Replicon Accession Replicon Name Locus tag RefSeq Accession RefSeq GI (protein ID) Category Start Stop Gene name altGeneName Product name altProteinName Product Name Rating Nucleotide Sequence Amino Acid Sequence comment evidenceReferences genomicContext homology structureFeature pathway ecNumber functionClass localization localizationClassConfidence geneOntology tigrfamAccession tigrfamName tigrfamFunction tigrfamIsologyType tigrfamSignificance tigrfamEcNumber tigrfamRole tigrfamSubRole pfam pfamDescription cog cogDescription COG_Category primaryFunctionClassID NC_004633 Plasmid_pDC3000A PSPTOA0001 NP_808663 29171479 Protein 351 1664 repA replication protein RepA ATGAGCCACGACAACGCGATCAGTCTTGCCCTCGCGACCTCATCCACGGCCAACACCGATCCGCTGGCCAGCAGCACCCACCTGCCGCCTGCCCGTTTCTTCGAAGACGGCACTGCGCTCAACCGGTTATTGCTGGAAGCGCCGTACATGGCGCGGTGCAGTGACGACAAAACCGCGACTCGCGTCCGTCCTCGTGAATACGCGCTGCGTTATCCCTATATGCAGGTCAATCGCCCCGGCATGGTGTCGTGGCTGGTGTTCGACCTCGACCATGCCAACGCCTTGGCTTGGGACGATGCCGGGTTGCCCGCGCCGAACCTGATGGTGCGCAACCGCAAAAGCGGCCATTCCCAGTTGTTCTATGCCGTGCCGTCCGTATGCACGACAGAGAATGCACGGGCCAAGCCGATTCAGTACATGAAGGCGATCTATGCCGCGTTTGCCGCTCGCCTCGACGCGGACGTGGACTACCACGGTGGCCCCGTGGCCAAAACGCCCGGCCACCCTTGGTGGGAGACGACCGAATTTCACAGCCACGTGTATGAACTGGGCGAACTGGCGAGCGCGGTGGAGTTGACCGTCAAGCCGTGGGCCACCGGCCCCAAGCTGGACCAGGTCAGCCATTCGCGGCACTGCATCCTGTTCGAGCAGCTGCGTTATTTTGCGTACAGCATCGTCAATCGCGAGCGCGAGCTGGGTTCGTTTGAGTCGTTCATGCGCTCGCTCGATGCGTATGCCTACAACCACAACAGCTTTCTAAAACAGGGGTTTTCGGAAAACCTGCCCCTGTCGTCGATACGCGCCACGGTCAAATCCGTAGGCCGCTGGACGTGGGATCGGTACACCGGTGATCGTCGCTGCCATCGAGGCGCAATGCAGCTCGATGGCAGCCTGTCGCTCACCGAGCGGCAGAGCCTGGCGGCCAGGCGCACCCATGAACTACGACACAAAGCCACAGAATCGAAGATACGCGCCGCGTGCCGACAGCTTCAAGACCAGGGCAAGGCGCTGGTACGTTCTGCCATTGCAACACTCGCCGGCGTTTCGGTGAGAACGGTGGCCAGCTACACGCACATCCTCACTGAAGTGGCTCAACCGACCACTGTGAGCGTTCTCAAGGTCAGCCGTAAGGCTGTGCCCATGCAACCTAAGCAAGATCGCTCACCCGCTACCCCACCTGTTCGGGCCCCCGTTGGTCAGCCTGCTGATGGCCGCGCTTCGGGTGTGCAACATGGTGTACATCAGATATCTGCGGTCACGCAGGGGCCGCAAGCTGGAGAGCCCTTAAAAACAGAACATGAGGATGGTTCATGA MSHDNAISLALATSSTANTDPLASSTHLPPARFFEDGTALNRLLLEAPYMARCSDDKTATRVRPREYALRYPYMQVNRPGMVSWLVFDLDHANALAWDDAGLPAPNLMVRNRKSGHSQLFYAVPSVCTTENARAKPIQYMKAIYAAFAARLDADVDYHGGPVAKTPGHPWWETTEFHSHVYELGELASAVELTVKPWATGPKLDQVSHSRHCILFEQLRYFAYSIVNRERELGSFESFMRSLDAYAYNHNSFLKQGFSENLPLSSIRATVKSVGRWTWDRYTGDRRCHRGAMQLDGSLSLTERQSLAARRTHELRHKATESKIRAACRQLQDQGKALVRSAIATLAGVSVRTVASYTHILTEVAQPTTVSVLKVSRKAVPMQPKQDRSPATPPVRAPVGQPADGRASGVQHGVHQISAVTQGPQAGEPLKTEHEDGS