRDVGSDSRQHAILDGQVQTGVMEGARMPFGQPLKATDGAFDVLAVAVAGSILQHFVPILGEKHDAKAAAVKPESVMTDETRQLLTAFQKPVRTQADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVGSAYDVDKVGLAAQQTQFGSYVLKTTGCEQRDSGNSRCGHEYGTSLSAEEKRALLEYLKVL,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 26) ; type I export signal computationally predicted by Phobius (cleavage after residue 26) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 26) ; ,,,Membrane proteins ; Hypothetical, unclassified, unknown ; ,Periplasmic,Class 3,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0008,,15595206,Protein,12488,10434,glyS,,glycyl-tRNA synthetase beta chain,,Class 2,ATGAGCGCCAAGGATTTCCTGGTCGAACTGGGCACCGAAGAGCTGCCGCCAAAAGCCCTCAACAGCCTCGGCGAAGCCTTCCTCAGCGGTATCGAGAAGGGCCTCAAGGCTGCCGGTCTGAGCTATGCCGCTGCGCGTTTCTATGCGGCGCCGCGCCGTCTCGCCGTGCTGGTCGAGCAACTCGCCGTGCAGCAGCCCGACCGTACCGTCAACCTAGACGGTCCGCCGCTACAGGCCGCCTTCGACGCCAGCGGTAACCCGACCCAGGCCGCCCTGGGCTTCGCCAAGAAGTGCGGCGTGGATCTGCAGCAGATCGACAAGAGCGGTCCGAAGCTGCGCTTCATCCAGACCATCGCCGGCCAACCGGCCGCCGGCCTGCTGCCGGGCATCGTCGAGGCCTCGTTGAACGAACTGCCGATTCCCAAGCGGATGCGCTGGGCAGCTCGCCGCGAGGAGTTCGTGCGTCCGACCCAATGGCTGGTGATGCTGTTCGGCGACGATGTGGTCGAGTGCGAGATCCTCGCCCAGAAAGCCGGGCGCGAATCCCGTGGCCACCGCTTCCACAATCCGGACAATGTGCGTATTTCCAGCCCGGCAGCGTATCTGGAAGACCTGCGCGGCGCTCATGTGCTGGCCGATTTCGCCGAGCGCCGCGAGCTGATCGCCAAGCGCGTGGCCGAACTGGCCGCCGAGCAACAGGGCAGCGCCATCGTGCCGCCGAGCCTGCTCGACGAAGTGACTGCACTGGTCGAGTGGCCGGTGCCGCTGGTCTGCTCCTTCGAGGAGCGCTTCCTCGAGGTCCCGCAGGAAGCCCTGATCACCACCATGCAGGACAACCAGAAATACTTCTGCCTGCTGGACGCCAACGGCAAGCTGCTGCCTCGCTTCATCACCGTCGCCAACGTCGAGAGCAAGGCGCCGGAGAACATCGTCAGCGGTAACGAGAAGGTGGTTCGCCCGCGCCTCACCGACGCCGAGTTCTTCTTCAAGCAGGACAAGAAGCAGCCGCTCGAAAGCTTCAATGAGCGCCTGCGCAACGTAGTGTTCCAGGCCCAGCTCGGCACCGTGTTCGAGAAGGCCCAGCGCGTCTCCGGCCTGGCCGCCTACATCGCCGAACGTATAGGCGGCAATGCGCAGAACGCCTCGCGCGCCGGCATCCTGTCCAAGTGTGACCTGGCGACCGAGATGGTCGGCGAGTTCCCCGAAATGCAGGGCATCGCCGGCTACTACTACGCCACCCACGGCGGCGAAGCGGAAGACGTCGCCCTGGCCCTCAACGAGCAGTACATGCCGCGCGGCGCCGGCGCCGAGCTACCCTCGACCCTGACCGGCGCCGCCGTGGCGGTGGCCGACAAGCTCGATACCCTGGTCGGTATCTTCGGCATCGGCATGCTTCCCACCGGCAGCAAGGACCCCTACGCGCTGCGCCGCGCTGCGCTGGGCGTGCTGCGCATCCTCATCGAGAAGCAGCTCGACCTGGACCTGGTAGCCGCGGTCAACGCCGCCGTCGAGCAATACGGCGACAAGGTCAAGGCCGCCGGCCTGGCCGAGCAGGTGCTGGACTTCGTGTTCGACCGCCTGCGCGCGCGCTACGAGGACGAAGGCGTGGACGTGGCCGTGTACCAGTCGGTGCGCGCGCTCAAGCCAAGCTCGCCGCTGGACTTCGACCAGCGCGTACAGGCCGTCCAGGCCTTCCGCCAGTTGCCTGAAGCCGAGGCCCTGGCCGCGGCGAACAAACGGGTGTCGAATATTCTCGCCAAGTCCGAGGACGAGGTTCCGCCGAACGTGGATGCCAGCCTGCTGGTGGAAGCCGCCGAGAAGGCCCTGGGCAGCGCCGTGGCGAACGCCGAAAGCGAAGTCGCGCCGCTGGCAGCGGCACGCGACTATCGCGCCGCGCTGGCCCGCCTGGCGGCCTTGCGCGAGCCGGTGGATACGTTCTTCGCCGATGTGATGGTCAATGTCGACGACGCGGCGGTGCGCGCCAACCGCTATGCGCTGCTGGCCAAGCTGCGCGGGTCGTTCCTCGGGGTGGCGGACATCTCGCTGCTCGGCTGA,MSAKDFLVELGTEELPPKALNSLGEAFLSGIEKGLKAAGLSYAAARFYAAPRRLAVLVEQLAVQQPDRTVNLDGPPLQAAFDASGNPTQAALGFAKKCGVDLQQIDKSGPKLRFIQTIAGQPAAGLLPGIVEASLNELPIPKRMRWAARREEFVRPTQWLVMLFGDDVVECEILAQKAGRESRGHRFHNPDNVRISSPAAYLEDLRGAHVLADFAERRELIAKRVAELAAEQQGSAIVPPSLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDANGKLLPRFITVANVESKAPENIVSGNEKVVRPRLTDAEFFFKQDKKQPLESFNERLRNVVFQAQLGTVFEKAQRVSGLAAYIAERIGGNAQNASRAGILSKCDLATEMVGEFPEMQGIAGYYYATHGGEAEDVALALNEQYMPRGAGAELPSTLTGAAVAVADKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIEKQLDLDLVAAVNAAVEQYGDKVKAAGLAEQVLDFVFDRLRARYEDEGVDVAVYQSVRALKPSSPLDFDQRVQAVQAFRQLPEAEALAAANKRVSNILAKSEDEVPPNVDASLLVEAAEKALGSAVANAESEVAPLAAARDYRAALARLAALREPVDTFFADVMVNVDDAAVRANRYALLAKLRGSFLGVADISLLG,,6290471 ; 6309809 ; ,glyQS (Ecoli) ; ,64% similar to glycyl-tRNA synthetase beta subunit [Escherichia coli] ; ,,Glycine, serine and threonine metabolism ; Aminoacyl-tRNA biosynthesis ; ,6.1.1.14 ;,Amino acid biosynthesis and metabolism ; Translation, post-translational modification, degradation ; ,Cytoplasmic,Class 3,GO:0009345 ;GO:0005737 ;GO:0004820 ;GO:0006426 ;,TIGR00211 ,glyS ,"glycyl-tRNA synthetase, beta subunit" ,equivalog_domain ,2.70E-238 ,6.1.1.14 ,Protein synthesis ,tRNA aminoacylation ,PF05746 PF02092 ,DALR_1, DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.. tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit.. ,COG0751 , GlyS, Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0009,,15595207,Protein,13435,12488,glyQ,,glycyl-tRNA synthetase alpha chain,,Class 2,GTGAGCCAGACTACGCCCGCCGTGCGCACCTTCCAAGACCTGATTCTCGCCCTGCAGAACTACTGGGCAGAGCAGGGCTGCGTGGTGCTGCAGCCCTACGACATGGAAGTGGGCGCCGGCACCTTCCACACCGCCACCTTCCTCCGCGCCATCGGCCCGGAGACCTGGAACGCCGCCTACGTCCAGCCGAGCCGCCGCCCCACCGACGGTCGCTACGGCGAGAACCCCAACCGCCTGCAGCACTACTACCAGTTTCAGGTGGTCCTGAAGCCGAACCCGGAGAACTTCCAGGAGCTGTACCTCGGCTCGCTGAAAGCCATCGGCATCGACCCGCTGGTCCACGACATCCGCTTCGTCGAGGACAACTGGGAGTCGCCGACCCTCGGCGCCTGGGGCCTGGGTTGGGAAATCTGGCTGAACGGCATGGAAGTCACCCAGTTCACCTACTTCCAGCAGGTCGGCGGCATCGAGTGCTATCCGGTCACCGGCGAGATCACCTACGGCCTGGAGCGCCTGGCCATGTACCTGCAGGGCGTGGACTCGGTCTACGACCTGGTCTGGACCGACGGCCCGTTCGGCAAGGTCACCTATGGCGACGTGTTCCACCAGAACGAGGTGGAGCAATCCACTTTCAACTTCGAGCACGCCAACGTGCCGAAGCTGTTCGAACTGTTCGACTTCTACGAAAGCGAAGCCAACCGCCTGATCGCGCTGGAGCTGCCGTTGCCGACCTACGAGATGGTCCTCAAGGCTTCGCATACCTTCAACCTGCTGGATGCGCGGCGCGCCATCTCGGTCACCGAGCGCCAGCGCTACATCCTTCGCGTGCGTACCCTGGCCCGCGCCGTGGCGCAGAGCTACCTGCAGGCCCGCGCGCGCCTCGGCTTCCCCATGGCCACCCCCGAATTGCGTGACGAAGTACTGGCCAAGCTGAAGGAGGCCGAATGA,MSQTTPAVRTFQDLILALQNYWAEQGCVVLQPYDMEVGAGTFHTATFLRAIGPETWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVLKPNPENFQELYLGSLKAIGIDPLVHDIRFVEDNWESPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGIECYPVTGEITYGLERLAMYLQGVDSVYDLVWTDGPFGKVTYGDVFHQNEVEQSTFNFEHANVPKLFELFDFYESEANRLIALELPLPTYEMVLKASHTFNLLDARRAISVTERQRYILRVRTLARAVAQSYLQARARLGFPMATPELRDEVLAKLKEAE,,6290471 ; 6309809 ; ,glyQS (Ecoli) ; ,86% similar to glycine-tRNA synthetase, alpha subunit [Escherichia coli] ; ,,Glycine, serine and threonine metabolism ; Aminoacyl-tRNA biosynthesis ; ,6.1.1.14 ;,Amino acid biosynthesis and metabolism ; Translation, post-translational modification, degradation ; ,Cytoplasmic,Class 2,GO:0009345 ;GO:0006426 ;GO:0005737 ;GO:0004820 ;,TIGR00388 ,glyQ ,"glycyl-tRNA synthetase, alpha subunit" ,equivalog_domain ,5.30E-169 ,6.1.1.14 ,Protein synthesis ,tRNA aminoacylation ,PF02091 ,tRNA-synt_2e, Glycyl-tRNA synthetase alpha subunit.. ,COG0752 , GlyQ, Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0010,,15595208,Protein,13540,14091,tag,,DNA-3-methyladenine glycosidase I,,Class 2,ATGCCACGCTGCTTCTGGTGCAACGACGATCCCCTCTACATGGCCTACCACGATGAGGAGTGGGGTGTGCCGCAGCGCGATCCCGACGCGCTGTTCGAACTTCTGCTGCTGGAGGGCTTCCAGGCCGGATTGTCCTGGATCACCGTGCTGAAGAAGCGCGAGCGCTACCGCGAGGTGCTGTTCGGCTTCGACGTGCAGCGGGTGGCACAGATGAGCGACGCGGAGATCGACGAACTGATGCTCGACCCCGGCATCATTCGCAATCGGGCCAAGCTCAACGCTGCGCGGCAGAACGCCCAGGCCTGGCTGGAGCTGGACGACCCGGCTGGGTTCCTCTGGTCCTTCGTCGGCGGCCAGCCGAAGATCAACCATTTCGCCGGTCGCGCCGAGGTGCCGGCGATTACCCCGGAAGCCGAGGCCATGAGCAAGGCGCTGCGCAAGGCCGGCTTCAACTTCGTCGGGCCGACCATCTGCTACGCCTTCATGCAGGCCAGCGGCATGGTCATGGACCATACCCAGGACTGCGACCGTTACGCCCAACTCGTCGGCTAG,MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPAGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG,,15687295 ; 3520491 ; 3536912 ; 8941728 ; ,,66% similar to 3-methyladenine-DNA glycosylase I (tag) [E. coli] ; 88% similar to tag gene product [Pseudomonas fluorescens] ; ,0 predicted transmembrane helices (TMHMM v.2.0) ; At least one transmembrane helix predicted by Phobius ; ,,3.2.2.20 ;,DNA replication, recombination, modification and repair ; ,Cytoplasmic,Class 3,GO:0006281 ;GO:0008725 ;,TIGR00624 ,tag ,DNA-3-methyladenine glycosylase I ,subfamily ,1.20E-130 ,3.2.2.20 ,DNA metabolism ,"DNA replication, recombination, and repair" ,PF03352 ,Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.. ,COG2818 , Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]. ,DNA replication, recombination, and repair 
NC_002516,Chromosome,PA0011,,15595209,Protein,14235,15122,,,probable 2-OH-lauroyltransferase,,Class 3,GTGGAGAAATTCAAAGGTGCCCTGGTGGTGGGGGCCCTACGCCTGTTCGCGTTATTGCCCTGGCGTGCCGTGCAAGGCGTCGGGGCCGGCATAGGCTGGCTGATGTGGAAATTGCCGAATCGATCCCGCGAGGTAGTGCGGATCAACCTGTCCAAGTGCTTCCCCGAGTTGTCTGAAACCGAACTGGAAAAGCTGGTCGGACAAAGCCTGATGGATATTGGCCGGACCCTCACCGAAAGTGCCTGCGCCTGGATCTGGCCGCCTGAAAAGTCGCTGAGATACATCCGCGAGGTCGAAGGCATGGAGGTGCTGGAGGAAGCGCTGGCTTCCGGCGATGGCCTGGTCGGCATTACCAGTCACCTGGGAAACTGGGAAGTACTCAACCACTTCTATTGCTCCTACGCCAAGCCGATCATCTTCTATCGTCCGCCCAAGCTGAAGGCAGTGGACGAGTTGCTGAAGAAGCAACGCGTGCAATTGGGCAATCGCGTCGCACCTTCCACTCCGGAGGGTATCCTCAGTGTCATCAAGGAAGTGAAGAAAGGCGGTTGCGTAGGGATTCCCGCCGACCCCGAGCCCGCGCGTACCGCTGGGCTCTTCGTGCCCTACCTGGGCACCACTGCATTGATCAGCAAGTTCGTCCCGCAGTTGCTTTCACGCGGCAAGGCGCGTGGAGTGTTCTTCCATGCGGTGCGCCTGCCCGATGGTAGCGGTTACAAGGTGATCCTCGAAGCGGCTCCGGCGGACATGTACGACAAGGACCTGGAAGTGTCTGTAGCAGCCATGAGCCGCGAGTTGGCGAAGTATGTACGAGCCTATCCCAGCCAGTACATGTGGAGCATGAAGCGCTTCAAGAACCGCCCGGATGGCGAGAAAAAATGGTATTGA,MEKFKGALVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSETELEKLVGQSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSHLGNWEVLNHFYCSYAKPIIFYRPPKLKAVDELLKKQRVQLGNRVAPSTPEGILSVIKEVKKGGCVGIPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGYKVILEAAPADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFKNRPDGEKKWY,,2203778 ; 1904818 ; 7961456 ; ,,88% similar to htrB gene product [Pseudomonas fluorescens] ; 45% similar to HtrB protein [Escherichia coli] ; ,,Lipopolysaccharide biosynthesis ; ,2.3.1.- ;,Cell wall / LPS / capsule ; ,Cytoplasmic Membrane,Class 2,GO:0008415 ;GO:0009245 ;,TIGR02207 ,lipid_A_htrB ,lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase ,subfamily ,1.60E-15 ,2.3.1.- ,Cell envelope ,Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides ,PF03279 ,Lip_A_acyltrans, Bacterial lipid A biosynthesis acyltransferase.. ,COG1560 , HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]. ,Cell envelope biogenesis, outer membrane 
NC_002516,Chromosome,PA0012,,15595210,Protein,15207,15473,,,hypothetical protein,,Class 4,ATGGATAATCAACGACAATACCCACGAACCCCGCTCAAGTGCCGAATCCGTATCAGTCACCCGTTATTTGGCGAGCTGATGGCGCAGACACGCGACCTCTCCGACACCGGGGTCTATGTCAAACACCCGGATCTGACCCAGCTCCCAACAGGCAGTGTCGTTACTGGCCAGGTACAGGATCTGCCGATCGACGCGCCGATCCTGCAGATGGAAGTCGTGCGAGTCGATGCGGAAGGCGTCGGCCTGCGCTTTCTCAGCGAAGCCTGA,MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA,,,,,,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,,,,,,,,,,PF07238 ,PilZ, PilZ domain. This domain is found in a wide variety of bacterial signalling proteins.. ,,,
NC_002516,Chromosome,PA0013,,15595211,Protein,15620,16273,,yhhQ ;,conserved hypothetical protein,,Class 4,ATGTCAGCCTCTTCTCCGGCGGCCTGGCGCGGCACCCTGGCCGGCCTGATCGCCTTCCACATCTTCATCATCATCGCCAGCAACTACCTGGTGCAGTTGCCGATCACCCTGTTTGGCTGGCACACCACCTGGGGCGCCTTCAGCTTTCCGTTCATCTTCCTGGCTACCGACCTCACCGTGCGCTTGCTGGGCAAGGGCCCTGCCCGGCTGGTCATCGCCCGGGTCATGATCCCGGCGTTGATCGCCTCCTACGTGGTCTCGGTGTTGTTCCAGGAAGCGGCGTTCCGTGGTTTCTCCGCGCTGCTGGAGTTCAACACCTTCGTCGCACGGATATCCCTGGCAAGCTTCCTCGCCTATGTGCTCGGGCAGATCCTCGACATCCAGGTATTCGACCGCCTCCGTCGTTCCCGGCACTGGTGGACCGCGCCAGTCGCCTCGACCATCCTCGGCAACCTGCTGGACACCTTCACCTTCTTCTTCGTGGCGTTCTGGCGTAGCGACAATCCGTTCATGGCGCAGCACTGGGTGGAAATCGCCACGGTGGACTACGGAGTGAAGCTGAGTATCAGCCTTCTGCTGTTCGTGCCGCTCTACGGCATGCTACTCAACGGCATCCTGAAGATGCTGCCGGGGCGGCCGCAGAGCAACGCTTGA,MSASSPAAWRGTLAGLIAFHIFIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA,,15687295 ; ,,77% similar to hypothetical protein YhhQ [Escherichia coli] ; ,6 predicted transmembrane helices ; 6 predicted transmembrane helices (TMHMM v.2.0) ; At least one transmembrane helix predicted by Phobius ; ,,,Membrane proteins ; ,Cytoplasmic Membrane,Class 3,,TIGR00697 ,TIGR00697 ,conserved hypothetical integral membrane protein ,subfamily ,3.60E-50 ,No Data ,Hypothetical proteins ,Conserved Hypothetical proteins ,PF02592 ,DUF165, Uncharacterized ACR, YhhQ family COG1738.. ,COG1738 , COG1738, Uncharacterized conserved protein [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0014,,15595212,Protein,16607,16335,,,hypothetical protein,,Class 4,ATGTCGAAGCAAGAGCGTTCAGTCCCGTCCTATGTCGAATACCCATACGAGCAAGCGATTCTCTACGTTCACCGGAACGCCTCCGCCAATGAGATGCTCGAATCCGTACAGGAGCGCCTCAGGGCTCTCCTCGGCCTCCTCCATGCCTTGGAAAGGATCGAAGTGCGGACAGGGCTGGGCGTTCCCATTCAGCGCGTGGCGCACATCCTGGTCACGCTCGGCGGCGATGCCCTGACGCTGCTCACGGCCGCGCACCGGGCTACCACCTCCTGA,MSKQERSVPSYVEYPYEQAILYVHRNASANEMLESVQERLRALLGLLHALERIEVRTGLGVPIQRVAHILVTLGGDALTLLTAAHRATTS,,,,,,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0015,,15595213,Protein,17217,16900,,,hypothetical protein,,Class 4,ATGATGATCGAAGGTCTGGAAAAGATGCTGGCCAAAGGCGTGGACAATGCGCTGCTGCGCTTCGGCCTGGGCAAGGGCTACCTGGACGCGGGCGACGCCGAACGCGCGGCGGAACACCTCCAGCGCTGCGTAGAGCAGGACCCGAAGTATTCCGCCGGCTGGAAGCTGCTGGGCAAGGCGCGCCAGGCTGCCGGCGATCTCGCGGGCGCCCGGCAGGCCTGGGAGCAGGGCCTGGCAACTGCCGCGACGCATGGCGACAAGCAGGCCGAAAAGGAAATGACGGTGTTCCTGCGCAAGCTCGACAGGGCGAGAACCTGA,MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCVEQDPKYSAGWKLLGKARQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDRART,,,,46% similar to putative protein [Aquifex aeolicus] ; ,,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,COG4783 , COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]. ,General function prediction only 
NC_002516,Chromosome,PA0016,,15595214,Protein,18739,17366,trkA,,potassium uptake protein TrkA,,Class 2,ATGAAAATCATCATCCTCGGTGCCGGCCAGGTCGGCGGCACACTGGCCGAGCACCTGGCCAGCGAAGCCAACGACATCACCGTGGTCGACACCGACGGCGACCGCCTGCGCGACCTCGGCGACCGCCTCGACATCCGCACCGTGCAAGGCAAGGCCTCGTTCCCCACGGTGCTGCGCCAGGCCGGCGCCGACGACGCCGACATGCTGGTGGCGGTGACCAATAGCGACGAGACCAACATGGTCGCCTGCCAGGTCGCCTACACCCTGTTCAACACCCCGACCAAGATCGCCCGCGTCCGCGAGCCGGCCTACCTGACCCGTACCGGGCTGTTCGACAACGAGGCGATCCCGGTGGACGTGCTGATCAGCCCGGAGCAGGTGGTCACCAACTACATCAAGCGCCTGATCGAACACCCCGGCGCGCTGCAAGTCATCGACTTCGCCGAGGGCAAGGCGCAGTTGGTCGGGATCAAGGCCTACTACGGCGGCCCTCTGGTAGGGCAGGAGCTGCGCCAGCTGCGCGAGCACATGCCGAACGTGGATACCCGCGTCGCCGCGATCTACCGCCGCAACCGGCCGATCATTCCCCAGGGCGACACGGTGATCGAGGCCGACGACGAAGTCTTCTTCATCGCCGCCAAGGCCCATATCCGCGCGGTAATGGGCGAGATGCGCAGGCTCGACGACAGCTACAAGCGGATCATCATCGCCGGCGGCGGCAATGTCGGCGAGCGCCTGGCCGAGGCCATCGAGAGCCGCTACCAGGTAAAGATCATCGAGCGCAGCCCGCTGCGCTGCCGGCACCTCTCGGATACCCTGGACAGCACCATCGTGCTCAACGGCAGCGCTTCCGACCGCGACCTGCTGCTGGAGGAAAACATCGGCGAGACCGACGTGTTCCTCGCCCTGACCAACGACGACGAGGCCAACATCATGTCCTCGCTGCTGGCCAAGCGGCTCGGCGCGAGCAAAGTGATGACCCTGATCAACAACCCGGCCTATGTCGACCTGGTGCAAGGCGGCGAGATCGACATCGCCATCAGCCCGCAACTGGCGACCATCGGCACCCTGCTGGCCCACGTTCGCCGCGGCGACATCGAGAGCGTACACTCGCTGCGCCGCGGCGCAGCCGAAGCGATCGAAGTGGTAGCCCATGGCGACGCCAAGTCGAGCAAGGTGATCGGTCGCTCGATCAACGAGATCAAGCTGCCGCCGGGCACCACCATCGGCGCGCTGGTGCGCGACGAGGAAGTGCTGATCGCCCATGGCGACACCCGCATCGAGAGCGGCGACCACGTGCTGCTGTTCCTGGTCGACAAGAAATACATCCGAGACGTCGAGCGACTGTTCCAGGCCGGCCTGACGTTCTTCTGA,MKIIILGAGQVGGTLAEHLASEANDITVVDTDGDRLRDLGDRLDIRTVQGKASFPTVLRQAGADDADMLVAVTNSDETNMVACQVAYTLFNTPTKIARVREPAYLTRTGLFDNEAIPVDVLISPEQVVTNYIKRLIEHPGALQVIDFAEGKAQLVGIKAYYGGPLVGQELRQLREHMPNVDTRVAAIYRRNRPIIPQGDTVIEADDEVFFIAAKAHIRAVMGEMRRLDDSYKRIIIAGGGNVGERLAEAIESRYQVKIIERSPLRCRHLSDTLDSTIVLNGSASDRDLLLEENIGETDVFLALTNDDEANIMSSLLAKRLGASKVMTLINNPAYVDLVQGGEIDIAISPQLATIGTLLAHVRRGDIESVHSLRRGAAEAIEVVAHGDAKSSKVIGRSINEIKLPPGTTIGALVRDEEVLIAHGDTRIESGDHVLLFLVDKKYIRDVERLFQAGLTFF,,7948029 ; ,b3287-b3290 (Ecoli) ; ,79% similar to TrkA protein of the constitutive K+ -transport system Trk [Escherichia coli] ; 79% similar to TrkA [Vibrio alginolyticus] ; ,,,,Transport of small molecules ; ,Cytoplasmic,Class 3,,,,,,,,,,PF02080 PF02254 ,TrkA_C, TrkA-C domain. This domain is often found next to the pfam02254 domain. The exact function of this domain is unknown. It has been suggested that it may bind an unidentified ligand. The domain is predicted to adopt an all beta structure.. TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.. ,COG0569 , TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]. ,Inorganic ion transport and metabolism 
NC_002516,Chromosome,PA0017,,15595215,Protein,20071,18767,,sun ;fmu ;,conserved hypothetical protein,,Class 4,ATGAACCCGCGTCTCGCCGCCTGCCAGGCGCTGGCCGCGGTGCTCGCCGGACGCGCCTCGCTGTCTGGCGCGTTGCCGCCGCAACTGGACAAGGTCGCCCCGCGCGATCGCGGCCTGACCCAGGAGCTGGCCTTCGGCGCTGCGCGCTGGCAACCGCGCCTGCAGGCCCTGGCCGCGCGCCTGTTGCAGAAGCCGTTCAAGGCCGCCGACACCGATATCCACGCCCTGCTGCTGATCGGCCTCTACCAGTTGCTCTACACGCGGATTCCGCCGCACGCCGCGATCGGCGAGACCGTCGGCTGCGCCGACAAGCTGAAGAAGGGCTGGGCCAAGGGCGTGCTCAACGCCGTGCTGCGCCGCGCGCAGCGCGAAGGCGAGACGCTGCTGGCCGAGGTCGACCGCGATCCCTCAGCGCGCCTGGGCCATCCGCGCTGGCTGCTGAAAGCGCTCAAGCAGGCCTGGCCGGAGCAGCTCGACGCGCTCTGCGCAGCGAACAACGCACACCCGCCGATGACCTTGCGGGTCAATCGGCGCCACGGCGAGCGCGATGCCTACCTGGCCGAACTCGCCGAAGCCGGAATCAAGGCCCGCGCCTGCGACTACAGCCGCGACGGCATCCAGCTCGCCGCGCCGCGCGACGTGCGCGAACTACCGGGCTTCGCGGAGGGTCGCGTCAGCGTCCAGGACGAAGCCGCGCAACTGGCCGCCGAGCAGCTCGAAAGCGCGCCCGGCCAGCGTGTCCTCGACGCCTGCTGTGCGCCTGGCGGCAAGACCTGCCACCTGCTGGAAACCCAGCCGGAACTGGCCGAAGTGGTCGCCGTCGACCTCGAGGAGAGCCGCCTGGTAAGGGTCCGGGAAAACCTCCAGCGGCTCGGCCTGCAAGCCAGCCTGGTCGCCGCCGACGCCAGGGCCACCGGGGAGTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTCCTCGACGCGCCGTGCTCGGCCACCGGGGTGATCCGCCGCCACCCGGACATCAAGCTGGCGCGCAAGCCGGAAGACATCGCCGCCCTGGCGCACCTGCAGGGTGAATTGCTCGACGCGCTGTGGCCTACCCTGGAAGTCGGTGGCGTACTGCTCTACGCCACCTGTTCGGTGATGCCGGCGGAAAACAGCGACAGCATCGCCGCCTTCCTCGCCCGCACGCCCGGCGCCCGCGAACTGGACCTTCCCGGCCCCTGGGGCATGAAACAGCCCCACGGCCGCCAGTTGCTGCCGCAGGTGGAGGGCCACGATGGCTTCTACTATGCCAAGCTGATCAAGATATCCGCCCGTTGA,MNPRLAACQALAAVLAGRASLSGALPPQLDKVAPRDRGLTQELAFGAARWQPRLQALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCADKLKKGWAKGVLNAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWPEQLDALCAANNAHPPMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELPGFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEESRLVRVRENLQRLGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDIKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGARELDLPGPWGMKQPHGRQLLPQVEGHDGFYYAKLIKISAR,,15687295 ; 8412700 ; 9720051 ; ,b3287-b3290 (Ecoli) ; ,63% similar to hypothetical protein Sun [Escherichia coli] ; ,BL01153: NOL1/NOP2/sun family signature ; type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 24) ; type I export signal computationally predicted by Phobius (cleavage after residue 24) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 23) ; ,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,GO:0016434 ;GO:0000154 ;,TIGR00563 ,rsmB ,sun protein ,equivalog ,3.00E-147 ,2.1.1.- ,Protein synthesis ,tRNA and rRNA base modification ,PF05175 PF01029 PF01189 ,MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.. NusB, NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.. Nol1_Nop2_Fmu, NOL1/NOP2/sun family.. ,COG0144 , Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0018,,15595216,Protein,21012,20068,fmt,,methionyl-tRNA formyltransferase,,Class 2,ATGAGCCAAGCATTGCGCATCGTCTTCGCCGGAACCCCGGAATTCGCCGCCGAGCATCTCAAGGCCCTGCTCGACACCCCACATCGGATCGTCGCCGTCTACACCCAGCCTGACCGGCCGGCCGGCCGCGGGCAGAAACTGATGCCCAGCGCGGTGAAGAGCCTGGCCCTGGAGCATGGCCTGCCGGTCATGCAGCCGCAGAGCCTGCGTAATGCCGAGGCCCAGGCGGAGCTGGCGGCCCTGCGCGCGGACCTGATGGTGGTGGTCGCCTATGGCCTGATCCTGCCCCAGGCGGTACTCGATATCCCGCGCCTGGGCTGCATCAACAGCCACGCCTCGCTGCTGCCGCGCTGGCGCGGCGCCGCGCCGATCCAGCGCGCGGTGGAAGCCGGCGACGCGGAGAGCGGCGTCACCGTGATGCAGATGGAAGCAGGGCTCGACACCGGCCCGATGCTGCTCAAGGTGAGCACGCCGATTTCCGCCGCGGACACCGGCGGCAGCCTGCACGATCGGCTCGCCGCGCTCGGCCCGAAAGCGGTGATCGAAGCCATCGCCGGCCTGGCCGCCGGCACCCTGCATGGCGAGATCCAGGACGACGCCCTGGCCACCTACGCGCACAAGCTGAACAAGGACGAGGCACGCCTCGACTGGAGCCGTCCGGCCGTCGAACTGGAGCGCCAGGTCCGCGCCTTCACCCCCTGGCCGGTCTGCCACACCAGCCTCGCCGATGCGCCGCTGAAAGTCCTCGGCGCCAGCCTGGGGCAGGGCAGCGGGGCGCCCGGAACCATCCTCGAGGCCAGCCGCGACGGCCTGCTGGTCGCCTGCGGCGAAGGCGCCCTGCGCCTGACCCGCCTGCAATTGCCTGGCGGCAAGCCACTGGCCTTCGCCGACCTCTACAACAGCCGCCGCGAGCAATTCGCCGCCGGCCAGGTGCTCGGCCAATGA,MSQALRIVFAGTPEFAAEHLKALLDTPHRIVAVYTQPDRPAGRGQKLMPSAVKSLALEHGLPVMQPQSLRNAEAQAELAALRADLMVVVAYGLILPQAVLDIPRLGCINSHASLLPRWRGAAPIQRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPISAADTGGSLHDRLAALGPKAVIEAIAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWSRPAVELERQVRAFTPWPVCHTSLADAPLKVLGASLGQGSGAPGTILEASRDGLLVACGEGALRLTRLQLPGGKPLAFADLYNSRREQFAAGQVLGQ,,1624424 ; 8432722 ; 8887566 ; ,b3287-b3290 (Ecoli) ; ,74% similar to methionyl-tRNA formyltransferase [Escherichia coli] ; ,,One carbon pool by folate ; Methionine metabolism ; Aminoacyl-tRNA biosynthesis ; ,2.1.2.9 ;,Amino acid biosynthesis and metabolism ; Translation, post-translational modification, degradation ; ,Unknown,Class 3,GO:0004479 ;GO:0006431 ;,TIGR00460 ,fmt ,methionyl-tRNA formyltransferase ,equivalog ,8.70E-126 ,2.1.2.9 ,Protein synthesis ,tRNA aminoacylation ,PF02911 PF00551 ,Formyl_trans_C, Formyl transferase, C-terminal domain.. Formyl_trans_N, Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.. ,COG0223 , Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0019,,15595217,Protein,21573,21067,def,,polypeptide deformylase,formylmethionine deformylase ;,Class 2,ATGGCCATCCTGAACATTCTCGAATTCCCCGATCCGCGCCTGCGGACCATCGCCAAACCGGTGGAGGTGGTCGACGACGCGGTGCGCCAGCTGATCGACGACATGTTCGAAACCATGTACGAAGCCCCGGGCATCGGCCTCGCCGCGACCCAGGTGAACGTGCACAAGCGCATCGTGGTCATGGACCTCAGCGAAGACAAGTCCGAGCCGAGGGTATTCATCAACCCCGAGTTCGAACCGCTGACCGAGGATATGGACCAGTACCAGGAAGGCTGCCTGTCGGTACCCGGCTTCTACGAGAACGTGGACCGACCGCAGAAGGTCCGGATCAAGGCCCTCGACCGCGATGGCAACCCCTTCGAGGAAGTCGCCGAAGGCCTGCTGGCGGTATGCATCCAGCACGAATGCGACCACCTCAACGGCAAGCTGTTCGTCGACTACCTGTCCACCCTCAAGCGCGACCGCATCCGCAAGAAGCTGGAAAAGCAGCATCGACAGCAGGCGTGA,MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA,,8845003 ; ,,75% similar to E. coli polypeptide deformylase. ; ,,,,Translation, post-translational modification, degradation ; ,Cytoplasmic,Class 3,GO:0006464 ;GO:0042586 ;,TIGR00079 ,pept_deformyl ,peptide deformylase ,equivalog ,2.30E-74 ,3.5.1.88 ,Protein fate ,Protein modification and repair ,PF01327 ,Pep_deformylase, Polypeptide deformylase.. ,COG0242 , Def, N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0020,,15595218,Protein,21712,22737,,,hypothetical protein,,Class 4,ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCATCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGCCGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTCGATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCCGATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGAAGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCCCGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGAAGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCACTGACCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCCGGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGTCACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAAACGGTGCGCGACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTGAGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA,MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYVDGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYARGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMPGEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKLSYALVLMASRPLSVTDRVQNP,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 19) ; type I export signal computationally predicted by Phobius (cleavage after residue 19) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 19) ; Export across inner membrane confirmed by PhoA fusion screen ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,COG1652 ,XkdP, Uncharacterized protein containing LysM domain [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0021,,15595219,Protein,22872,23960,,smf ;,conserved hypothetical protein,,Class 4,ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCTGCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTGCCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCTGCGCAGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGTCGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCACCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCCGCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCGCCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGCCGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGCGGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGGCGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCGGCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCCTACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGACGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA,MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGLRRHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGAAHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAPYTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG,,,,59% similar to Smf protein [Escherichia coli] ; ,,,,Membrane proteins ; Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,TIGR00732 ,dprA ,DNA protecting protein DprA ,equivalog ,7.30E-95 ,No Data ,Cellular processes ,DNA transformation ,PF02481 ,SMF, SMF family. The SMF family (DNA processing chain A, dprA) are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation.. ,COG0758 ,Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]. ,DNA replication, recombination, and repair / Intracellular trafficking and secretion 