similar to GP:2664218 ; Unknown Class 3 PF03090PF08708 Replicase, Replicase family. This is a family of bacterial plasmid DNA replication initiator proteins. Pfam: PF01651 is a similar family. These RepA proteins exist as monomers and dimers in equilibrium: monomers bind directly to repeated DNA sequences and thus activate replication; dimers repress repA transcription by binding an inversely repeated DNA operator. Dimer dissociation can occur spontaneously or may be mediated by Hsp70 chaperones..PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.. NC_004633 Plasmid_pDC3000A PSPTOA0002 NP_808664 29171480 Protein 1803 2228 rulA ultraviolet light resistance protein A ATGAACGTCAAAATACTCGGTCGGTTGTGCGAATCCGGTAAGGTCATACCCTTCTACACTTTCAAAATCCCTGCCGGTTTTCCTAATCCTGCAGCGGACCACATCGAGCAAGACTTCTCATTCGACCGGCTGATGGATTTGCGCGCCCCTCACATTTACGTGGCCAAGATCGATGGCGACAGCATGGAGGGTGCAAAGATCTTTCATGACAGCTTGGTGGTTGTAGATCGCTCTCGAAAGCCGTCGAGTGGCAGCATCGTGATCGCGGCACTGAATAATGAGCCTCTGTGCAAAATCCTCATCCTGCAGGGCGACCATGTGGTGCTGAAGTCAGCCAACCCTGCCTATCCGCCTCGGCATATCCTGGAAGGTGAAGAGCTGTCGATATGGGGCGTTGTGCGACATGGCGTTACGAGCTTTGAGTAA MNVKILGRLCESGKVIPFYTFKIPAGFPNPAADHIEQDFSFDRLMDLRAPHIYVAKIDGDSMEGAKIFHDSLVVVDRSRKPSSGSIVIAALNNEPLCKILILQGDHVVLKSANPAYPPRHILEGEELSIWGVVRHGVTSFE similar to GP:11640739, and GP:11640735 ; Unknown Class 3 PF00717 Peptidase_S24, Peptidase S24-like.. COG1974 LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]. Transcription / Signal transduction mechanisms NC_004633 Plasmid_pDC3000A PSPTOA0004 NP_808665 29171481 Protein 2530 3540 site-specific recombinase, phage integrase family ATGGCCTCTATTGCCTCTTATGAGCACGTGCTTCACCGCTACCCCAGCGTTCAGCAATGGCTGGCGCTGCTCGGTAACCTGGGAAGAGCACCGGCTACCTTGGATGCCTACGGCAGGGGATTGGCGCATTACTTGCTCCACTGCGAAGCCTCCGGTCTGGAGGCTGAATCCATCACATTTGAGCAAGTCACGCTCTACATCCGTCGGCTACTGCCCGGGCAAGAAAACGCGGTGGCGAATTCGACCTTGCACCAGCGCCTCACCGCGATCCGCCTGTGGTACGACCACCTGGTGTTTCAGGGGCGTTGCGCACAGAATCCGGTACCTCGCGGCCAGCACGGCCGCCTGTGTCAGATCCCTGGACATTCAGGCTTTATGAGAGGGCTGGTGCCTCGCCTGATAAAGCTGCCCGACATCCCCTCGGATGAGCAGTGGCGTTACTTTCTCAGCATCGCGGCCAGGTCGTCTATTCGTGATCGACTTATGCTCTCGTTGGCATACTGCGGTGCGCTCCGTCGTGCCGAACTGGTGGGCCTGAGAATCGAAGACCTGGATCTCGCCCATCGACTCATTTCAGTGCGCGCAGAAACGACCAAAGGCCGACGCAGCCGTGTCGTGTGCTACAGCCCTGACATTGCGCCGATACTTGGAACGCATCTTCATGCCCTTCGTCTGGCCGGTTGGTCGAGAGGAGCCCTGTTTCGATCCGAGTCTGATCGCAATCGAGGTTCGGCACTCACGCGGTGGACGTGGAGTAAAACGGTAGAAAGATGGGCCACGGACTCAAATCTGTCATGCCTGAGTACACACACTTTTCGTCATCTGCGACTCACGCATTTGGCTCGTGCGGGGTGGAAACTGCATGAGTTGATGGCCTATGCAGGTCACCGGGATCCGAAGACCACCTTGATTTATGTGCACCTGTCGGGCGCGGACCTGACTGCAAAAATGGCGCATTCGGTGGGTAGTCTGGACGCCCGACTGTTCGCTGAACTCTTCAAGTCGGAGTAA MASIASYEHVLHRYPSVQQWLALLGNLGRAPATLDAYGRGLAHYLLHCEASGLEAESITFEQVTLYIRRLLPGQENAVANSTLHQRLTAIRLWYDHLVFQGRCAQNPVPRGQHGRLCQIPGHSGFMRGLVPRLIKLPDIPSDEQWRYFLSIAARSSIRDRLMLSLAYCGALRRAELVGLRIEDLDLAHRLISVRAETTKGRRSRVVCYSPDIAPILGTHLHALRLAGWSRGALFRSESDRNRGSALTRWTWSKTVERWATDSNLSCLSTHTFRHLRLTHLARAGWKLHELMAYAGHRDPKTTLIYVHLSGADLTAKMAHSVGSLDARLFAELFKSE similar to GP:9187580 ; Unknown Class 3 GO:0009009 ; TIGR02224 recomb_XerC tyrosine recombinase XerC equivalog 4e-10 DNA metabolism DNA replication, recombination, and repair PF00589 Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.. COG4974 XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004633 Plasmid_pDC3000A PSPTOA0005 NP_808666 29171482 Protein 6561 5731 hopAM1-2 type III effector HopAM1-2 ATGCACGCAAATCCTTTAAGCTCTTTCAACAGAGCTCAACATGGCAATCTGACTAATGTAGAGGCCAGCCAAGTTAAATCGGCAGGAACCTCTTCCACCACTAATATAGACAGTAAAAACATTGAAGAACATGTTGCAGACAGACTCAGTGATTTAGGCAGACCTGATGGTGGATGGTTTTTCGAGAAGTCACTTGGCACCTTGAAAAATTTAAATCTTGAGCAGTTAGCCGGAATCCATGATGTACTAAAATTAACAGATGGCGTAAAGAACATTGTCTCTTTTGGAGCTCGGGAAGGAGGCTTCGAGTTGGCAATGCAGTTTCGTCATGATTTATACAGATCTCAACATCCGGATGAAAACTCGCCGCACGATGCCGCAACTCATTATCTTGATGCAATCAGCCTGCAATCAAACAAATTTACAAAACTTGAAAAACTACAACATGTAGATGTATTTAAAATGCAAAACCCGTTTTGGGATGTCGGGTACAAAAACGGAATTGCGCACGCAAAAAAAATGGCATTCTTCATAACGCCAGAGTGGCTGGGTTCTGATTTCTGTAAACAGGAATTCCAGTGGCTTAGCGAAACAAAAAACAAAGACATAAAATCTGCATTTGTGATCTTTAAAGATGTAGACTTAAAAAGCAAAAATATGACAAGTATCTTCAATTTTGCAGACTTCCATAAATCACGCGTCATGATGGCAAGCACACCTCCCGAATCGGGATTGAATAATGTAAAAATCGAAAATAGCGTTGACCTGAATTTCAAGAGGTTATTAACTGACCGTGAGTCATGGGAACTAAATAATTTCCTAGGCGACTAA MHANPLSSFNRAQHGNLTNVEASQVKSAGTSSTTNIDSKNIEEHVADRLSDLGRPDGGWFFEKSLGTLKNLNLEQLAGIHDVLKLTDGVKNIVSFGAREGGFELAMQFRHDLYRSQHPDENSPHDAATHYLDAISLQSNKFTKLEKLQHVDVFKMQNPFWDVGYKNGIAHAKKMAFFITPEWLGSDFCKQEFQWLSETKNKDIKSAFVIFKDVDLKSKNMTSIFNFADFHKSRVMMASTPPESGLNNVKIENSVDLNFKRLLTDRESWELNNFLGD Also known as AvrPpiB2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0007 NP_808667 29171483 Protein 8255 7782 hypothetical protein GTGAACCAAAATCAGCGCAAAGATTGGATAATTTCAACGAAAAAGGATAACCAAATGGATAGAAATCAAAATCGCGGAGCTGAAATACTTGCACTTACCTTGGGCCTTGCCATGGTCTGTTACGTTGTTGCCAAGGCGTTTTCAGACTACCTGGGCGTGGACATCACAGCCGGGGGGCGGGTACTTTTAGCGCTTTTAATGGCCCTGGGTATGATTGGCTATGCAGTCTGGAGCGAGCTGACAAATGGGTTCCTCGGCTTCAGGGCACTTTTACCGTTGGCATTTTCCACTCTCTGGAGCGGTATGTGGCCAGCCATGCAGTATTGGGGCACCAAGTCGCTGTATTTCCCCGGCCTGCCTAGTGAGTATCAAGACTTGGAATGGTGGGCAAATGGATATACTCAGTGGGGTGGATGGGCTCTCATCCTGTTCGGCGGATATGGCATTGCATATTTCACCTGGCGGGCTAGGTAA MNQNQRKDWIISTKKDNQMDRNQNRGAEILALTLGLAMVCYVVAKAFSDYLGVDITAGGRVLLALLMALGMIGYAVWSELTNGFLGFRALLPLAFSTLWSGMWPAMQYWGTKSLYFPGLPSEYQDLEWWANGYTQWGGWALILFGGYGIAYFTWRAR similar to GP:14488264 ; Cytoplasmic Membrane Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0008 NP_808668 29171484 Protein 9136 8252 partion protein, ParB family ATGCTTCAAAGAATGAGCCAAGACTCCGAATCACCACAACTACAGGTGCCGAATTCAGAAGCGGCCTCAAGCAGGACCGCTATCCATATTCTGAATGTTGACCAGATAGTAAAATCACCATTTCAGCCAAGATTAGTTTTCGATCAGGCTGCACTCGAAGATCTTGGAACGTCAATCCAGACAATTGGTCTGGGACAGCCAATCCTTGTCAGGCCGCTGCCGAACGGACTTTTTGAGTTGATAGGCGGGGAGCGTCGATGGAGAGCTTCTAAACTCATCGGCAACATGACCATAGAAGCTATGGTCAAGCCCATGTCAGATGATCTCGCAATGCTTTTGGCGTTGACAGACAACGACCAGGAAGACCTCACAGACTATGAGAAAGCTCGTAGCTATTACTGTCTTCTCAAAAATGGTGAAGATTCGAGTATGCGTGCTCTAGCAAGGCGACTAGGTACGAATCATTCAGTGATCAGCCGTCTCCTGCAGCTGACACAATTACCCGAGAGCATACGCACAATACTGGACGGGCATCCAGCGCTAATCACGGCGAATTACGCTAAAGATTTCAAAGACCTATCCACTATCAATGAAGATTTAGTAGTAAATGTGGTCGAAAAAATGGCTTCAACTGGACTGCCACAAGAAGCTGCACTGAAATTGATAAGACGTGAAGTTGATTCGTTAAGCAGACCTGAAGCAAAGCAGGCAAAAAAAAGTGCAGTAGACGGGATAGGGACACTGCGTATTCTGGGTGACAGGGTTGAGGTCAAGTGTGCAAAGGGAATTGACGCTACAAAACTCGCTCAGGAATTTTTGACATTCCTGCATTCTTTGGATAAAGCTCAAATCCTAGAAGCTGATGAGTCCCCGTCGGGCCAGTGA MLQRMSQDSESPQLQVPNSEAASSRTAIHILNVDQIVKSPFQPRLVFDQAALEDLGTSIQTIGLGQPILVRPLPNGLFELIGGERRWRASKLIGNMTIEAMVKPMSDDLAMLLALTDNDQEDLTDYEKARSYYCLLKNGEDSSMRALARRLGTNHSVISRLLQLTQLPESIRTILDGHPALITANYAKDFKDLSTINEDLVVNVVEKMASTGLPQEAALKLIRREVDSLSRPEAKQAKKSAVDGIGTLRILGDRVEVKCAKGIDATKLAQEFLTFLHSLDKAQILEADESPSGQ similar to GP:6273613 ; Cytoplasmic Class 3 PF02195 ParBc, ParB-like nuclease domain.. COG1475 Spo0J, Predicted transcriptional regulators [Transcription]. Transcription NC_004633 Plasmid_pDC3000A PSPTOA0009 NP_808669 29171485 Protein 10484 9357 ATPase, ParA family ATGACTCCTGCCGATAACGAAATAGCTGAACAGCAGAATTTTGTAGACTTCAACTCCATTCTTTATACGCCTCAGTACGCCGCTGGCTGCTTCGGTCTGACTACGCGTCGACTTATGGCCATTGAAGAAGAACACGGCTTGGACATCAAACGCATAAAGCGTGGGTCGTCTACATCCAGGGTCTACACGGCCTCGGATCTTTTCAACATCGCCGCGCTGCGTCGGTCGCTAGGCCATCTCAAACCAATTGGTCGTCAAATTGTCGCTTCAACCTTCGTGCCAAAGGGCGGGACTGCCAAGACCACTACCGCGGTCAACCTTGCTATTAGCGCTCAATTTGCAGGGATTAAGACACTAATTATCGATAATGACCCTCAGGGTGATACCTCAAACATGCTGGGTTATGACCCCGACCTCAGCCCAGATGATCTCGTCGACATGAACATTCCTTCAGATCGGCTGGTGGATGGACATTTTGGCAATCTTCTCAGCCCGTTGCTTCGAATGAAGCCTTTTTCAGAAAAGGTGCTCGCTGATGTGATCAAAAAACCTTTTGGCGAAAACGGCATTCATCTCATCCCGGCTGACACATATCTTGAGGATTTGGCTGTTGCGCTCGATGCTTCGAACAATTCGGATATGTGGTATGCCCGATTCATCGAAGACGCAAATGCAGGAAAAGTACCAGGATGTGACCTTTCTGTTTATGACCTGATAATTATTGACAACGCGCCTGCTGGCTCTCGATTGACCAAGAATTCAGTTGCAGCTAGCGATCTATTGTTGTGCCCCGTTCGGATGGACAAATTTTCGTTCAGAGCACTGTTAAGGTTGCATGAGTGGTGCGCTCGATTCGCAAAAGAGTACAGCTATGCGCCTGCTCTCATGGCTATTCCTACGATGTTTATTCGCAAGCGCGCTAGGTTGTTAGCAAATCTTCAATCACTCAACACGCTTTTCCCTGGGCAGGTAACTGAGGAAAAAATCTATTTTTCCGAAGATTATTCGAAGTCACTGGATGATGGTATTCCTCTCATGTTGTGGAAGAGGGCGAACTCACAAACCATCGACACTGCAAGGCTTGTCTTTGGTGAAATCTTGCAGAAGATTCGCAGCTTGGCCGCCTGA MTPADNEIAEQQNFVDFNSILYTPQYAAGCFGLTTRRLMAIEEEHGLDIKRIKRGSSTSRVYTASDLFNIAALRRSLGHLKPIGRQIVASTFVPKGGTAKTTTAVNLAISAQFAGIKTLIIDNDPQGDTSNMLGYDPDLSPDDLVDMNIPSDRLVDGHFGNLLSPLLRMKPFSEKVLADVIKKPFGENGIHLIPADTYLEDLAVALDASNNSDMWYARFIEDANAGKVPGCDLSVYDLIIIDNAPAGSRLTKNSVAASDLLLCPVRMDKFSFRALLRLHEWCARFAKEYSYAPALMAIPTMFIRKRARLLANLQSLNTLFPGQVTEEKIYFSEDYSKSLDDGIPLMLWKRANSQTIDTARLVFGEILQKIRSLAA identified by match to PFAM protein family HMM PF00991 ; Unknown Class 3 PF01656 CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.. COG1192 Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]. Cell division and chromosome partitioning NC_004633 Plasmid_pDC3000A PSPTOA0010 NP_808670 29171486 Protein 14193 11224 transposase, Tn3 family