NC_002516,Chromosome,PA0022,,15595220,Protein,24001,24558,,yrdC ;,conserved hypothetical protein,,Class 4,ATGATCAGCAGCTTTCGTGCGCAATGCGCCGCCCGGGTCGTCCGCGAGGGCGGCGTGATCGCCTATCCCACCGAGGCGGTATGGGGGCTCGGCTGCGACCCGTGGAACGAGGATGCGGTGTATCGCCTGCTGGCGCTGAAGGCGCGGCCGGTGGAAAAGGGCCTGATCGTGGTGGCGGCGAACATCCACCAGCTCGACTTCCTTCTCGAAGACCTGCCGGACGTCTGGCTGGACCGCCTGGCCGGTACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCACCAGGAGCGCCTGCCGGAGTGGGTCACCGGCGTCCACGACAGCGTCGCCGTGCGGGTCACCGACCATCCCCTGGTACAGGAACTGTGCCATCTCACCGGTCCGCTGATCTCCACCTCGGCCAATCCGGCCGGGCGCCCGGCGGCGCGCACGCGGCTGCGGGTGGAGCAATACTTCCACGACGAGCTGGACGCTATCCTCGGCGGCGCCCTTGGCGGGCGCCGCAACCCCAGCCTGATCCGCGACCTGGTGACTGGACAGGTCATCCGCCCGGCCTGA,MISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLLALKARPVEKGLIVVAANIHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWVTGVHDSVAVRVTDHPLVQELCHLTGPLISTSANPAGRPAARTRLRVEQYFHDELDAILGGALGGRRNPSLIRDLVTGQVIRPA,,,,63% similar to E. coli yrdC hypothetical gene product. ; ,PF01300: SUA5/yciO/yrdC family ; ,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,,TIGR00057 ,TIGR00057 ,Sua5/YciO/YrdC/YwlC family protein ,hypoth_equivalog ,3.60E-14 ,No Data ,Unknown function ,General ,PF01300 ,Sua5_yciO_yrdC, yrdC domain. This domain has been shown to preferentially bind to dsRNA. The domain is found in SUA5 as well as HypF and YrdC.. ,COG0009 ,SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0023,,15595221,Protein,25545,24568,qor,,quinone oxidoreductase,NADPH:quinone reductase ;,Class 2,ATGGCCAAGCGCATCCAGTTCGCTGCCTACGGCGGCCCCGAAGTCCTCGAATACCGCGACTACCAACCCGCCGAGCCGGGCCCCCGGGAAGTCCGCGTGCGCAATCGCGCCATTGGCCTGAACTTCATCGACACCTACTACCGCAGCGGCCTCTATCCGGCCCCCGGCTTACCCTCGGGACTGGGTAGCGAAGGTGCCGGCGAGGTCGAGGCGGTGGGCAGCGAAGTGACCCGTTTCAAGGTCGGCGACCGCGTCGCCTACGCCACCGGCCCCCTGGGCGCCTACAGCGAACTGCATGTGCTGGCGGAGGAGAAGCTGGTCCACCTGCCCGACGGCATCGACTTCGAACAGGCCGCCGCGGTGATGCTCAAGGGGCTCACCACCCAATACCTGCTGCGCCAGACCTACGAACTGCGGGGCGGCGAAACCATTCTCTTCCATGCCGCCGCGGGCGGCGTGGGCCTGTTCGCCTGCCAATGGGCCAAGGCCCTTGGAGTGCAACTGATCGGCACCGTCAGCTCGCCGGAAAAGGCGCGCCTGGCCAGGCAGCACGGTGCCTGGGAGACCATCGACTACAGCCACGAGAACGTGGCGCGGCGGGTGCTCGAACTGACCGACGGGAAGAAGTGCCCGGTGGTCTACGACTCGGTGGGCAAGGATACCTGGGAAACCTCGCTGGACTGCGTGGCGCCGCGCGGCTTGCTGGTCAGCTTCGGCAACGCCTCGGGGCCGGTGACCGGGGTCAACCTCGGCATCCTCTCGCAGAAGGGTTCGCTGTACGTGACCCGGCCGACCCTGGGCAGCTACGCCGATACCCCGGAAAAACTCCAGGCGATGGCCGACGAGCTGTTCGGCCTGATCGAGCGCGGCGACATCCGCATCGAGATCAACCAGCGCTTCGCCCTGGCCGAAGCAGCCAGGGCGCATACCGAACTGGCCGCACGGCGAACCACCGGCTCGACCGTACTGTTGCCCTGA,MAKRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFIDTYYRSGLYPAPGLPSGLGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLAEEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQWAKALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVGKDTWETSLDCVAPRGLLVSFGNASGPVTGVNLGILSQKGSLYVTRPTLGSYADTPEKLQAMADELFGLIERGDIRIEINQRFALAEAARAHTELAARRTTGSTVLLP,,7602590 ; ,,72% similar to quinone oxidoreductase [E. coli] ; ,PS01162: Quinone oxidoreductase / zeta-crystallin signature ; ,,1.6.5.5 ;,Energy metabolism ; ,Unknown,Class 3,,TIGR01751 ,crot-CoA-red ,crotonyl-CoA reductase ,No Data ,9.90E-09 ,No Data ,No Data ,No Data ,PF08240 PF00107 ,ADH_N, Alcohol dehydrogenase GroES-like domain. This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure.. ADH_zinc_N, Zinc-binding dehydrogenase.. ,COG0604 ,Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]. ,Energy production and conversion / General function prediction only 
NC_002516,Chromosome,PA0024,,15595222,Protein,25736,26653,hemF,,coproporphyrinogen III oxidase, aerobic,,Class 2,GTGACCGACCGTATCGCCGCTGTCAAAACCTACCTGCTCGACCTGCAAGACCGCATCTGCGCCGCCCTCGAGGCGGAGGACGGCAAGGCCCGCTTCGCCGAGGACGCCTGGGAGCGTCCGGCCGGTGGCGGCGGACGGACGCGGGTAATCGGCGACGGCGCATTGATCGAGAAGGGCGGGGTGAATTTTTCCCACGTCTTCGGCGATAGCCTGCCGCCCTCGGCCAGCGCCCATCGGCCGGAACTGGCCGGGCGCGGTTTCCAGGCGCTCGGCGTGTCGCTGGTGATCCATCCGGAAAACCCCCACGTGCCGACGTCCCATGCCAACGTGCGTTTCTTCTGCGCCGAGAAGGAAGGCGAGGAGCCGGTCTGGTGGTTCGGCGGCGGCTTCGATCTGACCCCCTACTACGCCCACGAGGAAGACTGCGTGCATTGGCACCGGGTCGCTCGCGACGCCTGCGCGCCGTTCGGCGCGGACGTCTACCCGCGCTACAAGGAATGGTGCGACCGCTACTTCCACCTCAAGCACCGCAACGAGCCGCGCGGCATCGGCGGCCTGTTCTTCGACGACCTCAACCAGTGGGACTTCGACACCTGCTTCGCCTTCATCCGCGCCATCGGCGATGCCTATATCGACGCCTACCTGCCGATCGTCCAGCGCCGCAAGCACACGCCGTTCGATGAACGGCAGCGAGAGTTCCAGGCCTATCGTCGCGGTCGCTATGTGGAGTTCAACCTGGTCTTCGATCGTGGCACCCTGTTCGGCCTGCAGTCCGGCGGCCGTACCGAATCGATCCTGATGTCGTTGCCGCCGCAGGTGCGCTGGGGCTATGACTGGAAACCCGAGCCGGGCAGCGAGGAAGCGCGCCTGACCGAGTATTTCCTCGCCGACCGCGATTGGCTCGCCGGCCAGCCCTGA,MTDRIAAVKTYLLDLQDRICAALEAEDGKARFAEDAWERPAGGGGRTRVIGDGALIEKGGVNFSHVFGDSLPPSASAHRPELAGRGFQALGVSLVIHPENPHVPTSHANVRFFCAEKEGEEPVWWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADVYPRYKEWCDRYFHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIVQRRKHTPFDERQREFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSLPPQVRWGYDWKPEPGSEEARLTEYFLADRDWLAGQP,,8349542 ; ,,80% similar to S. typhimurium hemF gene product. ; ,,Porphyrin and chlorophyll metabolism ; ,1.3.3.3 ;,Biosynthesis of cofactors, prosthetic groups and carriers ; ,Unknown,Class 3,,,,,,,,,,PF01218 ,Coprogen_oxidas, Coproporphyrinogen III oxidase.. ,COG0408 ,HemF, Coproporphyrinogen III oxidase [Coenzyme metabolism]. ,Coenzyme metabolism 
NC_002516,Chromosome,PA0025,,15595223,Protein,26711,27535,aroE,,shikimate dehydrogenase,,Class 2,ATGGACCGCTATTGCGTATTCGGCAACCCCATCGGCCACAGCAAGTCGCCGCTGATCCACCGCCTGTTCGCCGAGCAGACCGGCGAGGCGCTGGTCTATGACGCGCAACTGGCGCCGCTGGACGATTTCCCCGGGTTCGCCCGGCGCTTCTTCGAGCAGGGCAAGGGCGCCAATGTCACCGTGCCGTTCAAGGAAGAGGCCTATCGTCTGGTGGACGAGTTGAGCGAGCGGGCCACCCGGGCCGGGGCGGTGAACACCCTGATCCGCCTCGCCGACGGTCGCCTGCGCGGCGACAACACCGACGGCGCCGGCCTGCTGCGGGACCTGACGGCGAACGCCGGGGTCGAGCTGCGCGGCAAGCGGGTTCTCCTGCTCGGCGCCGGCGGTGCGGTGCGTGGGGTGCTCGAACCCTTCCTCGGCGAGTGCCCGGCGGAGTTGCTGATCGCCAACCGCACGGCGCGGAAGGCCGTGGACCTGGCCGAGCGGTTCGCCGACCTCGGCGCGGTGCACGGCTGCGGTTTCGCCGAGGTCGAAGGGCCTTTCGACCTGATCGTCAACGGCACCTCGGCCAGTCTTGCCGGCGACGTGCCGCCGCTGGCGCAGAGCGTGATCGAGCCCGGCCGTACCGTCTGCTACGACATGATGTATGCCAAGGAACCGACTGCCTTCAACCGCTGGGCCGCCGAACGCGGTGCGGCGCGTACCCTGGATGGCCTGGGCATGCTGGTGGAGCAGGCCGCCGAGGCATTCTTCCTCTGGCGCGGCGTGCGTCCTGCCTCGGCGCCAGTGTTGGAGACGCTGCGCCGACAGTTGGCAACTGTCTGA,MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQGKGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEGPFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV,,3277621 ; ,,64% similar to E. coli shikimate dehydrogenase. ; ,,Phenylalanine, tyrosine and tryptophan biosynthesis ; ,1.1.1.25 ;,Amino acid biosynthesis and metabolism ; ,Cytoplasmic,Class 3,GO:0004764 ;GO:0009423 ;,TIGR00507 ,aroE ,shikimate 5-dehydrogenase ,equivalog_domain ,1.50E-96 ,1.1.1.25 ,Amino acid biosynthesis ,Aromatic amino acid family ,PF08501 PF01488 ,Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain. This domain is the substrate binding domain of shikimate dehydrogenase.. Shikimate_DH, Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.. ,COG0169 ,AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]. ,Amino acid transport and metabolism 
NC_002516,Chromosome,PA0026,,15595224,Protein,27646,28632,plcB,,phospholipase C,  PlcB,,Class 1,ATGAAAACCTTCGCCCGCCTGGCCGCCGGTCTCTGCATCTGCGCCATCGCCAGCCAGGCCAACGCCTGGTCGCAACCGACCCACAAGAACATCGTCAAGGATGCCCTGGCCTTCATGAACTCCTCCTACGCCACCGAGGAGATGCGCCAGGCCTACCGGTTCTACGTGAGCGCCGCCGGCAGCGAGGCGCAGGCCGGGGAGATCCTCGGCCAGGCGGCCTTCGACGTGGACGACTTCAAGGACACCCGTCTCGGTGGCTGGTGGGTCGGCTACGAACACGCGCCGCTGTGGGGCGCGGCTTCGGGCATCGTCAACTACACCTCGTACTGGCACTTCCTCAACCTGGCCCGGGACGGCGACTCCCATGGCAACCCCCACGGCGGCTACGACTACCGCTACCACAAGGTCGACGGCGGCATCGCCGACGTCGACTGGTACGCCATGGTCTACCTCTACAACCGCGAGCTGAAGCGCGAGGACTTCGACACCACCGAGGCGCACTACCGCCAGGGCACCCGCTCGGACTGGCAGGAGCACTACGGCGACTTCCAGACCGCCGCCTTCCAGCCGATCGATAACCTCGCCACCTACTGGTTCGAGCAGTTCCGCGCCGCGCCTTCGCTGCAGACCATCGGCTATGCCCTGCATGCCACCGGCGACGTGGCCCAGCCGCACCATGTGTGGATCACCTCGGCCAACGGCCATTCCAGCTGGGAAGGCTGGGTCGACGACCACTACGCCAGCGAGAAGCTCAACGACCCGGCGGCGGTGGCCAACCTGGTGGGGCGCTACGACCCGAGCAAGAGCATCCGCGACCTGCTCACCCAGACCGGCCAGGTCGCCTACGCGCGCCCCGAGCCGCTCTACGACACCAGCTACGAGACGCGCCTGCGGGTGGCGAAGGAGCTGATTCCCGAGTCCATCGCCCTGACCGTCACCGTACTGACCAAGGGCGCCAACAGCTTCGATGCACCGACTGCTCTCTGA,MKTFARLAAGLCICAIASQANAWSQPTHKNIVKDALAFMNSSYATEEMRQAYRFYVSAAGSEAQAGEILGQAAFDVDDFKDTRLGGWWVGYEHAPLWGAASGIVNYTSYWHFLNLARDGDSHGNPHGGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDFDTTEAHYRQGTRSDWQEHYGDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHATGDVAQPHHVWITSANGHSSWEGWVDDHYASEKLNDPAAVANLVGRYDPSKSIRDLLTQTGQVAYARPEPLYDTSYETRLRVAKELIPESIALTVTVLTKGANSFDAPTAL,PlcB is required for directed twitching motility up a gradient of phosphatidylcholine (PC), or phosphatidylethanolamine (PE) with specific type of fatty acid residues. PlcB can hyrolyse both PC and PE, and secreted via the Sec pathway. Proteins encoded by PA0027 & PA0028 are required for the proper folding (PA0027) of PlcB and to chaperone (PA0028) it through the inner and outer membrane. ;,15306013 ; 15687295 ; ,PA0026, PA0027 & PA0028 constitute an operon ; ,,3 His residues are involved in coordinating three zinc ions in the active site. The region encompassing the active site shares limited, but significant similarity to the zinc dependent PlCs of Gram-positive bacteria, including Bacillus cereus, Listeria monocytogenes (PlcB), Clostridium perfringens (alpha toxin) ; type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 22) ; type I export signal computationally predicted by Phobius (cleavage after residue 22) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 22) ; ,,,Hypothetical, unclassified, unknown ; ,Extracellular,Class 1,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0027,,15595225,Protein,28613,29899,,,hypothetical protein,,Class 4,ATGCACCGACTGCTCTCTGATCGCGCCCGGGGCTGGCGTCGCGCACTGTGCGGGATCGTCCTCGGGCTGCTGGCGTGGAGCGCCCATGGCGTCCCCGCCAAGGCGCCGCAGGATCTGCGGATCGACGGCGAGGTGCTGCCGGGGAGAAGCATCGACTTGCTCGAGCAGGCCCTGTCGCGGGTCAAGTTCAACACCGACCCGCAGCAGTTGCGCCGTGGCCTGGTGGAAAACCGCCTGCTGGCGCGCGCGGTGGAAGACCAGCTCACCGCGCAGAGCCGCGCCGATCTCGACGCCAGCGTGGAGATCGAGGCCGGCAACCTGCTCGAACAGGTATACGGCAGGCGCTACCGCGAGGACCTCGGGCCATACCTGCGCCAGCCCCGGGCCCTGAGCGCGGAGCGTTTGCGCGAGGTGCTGGCGCCGAGGAGCCGCGGCCTGGTGGAAAACAGCCTGCTGCTGGACGAGACGCAGCGCCGCGAGGCGGCCGGGGTCGAGCTGATCGGCTGGCAGTTTCCCGGCCAGCCGGCACAGGTCCTCGACCTGCTATCGCTGTACGAAGGCGACAACGTCCAGGGCCAGGTGGAATTGCAACAGGGCAACCTCGCTTACCTGGCGCGCCAGGTCCAGACCCGCATCCGCCGCGACTACCTCTGGTACCGCCTGGCCCGGGACGGCTTCGGCCCGGCAGAGCGGCAGGGCGTGAGGACCCTGGTGCGGGACAAGCTGGTGCGCCATCGCTATCTGCACCAGATCGGCCTCTACAGTGATTTCCACCATGAGTCCGATGCGCTGCGGGAACTCGCCGGCAAGGTCAGCGACAAGGACGCCGAGGCCTACTATCGGCGCAACCTGGAGCGTTACCGCAACGTCGCGCAGGTGCAGGCGGCGCATATCCGCCTGGCCGACCAGGCGAGCGCGGACAAGGTCTACGCCGAGTTGCGCGGCGGCCTGGCCTTCGACGAGGCGGTACGCCGCTATTCCCTGGCCGACGACAGGGACCGCGACCCGCCCGGCGACCTAGGCCTGATACGGCCCCAGGACGGCCGGCTCGACCTGCTGCGCAAGACTGCGCTGATCCAGAAGGCCGATACGGTTTCCCAGCCGATGCGCATCGACGGCGCGTTCGAGATCGTCCGGGTGCGTAGCCGCGAGGATCGCCAGTTGCCCCTCGACGACCGCAGCGTGCGCTTCGAGGTGAACCAGGCGGTGGCGCGCGAGCAACTGGCAGCGCAGTTCGAGACGCGCCTGCGCAACCTGCTGGCCGGCGCCAGGGTGGAAGGCCTGTGA,MHRLLSDRARGWRRALCGIVLGLLAWSAHGVPAKAPQDLRIDGEVLPGRSIDLLEQALSRVKFNTDPQQLRRGLVENRLLARAVEDQLTAQSRADLDASVEIEAGNLLEQVYGRRYREDLGPYLRQPRALSAERLREVLAPRSRGLVENSLLLDETQRREAAGVELIGWQFPGQPAQVLDLLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDYLWYRLARDGFGPAERQGVRTLVRDKLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVEGL,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 30) ; type I export signal computationally predicted by Phobius (cleavage after residue 30) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 30) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown (This protein may have multiple localization sites),Class 3,,,,,,,,,,,,COG0760 ,SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]. ,Posttranslational modification, protein turnover, chaperones 