ATGCCACGTCGCTCGATTCTTTCCCTTGCGGAGCGGGAAAGCTTACTGGCGTTGCCAGATTCCCAAGATGAAATGATTCGTCACTACTCTTTCAGCGAAACCGACCTCGCCATCATCCGCCAACGGCGTGGGTCTGCAAATCGGCTGGGCTTCGCTGTACAGCTCTGTTACATGCGCTATCCCGGGGTAACACTTGCTATGGATGAAGAACCATTCGAGCCATTGCTGCGCTTGGTGGCCACGCAACTGAAGGTGCCGCCTGAAGCATGGGCTGACTATGGGCAACGCGCCGAGACGCGCCGCGAGCACCTGTTGGAATTACAAGCTCTTTTTGAGTTTCAGCCATTCACAACAAGACATTATCGTCCCTGCGTTCATAGTTTGGATGAACTGGCATGGCAGTCCGACAAAGGCTTCGTGTTGGCGACGGAGTTGGTTGAAGGGTTGCGACGACAGAACATATTGCTTCCATCACCAGGTGTGATCGAGCGCATTTGTGCTGAGGCAATCACCCGCGCCAATCGGCGGATCTATGAAGCCTTGTCCGAGCCTCTTTCGAATACACACCGCCGTTGCCTCGATGGCCTCCTTAGACGCCGAGACAAAGGCCAGACCACCTGGTTGGCCTGGTTACGCCAGTCGCCAGTTAAACCGAACTCACGGCACATGCTTGAACACATCGAGCGCCTCAAAGCATGGCAGGCTCTCGATCTACCAGCAGGCATTGAGCGGCTGGTTCACCAGAATCGCCTGCTCAAAATTGCCCGTGAAGGCGGCCAAATGACACCTGCTGACTTGTCCAAGTTCGAATTGCAACGACGCTACGCTACCCTTGTGGCACTGGCCATCGAGGGCATGGCCACCGTCACTGACGAAATCATCGACCTGCACGATCGTATCCTGGGCAAGCTGTTTAACGCAGCCAAGAATAAACACCAGAAACAGTTCCAGGCATCCGGAAAAGCGATCAACGCAAAGGTGCGAATTTATGGACGCATCGGCCAAGCCCTGCTGGAGGCCAAGCAAAACGGCTGCGATCCGTTTGCTGCCATCGAAGCGGTCATGTCTTGGGAGGCTTTCGCCAAGAGTGTCACCGAAGCGCAAAAACTTGCACAGCCCGAAGACTTCGACTTCCTGCACCGCATCGGCGAGAGCTACGCCACGTTGCGCCGCTATGCTCCGCAGTTTCTCGACGTACTCAAGCTGCGGGCTGCGCCCGCAGCCAAGGACGTGTTTGAAGGCATTGAGGTATTGCGCGCAATGAACACTGACAACGCCCGTAAGGTTCCCGTCGATGCCCCGATCGGGTTCATCAAGAAGCGCTGGAAGAAACTGGTTATAACCGACGGCGGTATCGACCGGCGCTACTACGAACTGTGCGTGATGTCGGAACTAAAGAACGCGCTGCGCTCTGGAGATATTTGGGTGCAGGGATCGCGTCAGTTCAAGGACTTCGAGGATTACCTGATGCCATCCGAGAAATTCGCCCATCTCAAGCTGGCCCATGAATTGCCTCTGGCCGTAGCCACCGACTGCGACAAATACCTGAACGACCGGTTGACGCTGTTGGAAGCTCAGCTTGCCACCGTGAACCGCATGGCTCTAGCCAATGACTTACCGGATGCCATCATCACCGAGTCTGGTTTGAAGATCACGCCTCTGGATGCGGCAGTGCCAGATACCGCACAGGCGTTGATTGATCAAACCGCAATGGCTATGCCGCATATCAAGATCACCGAATTGTTGTTGGAGGTGGACGAGTGGACAGGATTCACCCGGCATTTCGCACATCTGAAATCGGGTGACCTGGCCAAGGATAAGCACTTACTGTTGTCCACCATCCTGGCTGATGCGATCAACCTAGGCCTGGCTAAAATGGCCGAGTCTTGCCCTGGCACCACCTACGCAAAACTGTCCTGGCTACAAGCCTGGCACATCCGTGACGAAACCTATTCGGCCGCGCTGGCTGAGCTAGTAAACGCGCAGCTCCAACATCCTTTTTCCAAGCATTGGGGTGACGGTACCACATCATCGTCAGATGGACAGAATTTCAGAACTGGCAGCAAAGCCGAGAGTACGGGTCACATCAATCCCAAATACGGCAGCAGCCCGGGACGAACTTTTTACACCCACATTTCTGACCAGTACGCCCCGTATCACCTGAAGGTGGTCAACGTTGGCGTGCGCGATTCTACCTATGTGCTTGACGGGCTTCTGTATCACGAATCTGACCTGCGTATTGAGGAGCACTACACGGATACTGCGGGCTTCACAGATCACGTCTTCGGTCTGATGCATTTACTGGGTTTTCGCTTTGCACCGCGCATCCGCGACCTAGGCGATACCAAGCTGTTCGTGCCCCAAGGAAATATCGATTATGACGCGATTAAGTCAATGATTAGTAAAGAAAAACTGGATATCAAGGCCATTCGGACGCACTGGGATGAAATTCTGAGGCTGGCCACCTCGATCAAACAAGGTACCGTGACTGCCTCGCTGATGTTGCGCAAGCTGGGTAGTTATCCTCGGCAGAACGGCTTAGCCGTTGCCCTTCGCGAAATCGGTCGCATCGAACGCACGCTGTTCATTTTGGACTGGCTACAAAGTGCCGAGCTGCGCCGTCGTGTGAATGCAGGACTGAACAAGGGCGAAGCGCGCAATGCGCTGGCCAGGGCTGTCTTCTTTAACCGGCTGGGCGAAATCCGAGACCGTAGCTTCGAACAGCAACGCTACCGTGCCAGCGGCCTCAACTTGGTGACTGCTGCAATAGTGCTGTGGAACACGGTTTACCTGGAGCGGTCCGCAAACGCATTACGCGGACATAGCACCGCTGTCGATGAATCGCTGCTGCAGTACCTGTCGCCGCTGGGCTGGGAGCACATCAACCTAACTGGTGATTACCTGTGGCGCAGCACCGTCAAGGTTGGTGGAGGAAGATTCCGGCCATTACGACGACTGAAATCAGCTTAA MPRRSILSLAERESLLALPDSQDEMIRHYSFSETDLAIIRQRRGSANRLGFAVQLCYMRYPGVTLAMDEEPFEPLLRLVATQLKVPPEAWADYGQRAETRREHLLELQALFEFQPFTTRHYRPCVHSLDELAWQSDKGFVLATELVEGLRRQNILLPSPGVIERICAEAITRANRRIYEALSEPLSNTHRRCLDGLLRRRDKGQTTWLAWLRQSPVKPNSRHMLEHIERLKAWQALDLPAGIERLVHQNRLLKIAREGGQMTPADLSKFELQRRYATLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKHQKQFQASGKAINAKVRIYGRIGQALLEAKQNGCDPFAAIEAVMSWEAFAKSVTEAQKLAQPEDFDFLHRIGESYATLRRYAPQFLDVLKLRAAPAAKDVFEGIEVLRAMNTDNARKVPVDAPIGFIKKRWKKLVITDGGIDRRYYELCVMSELKNALRSGDIWVQGSRQFKDFEDYLMPSEKFAHLKLAHELPLAVATDCDKYLNDRLTLLEAQLATVNRMALANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMAMPHIKITELLLEVDEWTGFTRHFAHLKSGDLAKDKHLLLSTILADAINLGLAKMAESCPGTTYAKLSWLQAWHIRDETYSAALAELVNAQLQHPFSKHWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPYHLKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGDTKLFVPQGNIDYDAIKSMISKEKLDIKAIRTHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALREIGRIERTLFILDWLQSAELRRRVNAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERSANALRGHSTAVDESLLQYLSPLGWEHINLTGDYLWRSTVKVGGGRFRPLRRLKSA This gene assignment is based in part on its location adjacent to a gene for resolvase. ; Unknown Class 3 PF01526 Transposase_7, Transposase. This family includes transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from E-coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalysis of numerous transposases.. COG4644 COG4644, Transposase and inactivated derivatives, TnpA family [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004633 Plasmid_pDC3000A PSPTOA0011 NP_808671 29171487 Protein 14315 14860 resolvase, putative