NC_002516,Chromosome,PA0028,,15595226,Protein,29896,30498,,,hypothetical protein,,Class 4,GTGAAGCGCTGGCTCGGCGTTGCCCTCGGCTGCAGCGGGCTGGCGATCGCCCTGGCCTGCGCCGGCGTGTTGCTGGCGCCTGCCGATATGGCCGCTTCCTCGTCTTCTCCGTCGCCAGCCAGGACGGTTGCGGCACTGCCCGCGGTCGACGACCGTCCGCCGCCGCCGGCGCCGGTGCGATCGCAAGCGGCAGCACCGGCGTACGAGGCGGAGCCGCCGGTGGCGGAACTGGATCGCGAGCAGGCGATCCAGTTCATGCAGATGCTGCGCGACGAGGGCGACCCGCGCAGCCCGCCGCTCGGCGGCCTGCAACCACGCCAGGGCGCGACGGCGCAGGAGCTGGCCGATCCGAAGCAGTACCAGGCCTTCGAGGAACGACAGACCCGCGAACTGGTACAGGCCTACACCAGCGGCGTACAGCAGATACCGGAAATCCGCGCGCGGATCGAGGCGGCCGAACAGGGTGGCGAGCGCAGCGCCGAGGAAATCGACGAGGCTCGCGCCGCCCTTGGACAGTTGGAGATGATGCGCGACAAGCTGCAGCGGGAATCGCCGCAACTGCTGCCCGGCGACAGCGCACCGACATCGCCGGCGGCGCCCTGA,MKRWLGVALGCSGLAIALACAGVLLAPADMAASSSSPSPARTVAALPAVDDRPPPPAPVRSQAAAPAYEAEPPVAELDREQAIQFMQMLRDEGDPRSPPLGGLQPRQGATAQELADPKQYQAFEERQTRELVQAYTSGVQQIPEIRARIEAAEQGGERSAEEIDEARAALGQLEMMRDKLQRESPQLLPGDSAPTSPAAP,,15687295 ; ,,,Type II (lipoprotein) export signal predicted by LipoP (cleavage after residue 19) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0029,,15595227,Protein,32055,30502,,,probable sulfate transporter,,Class 3,ATGTGGACGCGCCTGCTGCCGTTCCTCGCCTGGCTACCGGGGCTGCACCGGGGCATGCTCGGGCGCGAGGCCTGGGTCGGCCTGAATGGCGCAATCCTGGCACTGCCGCAATCGATGGCCTATGCGCTGATCGCCGGCCTGCCAGCGGAGTACGGCCTGTACGCGGCGATGCTGCCAGTGGCGATCGCCTGCCTGTGGGGCTCGTCGCGCTACCTGGTGAGCGGTCCCACCGCGGCGATCTCGGTGCTGCTGTTCAGTTCGGTGGCCCCGCTGGCGCCGCTGGGCAGCCCGCAATACGTCCAGGCCGTGCTGCTGCTGACCTTTCTCGCCGGCGCCTTCCAGTGGCTGCTCGGCGTCCTGCGCGTCGGGTCGCTGGTCAATTTCGTCTCGCATTCGGTGATGCTCGGCTTCACCCTTGGCGCGGCGCTGCTGATCGTCCTCGGCCAACTGCCCTATCTTCTCGGCCTGGCCGCGAGCGGGGAGGGCGCAGCGCCGGGAAACGGCTGGCGGCTGCTGGCGCGGTTCGCCGAGTTCGATGGCCCATCGCTGCTGGTGGGCGGCTTCAGCTTCGCGCTCAGCCTGCTGGTCAGGCGCCTGCGACCGCGCTGGCCGGCCCTGCTGCTTGGCTTGCTGGGCGGTGCCACGCTGGTCTGGGCGCTACCCGGGACCTTCGCCTCGGTAGCCCATGTGCAGGCCTTATCGAGCGCACTGCCGGGCTGGAGTCCGCTGGTCTTCGATTCCCGATCGATCCTCGACCTGCTACCTGCGGCGGTGGCCTGCGGCATGCTCGGGCTGGTCACCAGCCTATCGATCGCCCGCGCCCTGGCCGCGCGCCAGGGAGACGCGTTCGATGCCAACCAGGAGGTCCGCGCCCAGGGCCTGTCGAACCTGCTCGGGCCTTGGCTGTCGGCGAGCCTGTCGGCGGGCTCCTTCACCCGCTCCGGGCTGAATCTGGAAGCCGGTGCGCGCTCCCCGCTGGCGGGTGCGTTTTCGGCGCTCTGGGTGGCACTGCTGGCCGTGCTCGGTGCGCGCCTGATCGAGCATGTGCCGTTGCCGGCGATGGCCGCAGGCATCCTGCTGATCGCCTGGGGCCTGATCGACCGCCCAGCGCTCCGCGCGCTCTACCGCAGCGGCCGCGCCGAATGCCTGGTGGCCGGCCTAACCGCCCTGGCCACGCTGCTGTTGCCGCTGCAGAACGCCATCTACGCGGGAGTGCTGGCGTCGCTGGTCTTCTACCTGCGGCGCACCTCGACACCACGCGTACTGCGCCAGCGCAACGACGAGGAAGAAGTGCTGCGCATCGAAGGCTCGATCTTCTTCGGCGCCTGCGACTACCTGCAACGCCTCATGCGCCAATGCGACAGGCCACGGCTGGTGCTGGACGCCCGCCAGGTGAACTTCATCGACTTCGCCGGCGCAGTGCTGTTGCAGCAGGAAGCCCGCCGCCTGCACGCCGAGGGCCGCCGCCTGGTATTGCGCCACGCCCGCCCGCAGGTCCGCGAAGCGCTGGGCCGGCAGGCCGACGAAGGCTGCCGCCTGCACTACGAAGGCTGA,MWTRLLPFLAWLPGLHRGMLGREAWVGLNGAILALPQSMAYALIAGLPAEYGLYAAMLPVAIACLWGSSRYLVSGPTAAISVLLFSSVAPLAPLGSPQYVQAVLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPYLLGLAASGEGAAPGNGWRLLARFAEFDGPSLLVGGFSFALSLLVRRLRPRWPALLLGLLGGATLVWALPGTFASVAHVQALSSALPGWSPLVFDSRSILDLLPAAVACGMLGLVTSLSIARALAARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGLNLEAGARSPLAGAFSALWVALLAVLGARLIEHVPLPAMAAGILLIAWGLIDRPALRALYRSGRAECLVAGLTALATLLLPLQNAIYAGVLASLVFYLRRTSTPRVLRQRNDEEEVLRIEGSIFFGACDYLQRLMRQCDRPRLVLDARQVNFIDFAGAVLLQQEARRLHAEGRRLVLRHARPQVREALGRQADEGCRLHYEG,,15687295 ; ,,48% similar to putative high affinity sulfate transporter [Aquifex aeolicus] ; ,10 predicted transmembrane helices ; PS01130: Sulfate transporters signature ; 11 predicted transmembrane helices (TMHMM v.2.0) ; Export across inner membrane confirmed by PhoA fusion screen ; ,,,Membrane proteins ; Transport of small molecules ; ,Cytoplasmic Membrane,Class 3,GO:0016020 ;GO:0008272 ;GO:0015116 ;,TIGR00815 ,sulP ,sulfate permease ,subfamily ,3.20E-83 ,No Data ,Transport and binding proteins ,Anions ,PF01740 PF00916 ,STAS, STAS domain. The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.. Sulfate_transp, Sulfate transporter family. Mutations in human diastrophic dysplasia protein lead to several diseases.. ,COG0659 ,SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]. ,Inorganic ion transport and metabolism 
NC_002516,Chromosome,PA0030,,15595228,Protein,32983,32060,,,hypothetical protein,,Class 4,ATGAACCGGCTTCCCACCTGCCTGCTGGCCGCAACCCTGTTCCTGGGCAGCGCCTCGCTATACGCCGAAGACCCCGCCTGTGCCCGCGTCAGGCTGGCCGATCCAGGCTGGAGCGATATCGCGGTGACCAACGCCACCGCCGCGTTTCTCCTGGAAAGCCTCGGCTACCAGGTGAAGATCGATACCCTGTCGGTGCCGATCATCTATGGCGGCCTGCGCGACGGCCAGGTGGACGCCTTCCTCGGCGGCTGGATGCCCGCGCACCAGGACTATCACGACAAGTTCGTCGCCAGCGGCCAGGTCGAACGCCTCGGTCGCAACCTCGACGGCACCCGCTTCACCCTGGCGGTGCCGCGCTACGTCTGGGACGCCGGCGTACACCGCTTCGAGGACCTCGCCGCGCAAGGGCAACGCTTCAACCGCAAGCTGTACGGGATCGGCTCCGGCGCGCCGGCCAATCAGTCGATCCAGAAGATGATCGACGCCAACCAGTTCGGCCTCGGCGACTGGAAGCTGGTGGAGTCCAGCGAGCAGGCGATGCTCGCCGAACTCGGCCGGGCCGAGAAGCGCCAGCGCTGGCTGGTGTTCCTCGGCTGGACGCCGCACCCGATGAACATCCGCCATGACCTGCGCTACCTGGAAGGCGGCGAGCAGTACTTCGGCGACCGCGGCCAGGTCTACACCCTGGCACGCAAGGGCTACGCCGCGCAGTGCCCGAACCCGGCGCGGCTGCTGGCCAACCTGCGCTTCGACCTGGACATGGAGAACCGCCTGATGAGCGACGCGCTGGAAGGCACGGCGACTCCGGCCTCGGCGACCCGCGCCTGGCTCAAGGCCAACCCGCGGGTGCTCGAGGCCTGGCTGCAAGGGGTGACCAGCCGCGACGGCGGCGACGCCCTGGCCGCGGTTCGCGGCCAGCCATAG,MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTNATAAFLLESLGYQVKIDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFVASGQVERLGRNLDGTRFTLAVPRYVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMIDANQFGLGDWKLVESSEQAMLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQYFGDRGQVYTLARKGYAAQCPNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPRVLEAWLQGVTSRDGGDALAAVRGQP,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 22) ; type I export signal computationally predicted by Phobius (cleavage after residue 22) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 22) ; ,,,Transport of small molecules ; Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF04069 ,OpuAC, Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).. ,COG2113 ,ProX, ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]. ,Amino acid transport and metabolism 
NC_002516,Chromosome,PA0031,,15595229,Protein,34511,33000,betC,,choline sulfatase,,Class 2,ATGAAGACCTCGCCGAACATCCTGTTCATCATGGCCGACCAGATGGCCGCGCCGCTGCTGCCGCTTCACGATCCGCGCTCGGTGCTGCGCATGCCTCACCTCTCGCGCCTCGCCGAACGGGCCGTGGTGTTCGACTCGGCATACTGCAACAGCCCGCTCTGCGCGCCGTCGCGCTTCACCCTGGTCAGCGGTCGCTTACCTACCCGCATCGGCGCCTGGGACAACGCTGCCGACTTCGCCGCCGATACCCCCACCTACGCCCACTACCTGCGCAACCTCGGCTATCGCACGGCGCTGTCGGGCAAGATGCACTTCTGCGGTCCCGACCAGTTGCACGGCTACGAGGAACGCCTGACCAGCGACATCTATCCGGCGGACTATGGCTGGGCGGTGAACTGGGACGAGCCGGAGGTGCGCCCGAGCTGGTACCACAACATGTCCTCGGTTTTGCAGGCCGGTCCCTGCGTGCGCACCAACCAGCTGGACTTCGACGAGGAGGTGGTGTTCAAGGCCCGCCAGTACCTCTACGACCATGTTCGCCAGCACGCCGGCCAGCCATTCTGCCTGACCGTGTCGATGACCCATCCGCACGACCCCTACAGCATCCCGGCGAGCTACTGGAATCTCTACCGCGACGAGGACATCCCGCTGCCGCGCCAGCGCTTCGCCCAGGAGGAGCAGGACCCTCATTCGCAACGCCTGCTGAAGGTCATCGACCTGTGGGACAAGCCGTTGCCCGAGGAGCGCATCCGCGCCGCCCGGCGTGCCTACTTCGGCGCCTGCAGCTACGTCGACGCGCAGATCGGTGCGCTGCTGGCGACCCTGGAGAAATGCGGGCTGGCCGACGACACCATCGTGGTGTTCTCCGGCGACCATGGCGACATGCTCGGCGAGCGCGGCCTCTGGTACAAGATGCACTGGTTCGAGATGGCCGCGCGCGTGCCGCTGCTGGTCCATGCGCCGGCGCGCTTCGCGCCGCGCCGCATCGGCGCTTCGGTATCCACCGTGGACCTGCTGCCGACCCTGGTGGAGCTGGCCGGCGGCCAGGTCGATCCACGCCTGCCGCTGGAAGGCCGCTCGCTGCTGCCGCACCTGCGCGACGGCAGCGGGCATGACGAGGTGATCGGCGAATACACCGCCGAGGGCACCCTCAGCCCGCTGATGATGATCCGCCGCGGCGACTACAAGTTCATCTACTCCGAGCAGGACCCCTGCCTGCTCTACGACCTGCGCAACGATCCGCAGGAACGCGAGAACCTCGCCGCCAGTCCGGCCCACCGCGGAACGTTCGAGGCGTTCCTCGACGAGGCCCGGCGACGCTGGGACATCCCCGCGATCACCCGCGCCGTACTCGACAGCCAGCGCCGCCGACGCCTGGTGGCCGCCGCGCTGGCGCGAGGACGGCTGGCCAGCTGGGACCACCAGCCGTGGGTCGATGCCAGCCAGCAGTACATGCGCAACCATATCGACCTGGACGATCTCGAGCGCCGCGCGCGCTTCCCGCAACCCTGA,MKTSPNILFIMADQMAAPLLPLHDPRSVLRMPHLSRLAERAVVFDSAYCNSPLCAPSRFTLVSGRLPTRIGAWDNAADFAADTPTYAHYLRNLGYRTALSGKMHFCGPDQLHGYEERLTSDIYPADYGWAVNWDEPEVRPSWYHNMSSVLQAGPCVRTNQLDFDEEVVFKARQYLYDHVRQHAGQPFCLTVSMTHPHDPYSIPASYWNLYRDEDIPLPRQRFAQEEQDPHSQRLLKVIDLWDKPLPEERIRAARRAYFGACSYVDAQIGALLATLEKCGLADDTIVVFSGDHGDMLGERGLWYKMHWFEMAARVPLLVHAPARFAPRRIGASVSTVDLLPTLVELAGGQVDPRLPLEGRSLLPHLRDGSGHDEVIGEYTAEGTLSPLMMIRRGDYKFIYSEQDPCLLYDLRNDPQERENLAASPAHRGTFEAFLDEARRRWDIPAITRAVLDSQRRRRLVAAALARGRLASWDHQPWVDASQQYMRNHIDLDDLERRARFPQP,,9736747 ; ,,62% similar to choline sulfatase [Sinorhizobium meliloti] ; ,PS00523: Sulfatases signature 1 ; ,,,Adaptation, Protection ; ,Cytoplasmic,Class 3,,,,,,,,,,PF00884 ,Sulfatase, Sulfatase.. ,COG3119 ,AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]. ,Inorganic ion transport and metabolism 
NC_002516,Chromosome,PA0032,,15595230,Protein,34624,35538,,,probable transcriptional regulator,,Class 3,ATGGGAGAACGCCTCATGCCGCTGTCCCTCGACCTGCTCCGGGTATTCGAGTCCGCCGCCCGCCAACTCAGCTTCACCGCTGCCGCCGAGGAACTGGGGACCACCCAGCCTGCGGTCAGCCAGCAGATCAAACGCCTGGAGAAAGAGCTGGCGACCCCTCTGTTCCAGCGCGTTCATCGAGGCATCGTGCTCACCGACGCCGGCCAGCTTCTGCTCCGCCACGTGGCCGCCGGCCTCGAGACGATCGATGCCGGCATCGCCGCGCTGGGCGCGCGCCAGCGCCACGAGGTGCTCCAGGTGGCCACCGACTACGCCTTCGCTGCCTACTGGCTGATGCCGCGCCTTCCGCGCTTCCATCAGGCCCATCCGCACCTGGACGTGAGCCTGGTGACCAGCGAGCGCGGCCTGGCCGGCCAGCGCGGCGATATCGACGTGGCGATCCTGTTCGGCGACGGTCGTTCCAAGCACGGCGAAGCGCACCGGCTGTTTCGCGAGGAGGTGTTCCCGGTCTGTAGCCCGCGGCTGGTCGAGGGATTGCAGTTGCCGCTGGCCAAGGCGCACCTGGCGCGCCTGCCGATGCTGCATCTGAAGCCGGCGCAGCACGCCCGCTGGTTCGACTGGCCGGCGTTGTTCGAAGCGTTGGCCATCGATCGGCAGCCGATTCCGGCGGTGCTCAGCTTCGACAACTACACCTTGCTGATCCAGGCGGCCATCGCCGGCCAGGGCGTGGCCATCGGCTGGCGCCACCTGGTCGACGGCCTGCTCGAACAGGGGCTGCTTTGCCGGCCCATTGGCGAGAGCTGCCTGTCGCGATACGGGTACTATGCGGTATTGCCGGAGCGCAAGCGGCGCCAGCGGCTGGTCGACGGTTTCGTCGACTGGCTACAGGCCGAGTTGCAGGCCGGCGGCGCTTGA,MGERLMPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLTDAGQLLLRHVAAGLETIDAGIAALGARQRHEVLQVATDYAFAAYWLMPRLPRFHQAHPHLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHGEAHRLFREEVFPVCSPRLVEGLQLPLAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQGVAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQAGGA,,,,49% similar to glycine cleavage system transcriptional activator protein GcvA [Escherichia coli] ; ,PS00044: Bacterial regulatory proteins, lysR family signature ; ,,,Transcriptional regulators ; ,Cytoplasmic,Class 3,,TIGR02036 ,dsdC ,D-serine deaminase transcriptional activator ,equivalog ,4.70E-19 ,No Data ,Regulatory functions ,DNA interactions ,PF00126 PF03466 ,HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.. LysR_substrate, LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.. ,COG0583 ,LysR, Transcriptional regulator [Transcription]. ,Transcription 
NC_002516,Chromosome,PA0033,,15595231,Protein,36270,35905,,,hypothetical protein,,Class 4,ATGCGAACGTTCGACCTGACCGCCGCCCTGGGCGACCGCGCCAACCAACCGGAGATCAGCCGCCTGCTCGTCGCGCAGCTGATGACCAGCAACAACGAAGACACCCGCAAGCTGCGGCGCGCCCAGGAGCGCGAGCAGACCCAGGAACTCAACGAGCTGGCGCACCGCCTGGCGGGCATGGCCTCGCTGATCCACGCCCACGCCGTGGAACGCGCCTGCCACCAACTGGAGATCGCCTGCGGCGAAAGCTCCGTGCGCAAGCTCGCCGATGCCGTCGACGACCTGGTGACGGCACTGGGCGAGCTGCAATGCGAACTGCACGACTGGATGACGATGACCGCGCCTCAAGGCACGGCGAAGTCATAG,MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQEREQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGELQCELHDWMTMTAPQGTAKS,,,,,,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,,,,,,,,,,,,COG2198 ,ArcB, FOG: HPt domain [Signal transduction mechanisms]. ,Signal transduction mechanisms 
NC_002516,Chromosome,PA0034,,15595232,Protein,36901,36278,,,probable two-component response regulator,,Class 3,ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCACCATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACATCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTGACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGATGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCTCTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACCAGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAACGGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCTGAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA,MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI,,1791760 ; ,,75% similar to BvgA positive transcription regulator, putative [Bordetella pertussis] ; 86% similar to PUTATIVE TRANSCRIPTIONAL REGULATOR TrpO [Pseudomonas aeruginosa] ; ,PF00072: Response regulator receiver domain ; PF00486: Transcriptional regulatory protein, C terminal ; BL00622: Bacterial regulatory proteins, luxR family signature ; ,Two-component System ; ,,Transcriptional regulators ; Two-component regulatory systems ; ,Cytoplasmic,Class 3,GO:0003700 ;GO:0000156 ;GO:0000160 ;GO:0006796 ;GO:0006355 ;,TIGR02154 ,PhoB ,phosphate regulon transcriptional regulatory protein PhoB ,equivalog ,1.90E-05 ,No Data ,Signal transduction ,Two-component systems ,PF00196 PF00072 ,GerE, Bacterial regulatory proteins, luxR family.. Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.. ,COG2197 ,CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]. ,Signal transduction mechanisms / Transcription 
NC_002516,Chromosome,PA0035,,15595233,Protein,37893,37087,trpA,,tryptophan synthase alpha chain,,Class 1,ATGAGCCGCCTGCAGACCCGCTTCGCCCAGCTCAAGCAGGAAAACCGCGCCGCCCTGGTGACCTTCGTCACCGCCGGCGACCCGGACTACGCGTCTTCCCTGGAAATCCTCAAAGGCCTGCCGGCGGCCGGAGCCGACGTGATCGAACTGGGCATGCCGTTCACCGATCCGATGGCGGACGGCCCGGCCATCCAGTTGGCCAACATCCGCGCCCTGGACGGCGGCCAGACCCTGGCCAGGACGTTGCAGATGGTCCGCGAATTCCGCAGCGGCGACAGCGAGACGCCCCTGGTGCTGATGGGCTACTTCAACCCGATCCACCACTACGGCGTCGAACGCTTCATCGCCGAGGCGAAGGAGGTGGGAGTGGACGGCCTGATCGTGGTCGACCTGCCGCCGGAGCACAACGAAGACCTCTGCCACCCGGCCCAGGCCGCCGGCATCGACTTCATCCGCCTGACCACCCCGACCACCGGCGACCAGCGCCTGCCGACGGTGCTAGAAGGCAGTTCCGGGTTCGTCTACTACGTGTCGGTGGCCGGCGTCACCGGCGCCAACGCGGCGACCCTGGAACACGTCGAGGAAGCGGTGGCGCGCCTGCGCCGGCATACCGACCTGCCGATCGGTATCGGCTTCGGCATCCGCAGCGCCGAACACGCCGCCGCGGTCGCGCGGTTGGCCGACGGCGTGGTGGTCGGCTCGGCGCTGATCGACCGGATCGCCAAGGCCCGCGACAATGCCCAGGCGGTCAAGGATGTCCTCGCCCTGTGCGGCGAGCTGGCCGAAGGCGTGCGCAACGCACGCTGA,MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARLADGVVVGSALIDRIAKARDNAQAVKDVLALCGELAEGVRNAR,,3127651 ; ,trpABI (Pseudomonas aeruginosa) ; ,,BL00167: Tryptophan synthase alpha chain signature ; ,Phenylalanine, tyrosine and tryptophan biosynthesis ; ,4.2.1.20 ;,Amino acid biosynthesis and metabolism ; ,Cytoplasmic,Class 3,GO:0004834 ;GO:0000162 ;,TIGR00262 ,trpA ,"tryptophan synthase, alpha subunit" ,equivalog ,4.20E-80 ,4.2.1.20 ,Amino acid biosynthesis ,Aromatic amino acid family ,PF01884 PF00290 ,PcrB, PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.. Trp_syntA, Tryptophan synthase alpha chain.. ,COG0159 ,TrpA, Tryptophan synthase alpha chain [Amino acid transport and metabolism]. ,Amino acid transport and metabolism 
NC_002516,Chromosome,PA0036,,15595234,Protein,39098,37890,trpB,,tryptophan synthase beta chain,,Class 1,ATGACTTCCTATCGCAACGGCCCCGACGCCAAGGGCCTGTTCGGCCGCTTCGGCGGCCAGTACGTCGCCGAGACCCTGATGCCGCTGATCCTCGACCTCGCCCGCGAGTACGAGAAGGCCAAGGACGACCCGGCGTTCCAGGAGGAACTGGCCTACTTCCAGCGCGACTACGTCGGTCGACCGAGCCCGCTGTACTTCGCCGAGCGCCTGACCGAGCACTGCGGCGGGGCGAAGATCTACCTCAAGCGCGAGGAGCTGAACCATACCGGCGCGCACAAGATCAACAACTGCATCGGCCAGATCCTCCTGGCCCGGCGCATGGGCAAGAAACGCATCATCGCCGAGACCGGCGCCGGCATGCACGGCGTGGCCACTGCCACCGTCGCCGCGCGCTTCGGCCTGCAGTGCGTGATCTACATGGGCACCACCGACATCGACCGGCAGCAGGCCAACGTCTTCCGCATGAAGCTGCTGGGCGCCGAGGTGATCCCGGTGACCGCCGGCACCGGTACCCTGAAGGACGCCATGAACGAGGCGCTGCGCGACTGGGTGACCAACGTCGACAGCACCTTCTACCTGATCGGCACGGTCGCCGGCCCGCATCCGTACCCGGCGATGGTCCGCGACTTCCAGGCGGTGATCGGCAAGGAAACCCGCGAGCAACTGGCCGAGAAGGAAGGGCGCCTGCCCGATTCGCTGGTCGCCTGCATCGGCGGCGGCTCCAACGCCATGGGCCTGTTCCACCCGTTCCTCGACGACGCCGGGGTGCAGATCGTCGGCGTGGAAGCCGCCGGCCACGGCATCGACACCGGCAAGCACGCGGCCAGCCTGAACGGCGGGGTTCCCGGCGTGCTGCACGGCAACCGCACCTTCCTGCTGCAGGACGCGGATGGCCAGATCATCGACGCACACTCCATCTCCGCCGGCCTCGACTATCCCGGCATCGGCCCGGAACACGCCTGGCTGCACGACACCGGCCGCGTCGAGTACACCTCGATCACCGACGACGAAGCCCTGGAGGCCTTCCACACCTGCTGCCGCCTCGAAGGCATCATCCCGGCACTGGAAAGCTCCCATGCCCTGGCCGAGGTCTTCAAGCGTGCGCCCAGCCTGCCCAAGGAGCACATCATGGTGGTGAACCTGTCCGGTCGCGGCGACAAGGACATGCAGACCGTCATGCACCACATGCAACAGGAGTCGAAAGCATGA,MTSYRNGPDAKGLFGRFGGQYVAETLMPLILDLAREYEKAKDDPAFQEELAYFQRDYVGRPSPLYFAERLTEHCGGAKIYLKREELNHTGAHKINNCIGQILLARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLLGAEVIPVTAGTGTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKETREQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAASLNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSITDDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTVMHHMQQESKA,,3127651 ; ,trpABI (Pseudomonas aeruginosa) ; ,,BL00168: Tryptophan synthase beta chain pyridoxal-phosphate attachment site ; ,Phenylalanine, tyrosine and tryptophan biosynthesis ; ,4.2.1.20 ;,Amino acid biosynthesis and metabolism ; ,Unknown,Class 3,GO:0004834 ;GO:0000162 ;,TIGR00263 ,trpB ,"tryptophan synthase, beta subunit" ,equivalog ,1.40E-294 ,4.2.1.20 ,Amino acid biosynthesis ,Aromatic amino acid family ,PF00291 ,PALP, Pyridoxal-phosphate dependent enzyme. Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.. ,COG0133 ,TrpB, Tryptophan synthase beta chain [Amino acid transport and metabolism]. ,Amino acid transport and metabolism 
NC_002516,Chromosome,PA0037,,15595235,Protein,39202,40089,trpI,,transcriptional regulator TrpI,,Class 1,ATGAGCCGCGACCTGCCCTCCCTGAATGCCCTGCGCGCTTTCGAAGCCGCTGCCCGGTTGCACAGCATCAGCCTGGCGGCCGAGGAACTGCACGTTACCCATGGCGCCGTGAGCCGGCAGGTGCGGTTGCTCGAGGACGATCTCGGGGTGGCCCTGTTCGGCAAGGATGGGCGCGGCGTAAAACTCACCGATTCCGGCGTTCGCCTGCGTGACGCCTGCGGCGATGCGTTCGAGCGACTGCGTGGCGTCTGTGCCGAGCTGCGCCGGCAGACCGCCGAGGCCCCGTTCGTCCTCGGCGTACCCGGCAGCCTGCTGGCGCGCTGGTTCATCCCGCGGCTGGACCAGCTCAACCGTGCCCTCCCCGACCTGCGCCTGCAACTGTCCACCAGCGAGGGCGAGTTCGATCCGCGTCGTCCCGGCCTGGACGCCATGCTCTGGTTCGCCGAGCCGCCCTGGCCGGCGGACATGCAGGTCTTCGAACTGGCGCCCGAGCGCATGGGCCCGGTGGTCAGCCCGCGCCTGGCGCAGGAAACCGGCCTGGCCCAGGCGCCCGCCGCGCGGCTGTTGCAGGAGCCGCTGCTGCATACCGCCTCGCGACCCCAGGCCTGGCCGGCCTGGGCCGCGAGCCAGGGGCTGGCGGCGGAGGCGCTGCGCTATGGCCAGGGGTTCGAGCATCTCTACTACCTGCTGGAAGCGGCGGTGGCGGGCCTCGGCGTGGCCATCGCCCCGGAGCCGCTGGTCCGCGACGATCTCGCCGCGGGCCGCCTGGCGGCGCCCTGGGGCTTCATCGAGACCGATGCGCGCCTGGCCCTGTGGGTACCGGCACGCCTCCACGATCCGCGTGCCGGGCGCCTGGCGCAATGGTTGCGGGAGCAGTTGGCAGGCTGA,MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKLTDSGVRLRDACGDAFERLRGVCAELRRQTAEAPFVLGVPGSLLARWFIPRLDQLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFELAPERMGPVVSPRLAQETGLAQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEALRYGQGFEHLYYLLEAAVAGLGVAIAPEPLVRDDLAAGRLAAPWGFIETDARLALWVPARLHDPRAGRLAQWLREQLAG,,2107533 ; ,trpABI (Pseudomonas aeruginosa) ; ,97% similarity to TrpI protein [Pseudomonas aeruginosa] ; ,BL00044: Bacterial regulatory proteins, lysR family signature ; ,,,Amino acid biosynthesis and metabolism ; Transcriptional regulators ; ,Cytoplasmic,Class 2,,TIGR02036 ,dsdC ,D-serine deaminase transcriptional activator ,equivalog ,2.20E-13 ,No Data ,Regulatory functions ,DNA interactions ,PF00126 PF03466 ,HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.. LysR_substrate, LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.. ,COG0583 ,LysR, Transcriptional regulator [Transcription]. ,Transcription 
NC_002516,Chromosome,PA0038,,15595236,Protein,40190,40405,,,hypothetical protein,,Class 4,ATGTCCAATCACCACACCTACAAGAAGATCGAACTGGTCGGCTCGTCCAAGACCAGCATCGAGGACGCCATCAACAACGCCCTCGCCGAAGCGGCGAAGAGCATCCAGCATCTGGAATGGTTCGAGGTGGTGGATACCCGCGGGCACATCGAGAACGGCGCCGTCGGCCATTACCAGGTGACCCTGAAAGTAGGGTTCCGTATCGCCAATAGCTGA,MSNHHTYKKIELVGSSKTSIEDAINNALAEAAKSIQHLEWFEVVDTRGHIENGAVGHYQVTLKVGFRIANS,,,,,,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF07311 ,DUF1458, Protein of unknown function (DUF1458). This family consists of several hypothetical bacterial proteins as well as one archaeal sequence. Members of this family are typically of around 70 residues in length. The function of this family is unknown.. ,COG3360 ,COG3360, Uncharacterized conserved protein [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0039,,15595237,Protein,40589,40816,,,hypothetical protein,,Class 4,GTGTTCATGAAGAAGTTGATGTTGGCAGTCGGCCTGTTTGCCGTGGCGGGCAGCGCATTCGCCGCCAAGCCCTGTGAGGAACTGAAAGCCGAGATCGATGCGAAGATCAAGGCCAACGGCGTTCCTGCCTACACCCTGGAAATCGTCGACAAGGGCAGCGTCACCGACAAGAAGGTAGTCGGCACCTGCGACGGCGGCACCAAGGAAATCGTCTACCAGCGCGGCTGA,MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG,,15687295 ; ,,57% similar to hypothetical protein YnfD [Escherichia coli] ; ,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 21) ; type I export signal computationally predicted by Phobius (cleavage after residue 21) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 21) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF06649 ,DUF1161, Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.. ,,,
NC_002516,Chromosome,PA0040,,15595238,Protein,41113,42801,,,conserved hypothetical protein,,Class 4,GTGGCTCTCCATCGCCTGGCCTTTATCTTCCTGTGCCTGCCGCTCATGGCCAGCGCCGCCCCCTTCACCTCCCCCGGCGACCGCGACCTGATCCGCGACCGCCAGCAGCGCCTGCTGGACGAACAGCGCAAGCGCCTGGAGGAACTCCAGCAACTGCCCGGCAAGGGAGCGCCCGCCGCTGCGGATGCCTCCGGCGGCGACGAGCGCTGCTTCGAGATCCGCCGCATCGAGCTGGAAGGCGCCGGGCACCTCGGCGAAAGCGCGCGTCGCCAGTTGCTGGCGCCCTACCAGGGGCGCTGCCTGGGCGTCGGCCAGCTCAATGCGCTGCTCAAGGCCGTCACCGACCATTACCTGGATCGCGGCTACGTCACCACCCGTGCCTACCTGCCACAGCAGGACCTGGCCTCCGGGACCCTGCGCATCATCGTCGTCGAAGGCCGCCTGGAGGGCCTGGACAGCTCCGCGCTGGCCAGCCCGCGCGAACTGACGATGAGCTTTCCGGGCAGGACCGGCGAGTTGCTCGACCTGCGCGAGCTGGAGCAACTGGTCGACCAGTTGAGCCGCCTGCCGTCGCGCCAGGCGCAACTGGAGCTGGTGCCCGGCAGCGAGGTCGGCGGCAGCCGGGTGCGTCTCAAGGGCGAGCGCGACAAGCCCTGGCGGGTCTCCGCCACGCGCAACAACGACGGCGACGTCAGCACCGGCGAGCAGCAGATGGGCCTGGGCCTGGACTGGGACAGCCCGCTGGGCCTGGCCGACCAGCTCAACCTGCGCGCCAACCGCGACGCGGTGACCGACCGCTGGCGCCATTCCGACAGCCAGAGCCTGTTCTACAGCCTGCCCTGGGGCTGGTGGACCTTCACCTACGGCTACAGCCAGAGCGACTACCGCACGCGCAACGAGGCCAGCGGCTTCCCCTTCAAGCTCGATGGCGACAGCCGCAGCCACCAGTTCCGCGCCGAACGCGTGCTGCACCGCGACGGTGTGAGCAAGACCGCCATGAGCCTGGGGCTCAGCCACCAGCGCACCAACAACTATGTCGAAGACACCCGCCTGGAAGACCAGAGCACGCGGATCACCGAGACCCAGCTCGGCTTCAACCATGGCCGGCGGATCGGCAGCGGCTTCGTCAACCTCGACCTCGGCTGGCAGCAGGGCATCGGCGCCCTTGGCGCGCAGGGTCGCGGCCACCCGCAGGCGGGCGATCCGAATGCGCGCTACGACAAGTACAGCCTGACCCTCAGCTACCTGCAGCCGTTCCAGCTATGGGGCGAGCGCTTCAGCTTCGACAGCCTGGCCACCGGGCAGAGGAGCGAGGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGCAACAGCTCGGTGCGCGGCTTCAAGGACCAGACCCTGACCGGCGACAGCGGCGGCTACTGGCGCAACCAGTTGCGCTGGCGGCGCGCGGTGGAGTGGGCGCCGCTGCGGCCCTGGCTGCAGGAATACGGCGTGGCCTTCGCCTACGACGTCGGCGTGATCCGCCACGACCGCTACAACGACGGCGCCAGCGGGCGCATGAGCGGCAACGCCATCGAACTGGATGCCCGCGGCCGCTATTTCGCCGCCAGCGTCGGCTTCGCCCGCTCGCTGGAGCGGCCCAGCGCCATCGAGCGGCGCGAGCACCCGATCTATTTCCGGGTCGACGCGTTCTTCTGA,MALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRKRLEELQQLPGKGAPAAADASGGDERCFEIRRIELEGAGHLGESARRQLLAPYQGRCLGVGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVVEGRLEGLDSSALASPRELTMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERDKPWRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLFYSLPWGWWTFTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMSLGLSHQRTNNYVEDTRLEDQSTRITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQGRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLATGQRSEDVLFSPQRISLGGNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVIRHDRYNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF,,15687295 ; 2407716 ; ,,48% similar to hemolysin activator protein HpmB precursor [Proteus mirabilis] ; ,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 19) ; type I export signal computationally predicted by Phobius (cleavage after residue 19) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 19) ; ,,,Hypothetical, unclassified, unknown ; ,Outer Membrane,Class 3,,,,,,,,,,PF03865 PF08479 ,ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB. This family represents a group of sequences that are related to ShlB from Serratia marcescens. ShlB is an outer membrane protein pore involved in the Type Vb or Two-partner secretion system where it is functions to secrete and activate the haemolysin ShlA. The activation of ShlA occurs during secretion when ShlB imposes a conformational change in the inactive haemolysin to form the active protein.. POTRA_2, POTRA domain, ShlB-type. The POTRA domain (for polypeptide-transport-associated domain) is found towards the N-terminus of ShlB family proteins (pfam03865). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel.. ,COG2831 ,FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]. ,Intracellular trafficking and secretion 
NC_002516,Chromosome,PA0041,,15595239,Protein,42914,53521,,,probable hemagglutinin,,Class 3,ATGGACATCCGCAGCCCGCTGAACCAGTGCATCGCCCTGTCCCTGGCCGGCATCTTGTTCCTCAACCCGATCGTCGCCGCGGCGGCGGGGCTGGCGCTGGACAAGGCCGCCGGCGGCAACACCGGCCTGGGCCAGGCGGGCAACGGCGTGCCCATCGTCAATATCGCCACGCCCAACGACGCCGGGCTGTCGAACAACCATTTCCGCGACTACAACGTCGGCGCCAACGGGCTGATCCTCAACAACGCTACCGGCAAGACCCAGGGTACCCAGCTCGGCGGGATCATCCTCGGCAACCCCAACCTCAAGGGCCAGGCGGCGCAGGTGATCCTCAACCAGGTCACCGGCGGCAACCGCAGCACCCTGGCCGGCTACACCGAGGTGGCCGGGCAGTCGGCGCGGGTGATCGTCGCCAACCCGCACGGCATCACCTGCCAGGGCTGCGGCTTCATCAACACGCCGCGCGCGACCCTCACCACCGGCAAGCCGATCATGGACGGCCAGCGCCTGGAGCGCTTCCAGGTGGACGGCGGCGACATCGTCGTCGAAGGCGCCGAACTGAACGTCGGCAACCTCGAACAGTTCGACCTGATCACCCGCAGCGCCAAGCTCAACGCCAAGCTCTACGCGAAGAACCTCAACATCGTCACCGGCCGCAACGACGTCCAGGCCGACAGCCTGCAGGCCACGCCGCGCGCCGCCGATGGCAGCGAGAAGCCGCAGCTGGCGATCGACAGCTCGGCGCTGGGCGGGATGTACGCCGGGGCGATCCGCCTGGTCGGCACCGAGCAGGGCGTGGGGGTGCGGCTGGCCGGCGACATGGCCGCCAGCGGCGGCGACATCCGCATCGACGCCAGCGGCAAGCTGAGTCTGGCCCAGGCCTCCAGCCAGGGCGACCTGAAGATCGCGGCCCAGGCCGTGGAGCTGAATGGCAAGACCTACGCCGGCGGCAGCGCCGAGATCCGCAGCGCGGAGGAACTGGTCAACCGGCAGAGCCTGGCGGCGCGCGAACGCATCGTGCTGGAGGCGGCGCATATCGACAACGCCGGGGTGATCGAAGCCGGCGTCGAGCCAGACGAGCGACGCAACGCGCGCGGCGACCTCGAGCTGCGCAGCGGCACCCTGCGCAACGCCGGCAGCCTGGTGGCCAGCCGCGCGCTGGAAGCGAAGGCGAGCCAGGCGCTGGACAACCAGGGCGGCAGCCTGAAGGGGGCGACCGTCCGGGTCGACGCCGGGCACCTGGACAACCGTGGCGGCAAGCTGCTCGCCGAGGGCGAACTGCGGGTCGAGGCGAGCAGCCTGGACAACCGCCAGGACGGCCTGTTGCAGAGCCGGGACCGCGCCGTGGTCAAGACCCGTGGCGATCTCGACAACCGTGGCGGCCAGGTGATCGGCCTGAACGATCTGGAGGTCGGCGCGGCGACGCTCGACAACGGCCAGCAAGGCCTGCTCGGCAGCCAGCAGTCCACCCGCGTCAGCGCCCAGGCGCTGGTCAACCGGGGGGACGGCGAAGTCTCCGGCAAGCGCGTCGAGGCTCGCGTCGGTAGCCTCGACAATCGCGGCGGCAAGCTGATCGGCGACGACCTGCTGGTGGTCGCCAGCGGTGCCATCGACAACCGCCTCGGCTTGTTCTCCGCAGCCAACCGCCTCGACCTGCGGGCGCGCAGCCTGGACAACAGCGGCAAGGGCACGCTGAGCAGCCGGGGCGGCCTGGAGGTCAGCCTCGGCGGCCTGCTGGACAACCGCGATGAAGGCAACCTGCTCAGCCAGGGCGCGCAGCGCGTGACGGTGGGGCAACTGGACAACCGCGCCGGCGGCCTGCTGTCGAGCCGCAGCGAGTTGAACGTCCACGGCGCCAGCCTGGACAACCGTGGCGGCGTGCTGGTGGCCGACGCCGGCCTGAGCGCCACGGGAGGCGCCTTCGACAACCGCGACGGCGGCAGCGCCAGCGGCAAGGCTGGCGTGCGCGTGGAGGTCGCCAGCCTGCGCAACGACCAGGGTGGCAAGCTGCTCAGCGATGGCCGCCTGGACCTCGCAGCGAACGCCGTCGGCAACGCCGGAGGGCGTATCGCCGCCAAGGGCGACCTGCAGGCGACGCTTGGCAGCCTGGCCCAGCAAGGTGGCGAACTGGTCAGCGAAAAGACCCTGAAGGTCGCGGCCGACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGCGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGTCGGCTCGACAGCCAGAACAGCCTGAGCGTGAGCCTCGGCGGCGTGCTGGACAACCAGGGCGGCGCGCTGGTCAGCGAAGGCAGCCTGACGGCGCGCGCCGCGCGCCTGGACAACCGTGGCGGGACCTTCTCCAGCGCCGGTGCGCTGGCGCTGACCAGCCAGGCCGCGCTGGACAACCAGGGCGGCAGGCTGCTCAGCGATGCCGGCGTGACGCTGCAGGGCGCCAGCCTCGACAACAGCCGTTCCGGCGTGATCAGCGCCAAGGGCGCGGTGGATATCCGCACCGGCGTACTGGACAACAGCCGCAACGGCGGCATCGGCAGCAACGCCGGCATCACCCTGGTGGCCGCCCGGCTGGACAACGGCCAGCAGGGCCGGGTCAGCGCCAAGGGCCTGCTCGACGCCAACCTGAAAGGCCTCGACCAGCGCGGAGGCGGCGTCCTGATCAGCGAAACCGGCGTCACCCTCGACCTCAATGGCGGCACGCTGGTCAACCGCGACGGCGGCCTGATCGCCACGCCCGGCGCGCTGCTGCTGCGCCAGCTCGGCGCGGTGGACAACGGCGCCGGCGGGGAAATCTCCAGCGACCGCGCCTTCACCCTCGCCGCCGCCAGCCTGGACAACCGCGGCGGGCGCCTGATCGGCGCCGCCAACCTGACCCTGCGCATCGCCCAGGCCCTGGACAACAGCCTGGCCGGGGTGATCTCCGGCGCCGCCGGCCTGGACATCGCGGCCGCTCGCCTGGACAACAGCGCCAAGGGCACCCTGGCCAGCCGCGCCGGCATCGACCTGCGCGTCGATGGCGCGCTGGACAACCACGCCGAAGGCACCGTCTCCGGCGCCCGCCTGACGCTCGCCAGCGCCTCGCTGGACAACAGCGGCAAGGGCCTGCTCTCCGGCAACGCCGGCCTGAGCGTCGCCACTGGCGCGCTGGACAACGCCGAGGGTGGCCAGTTGATCAGCCAGGGCGTCCTGGACGTCAGCAGCGCCGACCTCGACAACCGTGGCGGCGCCCTCAGTGGCAAGCAGTCGCTGCGCCTGAGCGCCGCCAACCTGGACAACCGTGGCGGCCTGCTCACCAGCGACGGCGAACTGGAACTGACGGCAGGGCGCGTCGATTCCGCCGACGGCGGCGAAATCTCCGCCCGGGGCGACCTGCGCCTGACGGTCGAGCGCCTGGTGCAACGCCAGGGCCGGCTGGTCGGCGAGCGCGGCGTCAGTCTCGACCTGCGGGGCGGCGACCTGGACAACCAGGGCGGCCTGATCAGTGCCCGCGGCCCGCTGAGCATCGAGCGGCTGAGCGTCCTCGACAACCGCCAGGGCGGCGAGATTTCCAGCCAGCAGGGCTTCGAGCTGCTGGCCAGGCGCATCGACAACGGCCAGCAGGGGCGCATCATCAGCGCCGGGAAACTGCGCCTAGACGCCGACGCGCTGGGCAACGCCGGCGCCGGCCTGCTCTCCGGATGGCAGGGCCTGACGGTGACAGGCGGGAGCCTGGACAACAGCGCCGGCGGCACCCTTTCGAGCAAGGACGGCGAGCTGGCCATCAGCCTCGGCGGCGCGCTGGACAACCACGGCCAGGGCGCGCTGGTCAGCAAGGGCGCGCAACGGATCGACGCCGCCAGCCTGGATAACGCCCAGGGCATTGTCTCCGGCGAAAGCGACGTGACCCTGAGCATCGCCGGGAAGCTGGACAACGGCCAGGGCGGCCTGGTCTCGGCGCAGCGCGCGCTGAGCTTCGAGCGCGACGATACGCTGCTGAACAACGCCGGCGGCCGGATCAACGGCGGCAGCCTGCTGCTCAAGGGCGCCAGCCTGGATAACAGCGACGGCCAGTTGATCAGCCAGGGCCGGCTCGACGCCATCCTCGGCGGCGCCCTGGTCAACACCGGCGCGGCGCGCCTGGCCAGCGGCGGCGACCTGCTGCTGCGCAGCGCCAGCGTCGACAACCGCGGCGGCAAGCTGGTCAGCCAGGGGCTGCTGGAGATCAGCGCCGGCAGCCTCGACAACAGCGCCTCCGGCACCCTCGCCAGCCAGGCCGGCATGAGCCTGCGCCTGGGCGGCGGCGCCCTGCGCAACCAGCAGGACGGCCTGATCTTCAGCCAGGCCGGCGCCCTCGATGTGCAGGCCGGCAGCCTGGACAACCGCCAGGGCACGCTCCAGGCCCAGGGCGACAACCGGCTGCGTATCGGCGGCGCGCTGGACAACCAGGGCGGCCGCCTGGACAGCCGGGCCGGCAACCTCGACCTGCAGAGCGGCAGCCTCGACAACGGCGCCGGCGGCGTGCTCAACAGCGCCAAGGGTTGGCTGAAGCTGGTCACCGGGCTGTTCGACAACAGCGCCGGCGTCACCCAGGCGCAGTCGCTGGAGATTCGCGCCGGGCAAGGCGTGCGCAACCAGCAGGGCCACCTCTCGGCGCTGGGCGGCGACAACCGCATCGTCACCGCCGACTTCGACAACCAGGGCGGCGGCCTCTACGCCAGCGGCCTGCTCAGCCTCGACGGCCAGCGCTTCCTCAACCAGGGCGCGGCGGCGGGCCAGGGCGGCAAGGTCGGCGCCGGGCGCATCGACTTCAGCCTGGCCGGCGCGCTGGCCAACCGCTTCGGCCAGTTGGAAAGCGAAAGCGAGCTGCACCTGCGCGCCGCCGCGATCGACAACAGCGGCGGCAGCCTGCGCGCCCTCGGCCGCAGCGGCAGCACGCGGTTGGTCGCTGGCGGCCTGAACAACGCCTACGGCGTGCTGGAAAGCGCCAACCAGGACCTCGACCTGCAACTGGGCAGCCTGGCCAACGCCGGTGGGCGCATCCTCCACACCGGCAATGGCACCTTCGGCCTGGATTCCGGGCAGGTGATCCGCGCCGGCGGCGAACTGACCACCAATGGCCTGCTGGACATCCGCGCCAGCGAATGGACCAACAGCAGCGTGCTGCAAGCCGGACGCCTGAACCTGGACATCGGCACCTTCCGCCAGACGGCCGAGGGCAAGCTGTTGGCGGTGCAGTCCTTCACTGGCCGCGGCGGCGACTGGAGCAACGACGGCCTGCTGGCCAGCGACGGCAGCTTCCGCCTCGACCTGAGCGGCGGCTACCGTGGCAACGGCCGCGCCACCAGCCTCGGCGACTTCGCCCTGAACGCCGCCAGCCTCGACCTCGGCAACGCCGCCAGCCTCGCCGGCGGTGCCAATGTCACGCTCGGCGCCGGCAACCTGCTGGTCAACCGTGGGCGGATCACCGCCGCCGGCGACCTCGTGGCCAGCGCCGCGAGCCTGAACAACTACGGCACCCTGGGCGGCGGCGGCAACCTGCGATTGAACGCGCCCGCCCTGCTCAACGAGCGCGGGTTGCTGTTCAGTGGCGCCGACATGACCCTGCGCGCCGGCGACATCACCAACCTCTACGGGGATGTGTACAGCCTCGGCAGGCTGGATATCGCCCGCGACGATGCGGGCAACCGTGCCGCCAGCCTGCGCAACCTTTCCGGGGTGATCGAGAGCGGCAAGGACTTCAGCCTGCGTGCCAGCCTGATCGAGAACCGTCGCGCCGTGCTGGAAAGCAAGTCGGGCCTGTACACCGCGAAGATGGAGCAGACCGCCTGCATCGAAGGCGTCAACGCGGGCGACTGCAGCGGCAAGCGCAACGCCATCTGGACCATCACCCAGCGCGACAAGACCGAGGTCACCGCCAGCAGCGCCATGGGGCAACTGCTGGCCGGAGGCGACTTCGCCATCGACGGCGGCACCCTGAACAACCTTTCCAGTCTGATCGGCAGCGGCGGCAACCTCACCGCCAACCTCGAAGTCCTCGACAACCAGGGCCTGGAAACCGGCGAGCTGGAAACCATCCGCGTGCTGCGTACCGCTCGCGGCGGCGATATCGGCGGCATCGACCAGAAGTCGCGCAACTTCACCAACCTCTACTGGTACCAGAGCGCCAATTTCGACCCGGCGCGCGCGGGCGAGATCCCCGCCGCGCTCAACGCGATCCTCAGCGACTGGTCCTTCGAGTACGAATTCCCGAGCAAGGGGCCGACCCCGATCAGCAGTGGCGACCAGTCCTACGCAGCGGTGATCCAGGCCGCCGGCGACGTCACGGTCAATGCCAGCACGCGCATCGACAACGGCGTCACCCGCCCCGGCTACACCTTCGTCGGCAGCGGCCGCCAGGTGGGCGACAGCGCGGTGGGCGGCAGCGGGGTTTCGGTGGTCGTGCCGCTGACCTCGCAACTGCCGCCCGACCTGGCGCGGCGCCAGGTCAACCCGGTTACCCTGCCCGGCTTCAGCCTGCCCCAGGGTGACAACGGCCTGTTCCGTCTCAGCTCGCGCTTTGCCGAGGACGGCAATGGCAGCGCCGCGCTCGGTGCCGGCGCCGACCGCACCCAGGGCGGTAGCGGCGTCTCGGTCGGCCAGCAAGGCGCCGGCAACGCCGCCGGTACCTGGCAGGGCCAGGGCGTGCGAGTCGACGGCCTGGCTGGCGCGGCCAACGTCCAGGGTCAGGGCGGCAGCACGCTCGGCGGTAGCCTGCCGGGCGTCGCCCGGGTCCAGGGCGTGCCCGGCAACGCCACGCCGAGCGCCAGCCACAAGTACCTGATCGAGACCAACCCGGCGCTCACCGAACTGAAGCAGTTCCTCAACTCGGACTACCTGCTCAGCGGCCTGGGCATGAACCCGGACGATAGCAAGAAGCGTCTCGGCGACGGTCTCTACGAGCAGCGGCTGATCCGCGACGCGGTGGTGGCGCGCACCGGCCAGCGCTACATCGACGGGCTGAGCAGCGACGAGGCGCTGTTCCGCTACCTGATGGACAACGCCATCGCTTACAAGGACCAACTGCACCTGCAACTGGGTGTGGGCCTGAGCGCGGAGCAGATGGCGGCGCTGACCCACGACATCGTCTGGCTGGAAGAGGTCGAGGTGAACGGCGAGAAGGTCCTCGCGCCGGTGGTCTACCTGGCCCAGGCGGAGGGTCGGCTGGCACCCAACGGTGCGCTGATCCAGGGCCGCGACGTGAAGCTGGTGAGCGGCGGCGACCTGCATAACGTCGGCACCCTGCGCGCGCGGAACGACCTCTCGGCGACGGCCGACAACCTCGACAACAGCGGCCTGATCGAGGCCGGCAAGCGCCTCGACCTGCTCGCCGGCGACTCGATCCGCAACCGCCAGGGCGGGGTCATCGCCGGGCGTGACGTGAGCCTCACCGCGCTGACCGGCGACGTAATCAACGAACGCAGCGTGACCCGCTACGACAGCGCGCTCGACGGCCGCACCTGGGAACGCAGCTTCGCCGACAGCGCCGCGCGGGTGGAGGCGGCGAACAGCCTGAACGTCCAGGCCGGACGCGACATCGCCAACCTCGGCGGGGTGCTGCAGAGCCGCGGCGACCTCAGCCTCGACGCCGGACGCGACGTCACCGTCGCCGCCGTCGAGGACCGCCAGGGCCAGACCCGCTGGAGCACGTCGCGGCTCCAGAGCGTGACCCAGCTCGGCGCCGAAGTCAGCGCCGGGCGGGACCTGAACGTCAGCGCCGGCCGCGACTTGACGGCGGTGGCCAGCACCCTCGAAGCGCGCCGCGACATCGCCCTCTCCGCCGGGCGCGACGTGACCCTGGCGGCGGCGGCGAACGAGGAGCATGCCTACAGCAAGACCAGGAAGGTCACCTACCAGGAAGACAAGGTCGCCCAGCAAGGCACCCGCGTGGACGCCGGCGGCGACCTGGCGATCAATGCCGGACAGGACCTGCGCCTGATCGCGAGCCAGGCCAGCGCCGGCGACGAGGCCTACCTGGTGGCCGGCGACAAGCTGGAACTGCTGGCCGCCAACGACAGCAACTACTACCTGTACGACAAGAAGAAGAAAGGCGACTTCGGCCGCAAGGAAACCCGGCGCGACGAAGTCACCGACGTCAAGGCGGTGGGCAGCCAGATCAGCAGCGGCGGCGACCTCACCCTGCTCAGCGGCGGCGACCAGACCTACCAGGGCGCGAAGCTGGAATCGGGCAACGACCTGGCCATCGTCAGCGGCGGCGCGGTGACCTTCGAGGCGGTGAAGGACCTGCACCAGGAAAGCCACGAGAAGAGCAAGGGCGACCTGGCGTGGAACAGCGCCAAGGGGAAAGGGCAGACCGATGAAACGCTTCGGCAGACCCAGATCGTGGCCCAGGGGAATCTGGCGATCAAGGCCGTGGAAGGGCTGAAGATCGACCTCAAGCATATCGACCAGAAGACCGTAAGCCAGACCATCGACGCGATGGTGCAGGCGGATCCGCAACTGGCGTGGCTGAAGGAGGCCGAGCAGCGCGGGGATGTGGACTGGCGCATGGTGCAGGAGGTGCACGATAGCTGGAAGTACAGCAACTCGGGCATGGGGCCGGCGACGCAGATCGCTGTCGCCATCGCGGCGGCAGCCATCGGTGGCATGGCGGCAGCGGGAGCGCTCAGTGGTGCAGGAGTGGGTGCCAGTAGCTTCGCCATGGGCGCAGGAGTTGGTGCGGCAGGAAGCCTGTCGGGCACGGCAGCGGTCAGCCTGATCAACAACAAGGGCGATCTCGGGAAGGTGCTGAAAGACAGCTTCAGTAGTGACAGTCTGAAGCAGATTGCTATTGCGAGCCTGACCGGGGGGCTGACGGCTGAGTACTTCGACGGGATTCTTCAGACCAAGACTGATCCGCTTACTGGAAAGGTCACGGTAGACCTCAGCAGCCTATCTGGTGTTGGTCGCTTCGCTGCCAATCAGGCGATGCAGAACGCTACATCCACTGTACTGAGCCAGGCCTTGGGCCAGGGCGGGAGCCTGAACGAGGCGCTGAAGAGCGCGCTCTACAACAGTTTCGCGGCGGCAGGTTTCAACTTCGTCGGCGATATCGGCCAGGAATACAGCCTGAAGCCAGGCGATCCTTCGATGGTGACCATGCACGCCCTGATGGGTGGCCTGGCGGCGCAGGTCAGCGGTGGCGATTTCGCCACGGGCGCCGCGGCGGCTGGCGCCAATGAAGCGCTGGTGGCCAAGCTAGACCAGGCCTTCAAGAGCTTGAGCCCTGAGAACCGTGAAGCCATGGTCACTATGGGGTCGCAATTGGTTGGTGTTCTGGCTGCGGCGGTACGCGATCCTGATGTGACAGGCAAAGCTCTGGAAAGCGCTGCTTGGGTAGCGAAGAACTCGACGCAATACAACTTCCTCAACCATCAGGATGTGGCCGATCTGGATAATGCCTTGCAGAAATGCAAGTCCCAGGGAAATTGCCGTCAGGTAGAGGAAGAGTTCAAGGCGCGTAGCGACGAGAACCGGCGGAGGTTGAATGGCTGCGTGGCTGTGGGTAATTGCGCGGAGATTCGTGCGGAGATCGATGCGGGGTCTACGGCTCTCAACGAGCTGGTGGCCCGGCAGGAAACAGCTAATCCGGGAGGAAGTGACAGCGATATAGCCTACGGTTTCCTGATGGGCCGAAATGTTGTCGACTGGACGACGGCTGGTCAGTTGCACCTGGAGCAGACCGCCAACCTCTGGTGGAACGGTAATCCACAGTGGCAGAAGGAAGTCGGTGCATACCTAGACCAGACGGGGTTCAATCCGTTCGGAATCGGCGTTCCGGCAATGGGCGGTGCCGCTGGCAAGGTAACGGCCAAGGCGCTCATGAATGCGCTGAAGGCGGGAGAGTTGCCCAAAGGAGAGGTGGCCCCAGGAAAGGCTAATCTGCCTACCATTGGGGCGTTGGCGGATGCTGAGGCGGGAATGCCTTATACCCATCCAGTTAAGCTCGCCGCAAAAGCGACTGGGACAGCAGGGAAGATTAAGATTGAAGCCGGCGCAATACCTGACGCAAATGAAGTACGTGCAGGACAAGGGTTATCTGGTCTTGGGTACGATGTTACGCACCAAACCACTGCGTCAGCTAAAGGTATTCAAGGGCAGCGAACTGCGGACTTGCATGTTGATGGACTCGGTTCCATTGATGTGTATACGCCGAAGAATCTTGATCCGACAAAGATAGTTCGAGCGATAGAGAAGAAGTCGAATCAAGCCGGCGGAGTCTTGGTGCAGGCGGACTTGCCAAGCACTGACATGTCGTCCATTGCTGCTCGTATGTGGGGGAAGACTAACGCGCAGAGTATAAAAACTATATTTTTCCAGAAACCAGACGGATCATTGGTCCGATTTGATCGACCTGCTGGAGGAGGCTGA,MDIRSPLNQCIALSLAGILFLNPIVAAAAGLALDKAAGGNTGLGQAGNGVPIVNIATPNDAGLSNNHFRDYNVGANGLILNNATGKTQGTQLGGIILGNPNLKGQAAQVILNQVTGGNRSTLAGYTEVAGQSARVIVANPHGITCQGCGFINTPRATLTTGKPIMDGQRLERFQVDGGDIVVEGAELNVGNLEQFDLITRSAKLNAKLYAKNLNIVTGRNDVQADSLQATPRAADGSEKPQLAIDSSALGGMYAGAIRLVGTEQGVGVRLAGDMAASGGDIRIDASGKLSLAQASSQGDLKIAAQAVELNGKTYAGGSAEIRSAEELVNRQSLAARERIVLEAAHIDNAGVIEAGVEPDERRNARGDLELRSGTLRNAGSLVASRALEAKASQALDNQGGSLKGATVRVDAGHLDNRGGKLLAEGELRVEASSLDNRQDGLLQSRDRAVVKTRGDLDNRGGQVIGLNDLEVGAATLDNGQQGLLGSQQSTRVSAQALVNRGDGEVSGKRVEARVGSLDNRGGKLIGDDLLVVASGAIDNRLGLFSAANRLDLRARSLDNSGKGTLSSRGGLEVSLGGLLDNRDEGNLLSQGAQRVTVGQLDNRAGGLLSSRSELNVHGASLDNRGGVLVADAGLSATGGAFDNRDGGSASGKAGVRVEVASLRNDQGGKLLSDGRLDLAANAVGNAGGRIAAKGDLQATLGSLAQQGGELVSEKTLKVAADTLDNSQSGLIAANGGIAIEARQVDNRAGEISSTSKVAVNAREQLDNRGGKVIGDSGLRLTVQRLLNQAKGVLAGRDGLSLDGGELFNGDGGRLDSQNSLSVSLGGVLDNQGGALVSEGSLTARAARLDNRGGTFSSAGALALTSQAALDNQGGRLLSDAGVTLQGASLDNSRSGVISAKGAVDIRTGVLDNSRNGGIGSNAGITLVAARLDNGQQGRVSAKGLLDANLKGLDQRGGGVLISETGVTLDLNGGTLVNRDGGLIATPGALLLRQLGAVDNGAGGEISSDRAFTLAAASLDNRGGRLIGAANLTLRIAQALDNSLAGVISGAAGLDIAAARLDNSAKGTLASRAGIDLRVDGALDNHAEGTVSGARLTLASASLDNSGKGLLSGNAGLSVATGALDNAEGGQLISQGVLDVSSADLDNRGGALSGKQSLRLSAANLDNRGGLLTSDGELELTAGRVDSADGGEISARGDLRLTVERLVQRQGRLVGERGVSLDLRGGDLDNQGGLISARGPLSIERLSVLDNRQGGEISSQQGFELLARRIDNGQQGRIISAGKLRLDADALGNAGAGLLSGWQGLTVTGGSLDNSAGGTLSSKDGELAISLGGALDNHGQGALVSKGAQRIDAASLDNAQGIVSGESDVTLSIAGKLDNGQGGLVSAQRALSFERDDTLLNNAGGRINGGSLLLKGASLDNSDGQLISQGRLDAILGGALVNTGAARLASGGDLLLRSASVDNRGGKLVSQGLLEISAGSLDNSASGTLASQAGMSLRLGGGALRNQQDGLIFSQAGALDVQAGSLDNRQGTLQAQGDNRLRIGGALDNQGGRLDSRAGNLDLQSGSLDNGAGGVLNSAKGWLKLVTGLFDNSAGVTQAQSLEIRAGQGVRNQQGHLSALGGDNRIVTADFDNQGGGLYASGLLSLDGQRFLNQGAAAGQGGKVGAGRIDFSLAGALANRFGQLESESELHLRAAAIDNSGGSLRALGRSGSTRLVAGGLNNAYGVLESANQDLDLQLGSLANAGGRILHTGNGTFGLDSGQVIRAGGELTTNGLLDIRASEWTNSSVLQAGRLNLDIGTFRQTAEGKLLAVQSFTGRGGDWSNDGLLASDGSFRLDLSGGYRGNGRATSLGDFALNAASLDLGNAASLAGGANVTLGAGNLLVNRGRITAAGDLVASAASLNNYGTLGGGGNLRLNAPALLNERGLLFSGADMTLRAGDITNLYGDVYSLGRLDIARDDAGNRAASLRNLSGVIESGKDFSLRASLIENRRAVLESKSGLYTAKMEQTACIEGVNAGDCSGKRNAIWTITQRDKTEVTASSAMGQLLAGGDFAIDGGTLNNLSSLIGSGGNLTANLEVLDNQGLETGELETIRVLRTARGGDIGGIDQKSRNFTNLYWYQSANFDPARAGEIPAALNAILSDWSFEYEFPSKGPTPISSGDQSYAAVIQAAGDVTVNASTRIDNGVTRPGYTFVGSGRQVGDSAVGGSGVSVVVPLTSQLPPDLARRQVNPVTLPGFSLPQGDNGLFRLSSRFAEDGNGSAALGAGADRTQGGSGVSVGQQGAGNAAGTWQGQGVRVDGLAGAANVQGQGGSTLGGSLPGVARVQGVPGNATPSASHKYLIETNPALTELKQFLNSDYLLSGLGMNPDDSKKRLGDGLYEQRLIRDAVVARTGQRYIDGLSSDEALFRYLMDNAIAYKDQLHLQLGVGLSAEQMAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLAPNGALIQGRDVKLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGRDVSLTALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLGGVLQSRGDLSLDAGRDVTVAAVEDRQGQTRWSTSRLQSVTQLGAEVSAGRDLNVSAGRDLTAVASTLEARRDIALSAGRDVTLAAAANEEHAYSKTRKVTYQEDKVAQQGTRVDAGGDLAINAGQDLRLIASQASAGDEAYLVAGDKLELLAANDSNYYLYDKKKKGDFGRKETRRDEVTDVKAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFEAVKDLHQESHEKSKGDLAWNSAKGKGQTDETLRQTQIVAQGNLAIKAVEGLKIDLKHIDQKTVSQTIDAMVQADPQLAWLKEAEQRGDVDWRMVQEVHDSWKYSNSGMGPATQIAVAIAAAAIGGMAAAGALSGAGVGASSFAMGAGVGAAGSLSGTAAVSLINNKGDLGKVLKDSFSSDSLKQIAIASLTGGLTAEYFDGILQTKTDPLTGKVTVDLSSLSGVGRFAANQAMQNATSTVLSQALGQGGSLNEALKSALYNSFAAAGFNFVGDIGQEYSLKPGDPSMVTMHALMGGLAAQVSGGDFATGAAAAGANEALVAKLDQAFKSLSPENREAMVTMGSQLVGVLAAAVRDPDVTGKALESAAWVAKNSTQYNFLNHQDVADLDNALQKCKSQGNCRQVEEEFKARSDENRRRLNGCVAVGNCAEIRAEIDAGSTALNELVARQETANPGGSDSDIAYGFLMGRNVVDWTTAGQLHLEQTANLWWNGNPQWQKEVGAYLDQTGFNPFGIGVPAMGGAAGKVTAKALMNALKAGELPKGEVAPGKANLPTIGALADAEAGMPYTHPVKLAAKATGTAGKIKIEAGAIPDANEVRAGQGLSGLGYDVTHQTTASAKGIQGQRTADLHVDGLGSIDVYTPKNLDPTKIVRAIEKKSNQAGGVLVQADLPSTDMSSIAARMWGKTNAQSIKTIFFQKPDGSLVRFDRPAGGG,,12724392 ; 15687295 ; 2539596 ; ,,43% similar to regions of filamentous hemagglutinin [Bordetella pertussis] ; ,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 28) ; type I export signal computationally predicted by Phobius (cleavage after residue 26) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 28) ; ,,,Secreted Factors (toxins, enzymes, alginate) ; ,Extracellular,Class 1,,TIGR01731 ,fil_hemag_20aa ,adhesin HecA family 20-residue repeat (two copies) ,No Data ,0 ,No Data ,No Data ,No Data ,PF04830 PF05860 ,DUF637, Possible hemagglutinin (DUF637). This family represents a conserved region found in a bacterial protein which may be a hemagglutinin or hemolysin.. Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.. ,,,
NC_002516,Chromosome,PA0042,,15595240,Protein,56546,56941,,,hypothetical protein,,Class 4,ATGCCGGTACTGGCTCTGAGACTCACCGCCCTGGCGGCCCTTGTGATCAGCGTGTCGGGGTGCGTCATGGAGGCCTATGGCAGTCGCGCGCGTAGCGATGCGCAGTCCTGGATCGGCTTGCCGATCCAGGATGTGATCAAGCGCTTCGGCGAGCCGGAACGTGTGACGGGGGATGCCGCCAGGCAGAAGTACGTGTGGAAGGAGTACGAGAACTATAGCCACGACTACGACTACACCTACTACGAGCAGGGCCATGGCAATACGCCCAACAGCTCGGTCCTGAACCAGAAGACCGGCACGGCCAACCAGAGCGGCTATTACACCTGCATCTACGAGTTCTTTGCCGACGCCTCGGGCAGGGTGGTCGATGCGACCGCGCGGGGTGAGTGCCGCTAG,MPVLALRLTALAALVISVSGCVMEAYGSRARSDAQSWIGLPIQDVIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTANQSGYYTCIYEFFADASGRVVDATARGECR,,15687295 ; ,,,PSORT predicted signal peptide or lipoprotein ; Type II (lipoprotein) export signal predicted by LipoP (cleavage after residue 20) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0043,,15595241,Protein,58594,57212,,,hypothetical protein,,Class 4,ATGGGATATTGGCGGCAGCGACGGGCTCTTGGTGGACGGCGCACCGCCGTGCGGGCACCTCGGGGTCGTCTGCTGCTATGGTGCGCACAGGCACGTCGCCATCCTCTCTCCCGGCGAATGGAATCGAGCATGACGCTTTCCCTGGATCTGTTGTTGAGCCTGTGCACGGCCCTGGCCATCGGCCTCCTGATCGGCGCCGAGCGCGGCTGGCAGGAGCGCGACCACGAAGATGCGCGGCAGATCGCCGGAATCCGCACCTTCAGCCTGGCCGGCCTGCTCGGCGGCTTCGCCACCCTGCTGGCGGGCGAACTGGGCAGCGCGGTCTGGGTAGCCTTGCTGCTGGCCCTCGCGGCGCTGGCCGTGGCCGGCTACGTGAGCGATGTCAGGCGTGGCGGCGACCAGGGCATGACCACCGAGATCGCCCTGCTGATGACCTTCCTCCTCGGCAGCCTCGCCCTCACCGAACAGCGCCTGCTGGCTGCCGCCGGCGGCATCGTGCTGACCCTGCTGCTGAGCCTCAAGGACAAGCTCCACGCCCTGCTGAAGCGCCTGACCGCCGAGGAGCTATCGGGCACCCTCAAGCTGCTGTTCATTTCCGTGGTCCTGCTGCCGGTGCTGCCCAACCAGGGCTATGGTCCCTGGGCGTTCTTCAATCCCTACCTGACCTGGTGGATGGTGGTGCTGATCGCCGCCCTCGGTTTCTCCGCCTACCTGGCCATCCGCCTGATCGGCTCGCGCAAGGGCCTGTTGCTGACCGCGGTGCTCGGCGGCCTGGTGTCCTCCACGGTGATGACCCTGACCCTGGCGCGCCTGCGCGAGCGCATGCCCGACGCCCTGTTGGCGTGCGCCCTGCTGGCGACCTCGGCGCTGATGTTCCCGCGCATCCTCGTCGAGATCGGCGCGATCCACCCGGCCTTGCTGAAGGAACTGGCCCTGCCATTCGCCGCCACCACCCTCGTCTACCTTGGCGGCACGCTGTTCCACGCCCTGCGCGGCGGCCGCGCCAGCCAGGAGGCGCCCGACGAGCCAGGCCTGCGCAACCCCTTCGAACTGCTCCCGGCCCTGCGCTTCGCCGCCCTGCTGAGCGCGATCCTGCTGTTGGTGGAGGTCGGCCGGCGGCTGTTCGGCGATGCCGGCATCTACGCGGTCGCGCTGCTCTCCGGCCTCGCCGACGTCGACGCGATCACCCTGTCCCTGGCCCGCGCGGCGCAGGGCGAACTCGATCCAGGCGTGGCCAGCCGCGGCATCGCCCTTGCCGCCCTGAGCAACAGCCTGGTCAAGGCCGGCCTGGTCGTGCTGGTGGGCGGCAAGCGGCTGGCCCTGCAAACGCTACCCTTCAGCCTGGCGGGGCTGCTGGTAGGAGCGCTGCTGATCCTGCTGTGA,MGYWRQRRALGGRRTAVRAPRGRLLLWCAQARRHPLSRRMESSMTLSLDLLLSLCTALAIGLLIGAERGWQERDHEDARQIAGIRTFSLAGLLGGFATLLAGELGSAVWVALLLALAALAVAGYVSDVRRGGDQGMTTEIALLMTFLLGSLALTEQRLLAAAGGIVLTLLLSLKDKLHALLKRLTAEELSGTLKLLFISVVLLPVLPNQGYGPWAFFNPYLTWWMVVLIAALGFSAYLAIRLIGSRKGLLLTAVLGGLVSSTVMTLTLARLRERMPDALLACALLATSALMFPRILVEIGAIHPALLKELALPFAATTLVYLGGTLFHALRGGRASQEAPDEPGLRNPFELLPALRFAALLSAILLLVEVGRRLFGDAGIYAVALLSGLADVDAITLSLARAAQGELDPGVASRGIALAALSNSLVKAGLVVLVGGKRLALQTLPFSLAGLLVGALLILL,,15687295 ; ,,58% similar to hypothetical protein [Methanobacterium thermoautotrophicum] ; ,11 predicted transmembrane helices ; 13 predicted transmembrane helices (TMHMM v.2.0) ; At least one transmembrane helix predicted by Phobius ; ,,,Membrane proteins ; Hypothetical, unclassified, unknown ; ,Cytoplasmic Membrane,Class 3,,,,,,,,,,,,COG3174 ,COG3174, Predicted membrane protein [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0044,,15595242,Protein,58786,60159,exoT,,exoenzyme T,,Class 1,ATGCATATTCAATCATCTCAGCAGAACCCGTCTTTCGTGGCTGAGTTGAGCCAGGCCGTGGCCGGGCGCCTGGGACAGGTCGAGGCCCGCCAGGTGGCCACTCCCCGGGAGGCGCAACAACTGGCCCAGCGCCAGGAAGCACCGAAGGGCGAGGGCCTGCTCTCCCGCCTGGGGGCTGCCCTCGCGCGTCCCTTCGTGGCGATCATCGAGTGGCTGGGCAAACTGCTGGGGAGCCGTGCCCACGCCGCCACCCAGGCGCCGCTCTCCCGTCAGGACGCGCCGCCTGCCGCCAGTCTCTCTGCCGCCGAGATCAAGCAGATGATGCTGCAAAAGGCACTGCCCCTGACCTTGGGCGGACTTGGCAAGGCGAGCGAGCTGGCGACTTTGACAGCGGAGAGGCTGGCGAAGGATCACACGCGCCTGGCCAGCGGCGACGGCGCTCTGCGATCGCTGGCCACCGCCCTGGTCGGGATTCGCGATGGCAGCCGGATCGAGGCTTCCCGTACCCAGGCTGCCCGCCTGCTCGAACAGAGCGTTGGGGGGATCGCGCTGCAACAGTGGGGGACCGCGGGCGGTGCCGCCAGCCAGCATGTACTCAGCGCAAGCCCGGAGCAACTGCGCGAAATCGCCGTCCAACTGCATGCGGTAATGGACAAGGTCGCCCTGTTGCGCCACGCGGTAGAGAGCGAGGTAAAGGGCGAGCCTGTCGACAAGGCGCTGGCGGATGGCCTGGTGGAGCACTTCGGGCTGGAGGCGGAGCAGTACCTCGGCGAACACCCGGACGGGCCGTACAGCGATGCCGAGGTGATGGCGCTCGGTCTCTATACCAACGGCGAGTACCAGCACCTGAATCGGTCCCTGCGTCAGGGACGGGAGCTGGATGCGGGCCAGGCGTTGATCGACCGGGGCATGTCTGCCGCGTTCGAAAAGAGCGGACCGGCTGAACAGGTCGTGAAGACCTTCCGCGGCACCCAGGGCAGGGATGCCTTCGAGGCGGTGAAAGAGGGCCAGGTCGGCCACGACGCCGGCTATCTCTCCACCTCCCGGGACCCCGGCGTTGCCAGGAGCTTCGCGGGCCAGGGCACGATAACCACCCTGTTCGGCAGATCCGGGATCGATGTCAGCGAGATATCGATCGAGGGCGATGAGCAGGAGATCCTCTACGACAAGGGGACCGACATGCGCGTGCTTCTCAGTGCCAAGGATGGGCAGGGTGTGACCCGTCGGGTGCTCGAAGAGGCCACGCTGGGGGAACGGAGCGGCCACGGCGAGGGACTGCTCGATGCCCTGGACCTGGCAACCGGGACGGATCGTTCAGGCAAGCCCCAGGAACAGGACCTGCGCCTGAGAATGCGCGGCCTCGACCTGGCCTGA,MHIQSSQQNPSFVAELSQAVAGRLGQVEARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLGSRAHAATQAPLSRQDAPPAASLSAAEIKQMMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRDGSRIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAVMDKVALLRHAVESEVKGEPVDKALADGLVEHFGLEAEQYLGEHPDGPYSDAEVMALGLYTNGEYQHLNRSLRQGRELDAGQALIDRGMSAAFEKSGPAEQVVKTFRGTQGRDAFEAVKEGQVGHDAGYLSTSRDPGVARSFAGQGTITTLFGRSGIDVSEISIEGDEQEILYDKGTDMRVLLSAKDGQGVTRRVLEEATLGERSGHGEGLLDALDLATGTDRSGKPQEQDLRLRMRGLDLA,,8631719 ; 9371466 ; ,,99% similar to ADP-ribosyltransferase (exoenzyme 53) [Pseudomonas aeruginosa] ; ,,Type III Secretion ; ,2.4.2.- ;,Secreted Factors (toxins, enzymes, alginate) ; ,Extracellular,Class 1,,,,,,,,,,PF03545 PF03496 PF01129 ,YopE, Yersinia virulence determinant (YopE).. Binary_toxA, Clostridial binary toxin A.. ART, NAD:arginine ADP-ribosyltransferase.. ,COG5585 ,COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal transduction mechanisms]. ,Signal transduction mechanisms 
NC_002516,Chromosome,PA0045,,15595243,Protein,60656,61342,,,hypothetical protein,,Class 4,ATGAGTCACAGCGCCAAGAAAGCACTACTGCCGCTCCTCGCCGTCGCCACCCTGGCCGGCCTGGCGGGCTGCGCCACCGAGACCTCCACCGCGTTGCCGGTACAGCAGGTCGAGAGCGTCAACCGACCATACAGCGGCGTGCGTTCGCCGATTGCGGTAGGCAAGTTCGACAACCGCTCCAGCTACATGCGCGGGATCTTTTCCGATGGCGTCGACCGCCTCGGCGGCCAGGCCAAGACCATTCTCATCACCCACCTGCAGCAGACCAATCGCTTCAACGTGCTGGACCGCGACAACATGAGCGAGATCCAGCAGGAAGCGGCGATCAAGGGCCAGGCCCAGCGCCTGAAGGGTGCCGACTACGTGGTGACCGGCGACGTCACCGAGTTCGGCCGCAAGGAAGTCGGCGACCGCCAGCTGTTTGGCATCCTCGGCCGCGGCAAGTCGCAGATCGCCTACGCCAAGGTGGCGCTGAACATCGTCAACATCTCTACCTCGGAGGTCGTCTATTCGACCCAGGGCGCTGGCGAGTACGCCCTGTCCAACCGCGAGGTGATCGGCTTCGGCGGCACCGCCAGCTACGACTCGACCCTCAACGGCAAGGTTCTCGACCTGGCCATGCGCGAGGCGGTGAACAAGTTGGTCAACGCGGTCGATAGCGGCGCCTGGAAGCCACAGAACCAATAA,MSHSAKKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPYSGVRSPIAVGKFDNRSSYMRGIFSDGVDRLGGQAKTILITHLQQTNRFNVLDRDNMSEIQQEAAIKGQAQRLKGADYVVTGDVTEFGRKEVGDRQLFGILGRGKSQIAYAKVALNIVNISTSEVVYSTQGAGEYALSNREVIGFGGTASYDSTLNGKVLDLAMREAVNKLVNAVDSGAWKPQNQ,,15687295 ; ,,,PSORT predicted lipoprotein ; Type II (lipoprotein) export signal predicted by LipoP (cleavage after residue 23) ; Export across inner membrane confirmed by PhoA fusion screen ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF03783 ,CsgG, Curli production assembly/transport component CsgG. CsgG is an outer membrane-located lipoprotein that is highly resistant to protease digestion. During curli assembly, an adhesive surface fibre, CsgG is required to maintain the stability of CsgA and CsgB.. ,COG1462 ,CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]. ,Cell envelope biogenesis, outer membrane 
NC_002516,Chromosome,PA0046,,15595244,Protein,61373,61726,,,hypothetical protein,,Class 4,ATGAGCAAGACGATCACATGGACGGCGGCGCTGCTGGGGAGCATGGCGCTGGCCGGGTGCAGCGGACCGAAGACGCTGTACCAGTGGGAGGGCTACCAGGCCCAGGTCCACGAATACTTCAAGGGTGAATCCAAGGAGGCCCAGGCGCAGGCGCTGGAAGCCGACCTCGAGAAGATCCGGGCGAAGAACGGCGCGGTGCCGCCGGGCTACCACGCCCAGCTGGGGCTGCTCTATTCCAGCATCGGCAAGGACGACCAGATGGTCCGCGAGTTCGAGACCGAGAAGGCGCTGTTTCCCGAGTCGGCGACCTACATGGACTTCCTCCTGAACAACGCCCGTGGAGGTGCCCGTTGA,MSKTITWTAALLGSMALAGCSGPKTLYQWEGYQAQVHEYFKGESKEAQAQALEADLEKIRAKNGAVPPGYHAQLGLLYSSIGKDDQMVREFETEKALFPESATYMDFLLNNARGGAR,,15687295 ; ,,,PSORT predicted lipoprotein ; Type II (lipoprotein) export signal predicted by LipoP (cleavage after residue 19) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,COG4259 ,COG4259, Uncharacterized protein conserved in bacteria [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0047,,15595245,Protein,61879,62388,,,hypothetical protein,,Class 4,GTGAAGGCGACCTACAGCATGCTCTCGCAGGTCACCTTCCCGCTGGCCGAGGCCGGCTACTACGTGGTGCCGGTGGCGCTGGCCGACGAGACCTTCCGCCAGAACGGCCTGACCAGCGCCGGCGACGTGCACCAGGTGTCCCCGGCCAAGCTGCGCGAGATCTATGGCGCCGACGCGGCGCTGTACGTCACGGTGAGCGACTACGGCACGCGCTACATGGTGATCAGCAGCGCGACCATCGTCACCGCCAGCGCCAAGCTGGTCGACCTGCGATCCGGCACCACCCTGTGGACCGGCTCGGCGACCGCCTCCAGCGAGGAAGGCAACGGCGGCAACAACGGCGGCCTGGTGGGCATGCTGATCACCGCGGCGGTCAAGCAGATCATCAACAGTTCGGTGGAGGACGCCGGTTATCCGATCGCCGGGATGACCAGTGCGCGCCTGCTCTCGGCCGGCCAGCCGGGCGGACTGTTGTACGGCCCCCGCTCGCCGAGGTACGGCAGCGACTGA,MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD,,,,,,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF05643 ,DUF799, Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.. ,COG4380 ,COG4380, Uncharacterized protein conserved in bacteria [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0048,,15595246,Protein,62786,62403,,,probable transcriptional regulator,,Class 3,ATGAGCTTCGCGCAGAATCTCCTACGCCTACGCCAGCAGAACGCCCTGACCCAACGGCAGATGGCCGAGCGACTGGGCATCACCGTGAGCCAGTTGCGGCACTTCGAAACCAAGGGCGGGCACCCGTCGCTGGTGGTGCTGCAAACCATCGCCGGACGTTTCGCGGTGCCCCTCGACTGGCTGGTCTGCGAGCGCAGCGAGCGGCAGGCGCTACCGGAAGACCTGCGCCTGCAGTTCGAGGCCATCGGCCGCCTGCGGCTGGACGAGCGGCGCGCCATCCGGGCGTTGCTCGACGACCTGATCCGCCAGTACATGGCCAAGCGCAACGCAGCGGCCAAGCCCCTCCCGGCGGCTTGCGCCGAGGCCACGGAAACGTCCCCGTAG,MSFAQNLLRLRQQNALTQRQMAERLGITVSQLRHFETKGGHPSLVVLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIRQYMAKRNAAAKPLPAACAEATETSP,,,,55% similar to a region of TrbA [plasmid RK2, Escherichia coli] ; ,PF01381: Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI ; ,,,Transcriptional regulators ; ,Cytoplasmic,Class 3,,,,,,,,,,PF01381 ,HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.. ,,,
NC_002516,Chromosome,PA0049,,15595247,Protein,64729,63068,,,hypothetical protein,,Class 4,ATGCGCTACGCCCGTCACGCAAGCCGATACTCCCTCTTCACCCTGGCCGTCTCGGCAGCCCTGCTGCCCGGCGCCGGCTGGGCCGCCAACGGCGACCTCGCCGGCGCCCGCAAGCCGCCCAGCGTCGCCTGCTCCTGGAACCGCGAGGCAGCGTTGTCCTACGAGGAGCGCCGGCTCGACACGCCGCTGCCGTTCAGCGGCGCCAACGTCGTCACCCATGACCAGACGCCGCTGGCCGAGCGCATCGTCAAGGGCGCCGGCTTCGACGGCTTCGAACCGGCCTTCGCCAAGCGCCTGTGCGCCGCCGACGGCCGCACCCCGGTCACCAGCTACGCCAAGGCACTGAAGCTGGTCACCGAAGAGGGCCGCGCGCTGTGGCGCGCCGCCGTCGACCGGGCCCAGGGTCGCCGCGCCATTCCCGCCGGCGCGCTGCCGGCCAGCGATGACCGCATGCTCTACTGGACGCGCCTCTACATGACCCGCACCCTGCGCCAGTGGGCGCCATCCTTCCACCTCGGCAAGGCCCAGGCCCAGGCACTGCAATGGCGCTTCGAACGCGCCTCGCGCGGACAGCTGGACATCGACCTGCCACGCCGCTACGCCGCCGACGGCTCGCGCTACCGGCGGATGATCATCAGCGGCTTCGACGTCTTCACCCTGGGCACTCCCGGGACGGCGAACACCGGCCTGCGCAACGGCAACCCCTCGGGCGCCACCGCCCTTGCGCTGGACGGCCGCGAGTTCAGGCTGGCCGACGGCAGCCTGCTGCGTATCGAGGCCTACCTGTTGCCGGTCAGCTACGACCCGTTCAACCGCGGCATGCAGGAAGACACCCTGGGCCCCTGGTTCCGCCCCGGCCCGCGCCGGGTCGACGCCTCCATCACCATCAGCCAGGGCGGCGCCAACCAGTTCTGGCTGGAGGCCTGGAACGGCCGCTTCCACGGCTCCTCCGCCGGCAACGACGGCATCGTCTACTGCCCCGCCGACAGCGCTTTGCCCAACTACGTGCTTCCCCTGGGCAGCGTGACCAATCCCGGCACCGCGCCGATTTCCCTGCGGGGCTCCGGCTGCAATATCAACCCGCCGCGCCGCTGGCTCGGCTACGACAGCGCCAGCCGCTGGCGGCAGAACCTGCCGGCACAGTTCTCCAAGGCCTCGCTGCCGGTCCGCCAGTTGCTCGCCGCCGATACTTGGCGCGGCATCGAGCGGCCGCCGGGCGCTACCAGCCAGGCCGCGGAAGGCTTCGACGTCACCTGGCACACCAACTACGACTTCTTCCCCGATTGCGCCAACCCGCGCACCGAAAACGTGCCGACCAACGGAGTGATGAACGCCATGCCCGATCCCTCCCTGGTGCTCCCGCCGAACCGACGGATCTGCGCGCGCAACGGCGGTGGCGGCGACTACCTGTCCAACGAGAGCGCCTACCGCAACACGGTGCTGCGCGACGCGTTCCGCCTGGAGATTCCCGCCGGGCACATCCATGTCCCGGTGATGAACAACTACTACACCGGCGTACCGGCGAGCGGCGGCGGCGCGCGCAACGACAACGCCATCAGCGACGCCCGCTACGAGGCCTACCGCAGCGCCATCGTGGCGCAGACCCGGGCGCTGCTGGTGGGCGTCGGCAACGCCCTGGCGCAGGGGGCGCAAGCGGACTAG,MRYARHASRYSLFTLAVSAALLPGAGWAANGDLAGARKPPSVACSWNREAALSYEERRLDTPLPFSGANVVTHDQTPLAERIVKGAGFDGFEPAFAKRLCAADGRTPVTSYAKALKLVTEEGRALWRAAVDRAQGRRAIPAGALPASDDRMLYWTRLYMTRTLRQWAPSFHLGKAQAQALQWRFERASRGQLDIDLPRRYAADGSRYRRMIISGFDVFTLGTPGTANTGLRNGNPSGATALALDGREFRLADGSLLRIEAYLLPVSYDPFNRGMQEDTLGPWFRPGPRRVDASITISQGGANQFWLEAWNGRFHGSSAGNDGIVYCPADSALPNYVLPLGSVTNPGTAPISLRGSGCNINPPRRWLGYDSASRWRQNLPAQFSKASLPVRQLLAADTWRGIERPPGATSQAAEGFDVTWHTNYDFFPDCANPRTENVPTNGVMNAMPDPSLVLPPNRRICARNGGGGDYLSNESAYRNTVLRDAFRLEIPAGHIHVPVMNNYYTGVPASGGGARNDNAISDARYEAYRSAIVAQTRALLVGVGNALAQGAQAD,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 28) ; type I export signal computationally predicted by Phobius (cleavage after residue 28) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 28) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0050,,15595248,Protein,65339,65479,,,hypothetical protein,,Class 4,ATGAAAAGGAAGATGCTGGCGGCTTCGCTGCTGCTGTGGATGTTCTCGCTGACGGCGCAGGCGGACTGCGCGGTGCTCGGGCCGGGGGAAGATCCCTGCGCGGGCCCGGTGCTGGGACCGACCGTCTGCGAGTGCCCGTGA,MKRKMLAASLLLWMFSLTAQADCAVLGPGEDPCAGPVLGPTVCECP,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 21) ; type I export signal computationally predicted by Phobius (cleavage after residue 21) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 21) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,,,
NC_002516,Chromosome,PA0051,,15595249,Protein,66303,68135,phzH,,potential phenazine-modifying enzyme,probable glutamine amidotransferase ;,Class 2,ATGTGCGGTCTCGCGGGTTGGGTGGATTACACGCGCAAGCTCGACGACGAATTTCCGGCGATCTTCGCCATGACCGATACGCTCGCCTTGCGCGGGCCGGATGCCGAGGGCATCTGGAAGCACCGCAACGCCCTGCTGGGTCACCGGCGGCTGGCGGTCATCGACCTCAGCGGCGGCGTGCAGCCGATGTCCTATCGCTTTCCCACCGGCCAGGAGGTCACCCTCGTCTACACCGGCGAGGTGTACAACCACGATGCCCTGCGCGAGCGGTTGCGCCGGGCCGGACATGAGTTCCGCACCCGCAGCGATACCGAGGTGGTCCTGCACGCCTATCTGCAATGGGGCGAGCGTTGTTGCGAGTACCTGACCGGGATGTTCGCCTTCGCCGTCTTCGATGGCCGCGACGGCCACCTGCTGCTGGTGCGCGACCGCCTGGGCATCAAGCCGCTGTATTACGCGCGGCACCGCGAGGGACTGCTGTTCGGCTCGGAGATCAAGTCCATCCTGGCGCATCCGGAATTCGCCGCCAGGCTCGACGCGGTCGGCCTGGTCGACCTCCTGACGCTGTCCCGGGGCACTTCGCAGACGCCGTTCCGCGAGGTCCAGGAACTGCTGCCCGGCCACCTGCTGTCCTGGCGTCCCAATTCCCAGGCGAAGTTGCGCCGCTACTGGGAGGTGCGCCGCCAGGAGCATGCCGACGACCTGCAGAGCACCGTGCAGCGCACCCGCGAACTGGTCACCCGCGCCCTGGGGGCGCAATTGCACGCCGACGTTCCGGTGTGTTCGCTGCTATCGGGTGGGCTCGATTCGACCGCCCTGACCGGCATCGCCCAGCGCATCGCGAAGGCGGAGCACGGCGGCGACATCAATTCGTTCTCGGTGGACTTCGTCGGCCAGGCCGAGCAGTTCCGCAGCGACGACCTGCGTCCCGACCAGGACCAGCCGTTCGCCCTGCTGGCCGCGCAGTACATCGGCAGCCGTCATCGCACCGTGCTCATCGACAATGCCGAACTGGTCTGCGAACGAGCGCGCGAAGAGGTATTCCGGGCCAAGGACGTACCTTTCACCTTCGGCGACATGGATACCTCGCTGCACCTGATGTTCGGCGAGATCCGCCGGCATTCCACGGTGGCCATCTCCGGTGAAGGCGCCGACGAGCTGTTCGGTGGCTACGGCTGGTTCCGCGATCCGCAGGCGGTGGCTGCGGCGCGCTTCCCCTGGGCCTCCAGGGTGCGCCTGCCGGCCGGCTTCATCGACGCCGGTTTCAACCGCCGCTGCGATCTCCTCCAGTACCAGCAGGCCAGCTACGACGATGGGCTGCGCCAGGTCGAACACCTGGCCGGCGACAGCCCGGAGGAGCGGCGGATGCGCGAGTTCAGCCACCTGCATCTGAAGCGCTGGATGGTGCTGCTGCTCGAACGCAAGGATCGCCTGAGCATGTGCAACGGCCTGGAGGTGCGGGTGCCCTACACCGACCATGAGCTGGTGGAGTACGTCTACAACGTGCCCTGGTCGATCAAGAGCCGGGACGGCGAGGAGAAGTGGCTGCTCAAGCGGGCCTGCGCCGACTATGTCCCGGAAGCCGTGCTCAAGCGCCGCAAGAGCCCTTATCCGACTTCTGCCAACCTCGGCTACGAGCGTTTCCTGCGCGGGAGCGTGCGGCGCCTGCTGGAGGACGCGGTGAACCCGGTGTTCGGCATCGTTTCGCGAGAGTTCCTGGCCGCCGAACTGGAGCATCCGGAGGGGTACTTCAACACCCAGGTGAGCCGCCACAACCTGGAGACCGCACTGGCGCTGGAAGGCTGGCTCAGGTTGTACGGGCTCTCCGCCTGA,MCGLAGWVDYTRKLDDEFPAIFAMTDTLALRGPDAEGIWKHRNALLGHRRLAVIDLSGGVQPMSYRFPTGQEVTLVYTGEVYNHDALRERLRRAGHEFRTRSDTEVVLHAYLQWGERCCEYLTGMFAFAVFDGRDGHLLLVRDRLGIKPLYYARHREGLLFGSEIKSILAHPEFAARLDAVGLVDLLTLSRGTSQTPFREVQELLPGHLLSWRPNSQAKLRRYWEVRRQEHADDLQSTVQRTRELVTRALGAQLHADVPVCSLLSGGLDSTALTGIAQRIAKAEHGGDINSFSVDFVGQAEQFRSDDLRPDQDQPFALLAAQYIGSRHRTVLIDNAELVCERAREEVFRAKDVPFTFGDMDTSLHLMFGEIRRHSTVAISGEGADELFGGYGWFRDPQAVAAARFPWASRVRLPAGFIDAGFNRRCDLLQYQQASYDDGLRQVEHLAGDSPEERRMREFSHLHLKRWMVLLLERKDRLSMCNGLEVRVPYTDHELVEYVYNVPWSIKSRDGEEKWLLKRACADYVPEAVLKRRKSPYPTSANLGYERFLRGSVRRLLEDAVNPVFGIVSREFLAAELEHPEGYFNTQVSRHNLETALALEGWLRLYGLSA,,11591691 ; ,,80.3% identity to phzH[P. chlororaphis PCL1391] ; 59% similar to putative asparagine synthetase YucB [Bacillus subtilis] ; ,2 Pfam protein motifs: glutamine amidotransferase class II signature(residues 43 to 153), asparagine synthetase signature (residues 199 to 608) ; PS00443: Glutamine amidotransferases class-II active site ; ,Phenazine biosynthesis ; ,,Putative enzymes ; ,Cytoplasmic,Class 3,GO:0006529 ;GO:0004066 ;,TIGR01536 ,asn_synth_AEB ,asparagine synthase (glutamine-hydrolyzing) ,equivalog ,3.40E-278 ,6.3.5.4 ,Amino acid biosynthesis ,Aspartate family ,PF00733 PF00310 ,Asn_synthase, Asparagine synthase. This family is always found associated with pfam00310. Members of this family catalyse the conversion of aspartate to asparagine.. GATase_2, Glutamine amidotransferases class-II.. ,COG0367 ,AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]. ,Amino acid transport and metabolism 
NC_002516,Chromosome,PA0052,,15595250,Protein,68616,68188,,,hypothetical protein,,Class 4,ATGGACCTTCGCCCCAGCCACGTGCATGTGTTCCCACCCAGCCGCGACCTCCCGGCCGCAACCAGTCCGCACCGCGAAACCCTGCTGCGCAGCGGCTGCGCCTGGAACGGCTCGCTCTACCTCGGCTATCCCCTCGGCCAGCCGCAGCTCACCGTGCAGCGCCTGAGCCTGGCCGCCCACGAACGCCTGGACTGGCAGGTCCATCCGATGCCCAGCGCGCTCTACGTGCTCAAGGGCGAACTGCGCCTGGAGACCCGCGACGGTGCCCAGAGCACCCGGGTGCTGGAAGGCGAGGCGGCGGGTTGCCTGATGAACATCATCCATCGCCTGATAGCCGGGGCCGAACCGGTGGAAGCCCTGCTGTTCCATGCCGGCGTGGAAGGCATGCCGGTGGGGCTCGGCGAACGCGGCGAAATGCCCGACGCCTGA,MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHRLIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA,,,,55% similar to hypothetical protein [Synechocystis sp.] ; ,,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,,,,,,,,,,,,COG1917 ,COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0053,,15595251,Protein,69272,69526,,,hypothetical protein,,Class 4,ATGAACCACTGCTTTGCCAATGGCAACAAACGCACGGCGGCGGCGGCCGCTACGGTTTTCCTCCTGCTCAATGGCATAGAGCTGACGGGGCCCGCTCAGGACTTCGTCGACATCATGGTCGCCCTCGTGACTCGTGAAGCGAGCGTTCAGGACCTGGAAGACTGGATGTTCTACTGGCACAGACCATTCGACGCTTACAACCTGCCGGACAGCGACGCTTTCGAGCGAATGGTCGCCCGCTTGGGCATTGGTTAG,MNHCFANGNKRTAAAAATVFLLLNGIELTGPAQDFVDIMVALVTREASVQDLEDWMFYWHRPFDAYNLPDSDAFERMVARLGIG,,,,,,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF05012 ,DOC, Prophage maintenance system killer protein. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family.. ,COG3654 ,Doc, Prophage maintenance system killer protein [General function prediction only]. ,General function prediction only 
NC_002516,Chromosome,PA0054,,15595252,Protein,70091,69543,,yjiI ;,conserved hypothetical protein,,Class 4,ATGGATCGGAAAACCCTCGACGACACCAGCAAGTTCCTCAGCTATGTCCTTCGCCACCAGCCCGAGGCCATCGGCCTGACGCTGGACGGCGAAGGCTGGGCCGACATCGACGCCCTGATCGCCGGCGCGGCGCGGGACGGCCGCGCCCTCGACCGCATGCTGCTCGGCGCGGTGGTCGAGAACAACGACAAGAAGCGCTTCGCCCTCTCCGCCGATGGCCAGCGCATCCGCGCCGTGCAAGGCCACTCGCATGCCGCGGTGGCCATCGCCTACGCCCCCGCGGTCCCGCCCGCAGTGCTCTACCACGGCACCGCCAGCCGCTTCCTCGACTCCATCCGCGAGCGCGGCCTGGTTCCCGGCAGCCGCCACCACGTCCATCTCTCCGCCCGCCGCGCCACCGCCCTGGAAGTCGGCCGCCGCTACGGCAGCCCGGTTCTGCTGGAAATCGACGCGCGCGACATGCATCTGGCCGGGCACCTATTCCACCAGGCGGAGAACGGCGTCTGGCTGACCGAGCGGGTACCCGTGCGGTTCATCCGCGAGGCTTGA,MDRKTLDDTSKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAARDGRALDRMLLGAVVENNDKKRFALSADGQRIRAVQGHSHAAVAIAYAPAVPPAVLYHGTASRFLDSIRERGLVPGSRHHVHLSARRATALEVGRRYGSPVLLEIDARDMHLAGHLFHQAENGVWLTERVPVRFIREA,,,,74% similar to hypothetical protein YjiI [Escherichia coli] ; ,,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,,,,,,,,,,PF01885 ,PTS_2-RNA, RNA 2'-phosphotransferase, Tpt1 / KptA family. Tpt1 catalyses the last step of tRNA splicing in yeast. It transfers the splice junction 2'-phosphate from ligated tRNA to NAD, to produce ADP-ribose 1"-2"-cyclic phosphate. This is presumed to be followed by a transesterification step to release the RNA. The first step of this reaction is similar to that catalysed by some bacterial toxins. E. coli KptA and mouse Tpt1 are likely to use the same reaction mechanism.. ,COG1859 ,KptA, RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]. ,Translation, ribosomal structure and biogenesis 
NC_002516,Chromosome,PA0055,,15595253,Protein,70636,70130,,,hypothetical protein,,Class 4,ATGTCCCTGTCGATCTACCAGGCTTCGATCCCGACCTTCCTGCGCACCCTCGGCAACCTCTCGGCGATCCTGAAGAAAGCCGCCGCCCACGCCGAAGCGAAGAACATCGATCCGCGCATCTTCATCGACGCCCGGCTGGCGCCGGACATGTTCCCCCTGGCGCGCCAGGTGCAGATCGCCAGCGACGCCGCCAAGGGCGCCGGCGCGCGGCTGGCCGGGCTGGAAGTGCCGAGCTACGCGGATACGGAAACCACCTTCGACGAACTCCAGGCACGCATCGCTCGCACCGTCGAGTTCCTCGAGGGCATCCGCGAGGAACAACTGGACGGCGCCGAAGAGCGCAACGTGACCCTCAAGGTGCGCGGCCAGGAGATCAGCTTCAACGGCCGCGACTTCCTCTTCGGCTTCGCCCTGCCCAACTTCTTCTTCCACGTCACCACCGCCTACGCCATCCTCCGCCACAACGGCGTCGAACTGGGCAAGATGGACTTCCTCGGCGGCGCCTGA,MSLSIYQASIPTFLRTLGNLSAILKKAAAHAEAKNIDPRIFIDARLAPDMFPLARQVQIASDAAKGAGARLAGLEVPSYADTETTFDELQARIARTVEFLEGIREEQLDGAEERNVTLKVRGQEISFNGRDFLFGFALPNFFFHVTTAYAILRHNGVELGKMDFLGGA,,15687295 ; ,,,0 predicted transmembrane helices (TMHMM v.2.0) ; At least one transmembrane helix predicted by Phobius ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,,,COG3812 ,COG3812, Uncharacterized protein conserved in bacteria [Function unknown]. ,Function unknown 
NC_002516,Chromosome,PA0056,,15595254,Protein,71622,70702,,,probable transcriptional regulator,,Class 3,ATGGACCGCCTGACCGCCACTCGCGTCTTCGTCGAAGTCATCGACAGCGGCAGCCAGACCGCCGCCGCCGAGCGTCTGGACATGTCCCGGGCGATGGTCTCGCGCTACCTCGCCGAGTTGGAGGAGTGGGTCGGCGCACGCCTGCTGCACCGCAGCACCCGCCGCCTGAGCCTGACCGACGCCGGCGCGGAGCTGTTGCCGCAGTGCCGCGAGATGCTCGCCGTGGCCGACGCCATGCAGGCCACCGGCCAGACCCGCCGCGACAGCCCGCGCGGCACTCTGCGCATCACCAGCAGCCTGTCCTTCGCCCAGGCCTGGCTGACCCGTGCCGCCGCCGCCTTCGTCGAGCGCTACCCGGGCACCGCCATCGACCTGCAGGTCAACAGCCAGGTGGTCAACCTGGTGGAGGAGCGCATCGACCTGGCCCTGCGCATCGCCAACCAGCTCGACCCCAACCTGATCGCCCGCCGCCTCGGCGAATGCCGCTCGGTGATCTGCGCCGCGCCGGACTACCTGCGCCGCCACGGCACCCCGCGGCGCCCGGAGGACCTGGCGCTGCACAACTGCCTGACCTACTCCTACTTCGGCCGCAGTCTCTGGCAGTTCGAGCGCGACGGCGAGCCGACCAGCGTGCCGGTGGGTGGCAGTCTCAGCGCCAACGAATCCACCGTGCTGCTGGAGGCCGCCGCCGCCGGTGCCGGGATCAGCCAGCAGCCGCTGTACTCGGCAGCCCCGCTGATCCGTAGCGGACGCCTGGTGGCGCTGCTGCCGGAGTGGTCGCCGCAGGTGCTCGGCATCCACGCGGTGTACGCCTCGCGCCGGCAGATGCCGCCGGCGCTGCGGGCGCTGCTGGACTTCCTGGTCGAACGGATGGCGGCCGATCCGCACTGGGACGAGGCGGGCCCCCTGGCGCTGGCGTGA,MDRLTATRVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWVGARLLHRSTRRLSLTDAGAELLPQCREMLAVADAMQATGQTRRDSPRGTLRITSSLSFAQAWLTRAAAAFVERYPGTAIDLQVNSQVVNLVEERIDLALRIANQLDPNLIARRLGECRSVICAAPDYLRRHGTPRRPEDLALHNCLTYSYFGRSLWQFERDGEPTSVPVGGSLSANESTVLLEAAAAGAGISQQPLYSAAPLIRSGRLVALLPEWSPQVLGIHAVYASRRQMPPALRALLDFLVERMAADPHWDEAGPLALA,,,,55% similar to regulator GstR [Rhizobium leguminosarum] ; ,PS00044: Bacterial regulatory proteins, lysR family signature ; ,,,Transcriptional regulators ; ,Cytoplasmic,Class 3,,TIGR02036 ,dsdC ,D-serine deaminase transcriptional activator ,equivalog ,6.60E-06 ,No Data ,Regulatory functions ,DNA interactions ,PF03466 PF00126 ,LysR_substrate, LysR substrate binding domain. The structure of this domain is known and is similar to the periplasmic binding proteins.. HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.. ,COG0583 ,LysR, Transcriptional regulator [Transcription]. ,Transcription 
NC_002516,Chromosome,PA0057,,15595255,Protein,71730,72617,,,hypothetical protein,,Class 4,ATGTCGCGCCATGGATTGCTTCGTTCCCTGTTCGCCGCCGCCGCCCTGCTGGGGGCCGCCGGCGTCTTCGCCGCCAGCGCCGAACCGCTGCGGCTGGAGGTCTACAACCCCGGCGAGAAGGCGATCTTCGCCGTGTCCTCGGAACTGCTGGTGGGCCAGCGCGAGGCGATGCTGATCGACGCGCAGTTCTCCCGCGCCGACGCCGAGCAACTGGTCAAGCGTATCCAGGCCAGCGGCAAGACCCTCAGCACTATCTACATCAGCCACGGCGACCCGGACTTCTACTTCGGCCTCGACGTGCTGAAGGCCGCCTTCCCCGAGGCGAAGATCCTCGCGACGGCGCAGACCGTCGCACACATCCAGGCGACCAAGGACGCCAAGCTGGCCTACTGGGGGCCGATCCTCAAGGACAACGCGCCGACGTCGCTGGTGGTGCCGGAGCCGCTGAAGGGCGACCAGTTGAAGCTGGAAGGCCATGCCCTGAAGGTGGTCGACCTGAAGGGGCCGAGCCCGGACCGCACGGTGCTGTGGATTCCGTCGCTGAAGACGGTGGTTGGTGGCGTGCTGGTGGAATCCGGTTCGCACGTCTGGACCGCCGATACCCAGACCCAGGCCTCGCGCCAGGCCTGGGTGGCGATGCTCGACCGGATCGAGGCGCTGCAACCGCGGCGCGTGGTGCCCGGCCATTTCACCGGCGAGGAGCCGAAGGGCCTGGACGGCGTGCGCTTCACCCGTGACTACCTGAAGGCCCTGGAAGCCGAACTGCCCAAGGCCAGGGATTCCGCCGCGCTGGTCGAGGCGATGAAGCGCCGCTACCCGAACCTGCCGGGCGAGGAAGGCCTGGAGCTGAGCGCCAAGGTGCTCAAGGGCGAGATGCAGTGGCCCTGA,MSRHGLLRSLFAAAALLGAAGVFAASAEPLRLEVYNPGEKAIFAVSSELLVGQREAMLIDAQFSRADAEQLVKRIQASGKTLSTIYISHGDPDFYFGLDVLKAAFPEAKILATAQTVAHIQATKDAKLAYWGPILKDNAPTSLVVPEPLKGDQLKLEGHALKVVDLKGPSPDRTVLWIPSLKTVVGGVLVESGSHVWTADTQTQASRQAWVAMLDRIEALQPRRVVPGHFTGEEPKGLDGVRFTRDYLKALEAELPKARDSAALVEAMKRRYPNLPGEEGLELSAKVLKGEMQWP,,15687295 ; ,,,type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 24) ; type I export signal computationally predicted by Phobius (cleavage after residue 24) ; type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 24) ; ,,,Hypothetical, unclassified, unknown ; ,Unknown,Class 3,,,,,,,,,,PF00753 ,Lactamase_B, Metallo-beta-lactamase superfamily.. ,COG0491 ,GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only]. ,General function prediction only 
NC_002516,Chromosome,PA0058,,15595256,Protein,72680,73384,,,hypothetical protein,,Class 4,ATGAACGACCTCACCCTGCATTACCTCTACGATCCGCTCTGCGGCTGGTGCTACGGCGCCTCGCCGCTGCTCGCCGCCGCCTGCGAGGTGACGGGTCTGGACGTACGCCTGCATGGCGGCGGCATGATGACCGATGCCAACCGCCAGCCGGTCGGCGCCGGTCTGCGCCACTACGTGATGCCCCATGACCTGCGGATCGCCCAACTGACCGGCCAGCCGTTCGGCAAGGACTACTTCGACGGCCTGCTGCGCGACACCAGCGCGGTATTCGACTCGGCCCCGCCGACCGCCGCCGTGCTTGCCGCCGAAGCGCTCGACGGCCTCGGCGCGGCGATGCTGGCGCGGATCCAGCGTGCCCACTACGTCGAGGGCCGGCGTATCGCCGAGCGTCCGGTGCTGCTCGAGCTGGGTGCCGAACTGGGGCTTGGCGAGGGCTTCGCCGAGGCGTTCGACGCCTGCTCCGGCGAGCCGCTGCGCGCGCACTTCGCCGACAGTCGGCGGCTGATGAACCGTCTCGGCGCCGCTGGCTTCCCGACCTTCGCCCTGGAGCGCGACGGCCGCCTGCAGGTGCTCGACACCGGGCGCTACCTCGGCCAGCCGGACGACTGGCGGGCTTTCCTCGAAACGCAGCTGCGCCTTGCCGGCGGCAGCGGTGCCGTGGGCGGGGCCGCGGCGCCGCTCTGCCGCATCGACGGTTGCGCCTGA,MNDLTLHYLYDPLCGWCYGASPLLAAACEVTGLDVRLHGGGMMTDANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAAEALDGLGAAMLARIQRAHYVEGRRIAERPVLLELGAELGLGEGFAEAFDACSGEPLRAHFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSGAVGGAAAPLCRIDGCA,,,,,,,,Hypothetical, unclassified, unknown ; ,Cytoplasmic,Class 3,,,,,,,,,,,,COG3531 ,COG3531, Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]. ,Posttranslational modification, protein turnover, chaperones 
NC_002516,Chromosome,PA0059,,15595257,Protein,73468,73923,osmC,,osmotically inducible protein OsmC,,Class 2,ATGTCCATCCACAGCTCCGGAGGAGTCGACATGAAGAAGACGGCATCGGCGGTCTGGCAAGGCGGCCTGAAAGACGGCAAGGGCACCCTTTCCACTGAAAGCGGCGCGCTCAAGGACAACCCCTATGGCTTCAATACCCGCTTCGAGGGCGCACCGGGAACCAACCCGGAAGAGCTGATCGGCGCGGCCCACGCCGGCTGCTTCAGCATGGCCCTGTCGATGATGCTCGGCGAGGCCGGCCTGACCGCCGAACGTATCGAGACCCGCGCCGAGGTCACCCTCGACAAGCAGTCCGACGGTTTCGCCATCACTGCCGTGCACCTGGTGCTCAGGGCGCGCGTGCCGGGGGCGGACGCGCAGACCTTCGAGCAGATCGCCAACAAGGCCAAGGCCGGTTGCCCGGTATCCAAGGTGCTCAACGCGAAGATCAGCCTGGACGCCAGCCTCGACGGCTGA,MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGFNTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSDGFAITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG,,1715407 ; 8820643 ; 9663683 ; ,,69% similar to osmotically inducible protein OsmC [Escherichia coli] ; ,,,,Adaptation, Protection ; ,Unknown,Class 3,,,,,,,,,,PF02566 ,OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in Escherichia coli. This family also c