ATGCGACTTTTTGGTTATGCCCGCGTCTCCACCAGCCAACAGTCCCTTGACGTACAGATAAACGCGCTCAAGGCTGAAAACGTCAGCGCAGCAAGGATTTTTACTGACAAGGTCTCGGGCAGTCATGTGAACCGCGAAGGCCTCAAGCTGCTGCGGCTCAAGGTCGAAGAGGGCGATGTTGTCTTGGTAAAAAAACTTGACCGATTAGGTCGCGATACTGCGGACATGATTCAGCTCATCAAAGAGTTCGACGACATGGGCGTGGCCATCCGTTTTCTGGATGATGGCATCAGTACAGAGGGGACCATGGGAAAAATGGTGGTCACCATCCTGTCTGCGGTGGCTCAGGCCGAGCGCCTGCGCATACTGGAACGTACCAACGAAGGTCGTTTGGAAGCCAAGGCCAAGGGCGTGAAATTTGGCCGTAAACCTAAGGTGAATAAGGCCGATGTCTTCACCCTGCACGATCAGGGTGTCAGTGCGATGGAGATTGCCAGGCAGCTGAAGATCGGTCGTTCGACGGTCTACAAAGCGCTGGCATCGTGA MRLFGYARVSTSQQSLDVQINALKAENVSAARIFTDKVSGSHVNREGLKLLRLKVEEGDVVLVKKLDRLGRDTADMIQLIKEFDDMGVAIRFLDDGISTEGTMGKMVVTILSAVAQAERLRILERTNEGRLEAKAKGVKFGRKPKVNKADVFTLHDQGVSAMEIARQLKIGRSTVYKALAS This gene assignment is based in part on its location adjacent to a Tn3 family transposase. ; Cytoplasmic Class 3 PF00239PF02796 Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796..HTH_7, Helix-turn-helix domain of resolvase.. COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004633 Plasmid_pDC3000A PSPTOA0012 NP_808672 29171488 Protein 16068 14914 HopX1 type III effector HopX1 ATGAAAATACATAACGCTGGCCTAACCCCACCTTTGCCGGGCATTTCGAATGGAAACGTTGGAAAGGCGGCGCAATCATCAATAACTCAACCGCAGAGCCAGCAAGGCTCTTATGGCTTGCCACCAGAAAGCTCTGAGACTCGCCCTGATAGGGCGCGTGCGAACTATCCATATTCATCAGTACAAACACGGTTGCCGCCCGTTGCGTCTGCTGGGAAACCGCTGCCTGATACACCATCTTCTTTGCCCGGCTACTTACTGTTGCGAAGGCTGGACCATCGCCCTGTGGATCAGGAAGGTACCAAAAGTCTGATCCCGGCAGACAAGGCTGTGGCTGAAGCGCGCCGTGCATTGCCCTTTGGAAGAGGCAATATTGATGTGGATGCGCAACTTTCCAATCTGGAAAGTGGAGCCCGCACCCTTGCAGCAAGGTGCTTGAGAAAAGATGCCGAGGCCGCCGGTCATGAGCCTATGCCTGCGAATGAGCCGATGAACTGGCATGTTCTTGTTGCGATGTCAGGCCAGGTGTTCGGCGCGGGCAACTGTGGCGAACATGCTCGTATAGCGAGCTTCGCCTATGGAGCTTTGGCCCAGGAAAACGGACGATCTGAATATGAAAACATCTACTTGGCTGCATCGACTGAGGAAGATCATGTGTGGGCTGAAACCGACGAATCCCAGTCTGGCACCTCAACGATTGTCATGGATCCGTGGTCAAATGGTTCAGCCATATTTGCGGAGGACAGTAGGTTTGCGAAAAATCGAAATGCTGTAGAGCGTACGGATACGTTTAATCTTTCAACCGCAGCCGAAGCGGGCAAAATTACGCGTGAGACAGCCGAGAAGGCTTTGACGCAGGTCACAACCCGATTGCAGAAACGCCTGGCGGATCAGCAGGAGCAAGTCTCGCCCATCAAAAGTGGTCGCTATCGACCAGAAAAATCGGTACTTGATGATGCATTTGTCCGCAGAGTGAGCGACAAGTTGACCTCCCCTGATTTGCGGCGTGCACTACAGGTAGATATTGAAGCGGTCGGAGTCGCAATGTCGCTCGGCACCAAGGGCGTCAAGGACGCTACTCGACAAGCCCGACCTTTGGTTGAGCTTGCAGTGAAGGTCGCCTCTCCTCAAGGCTTGGCGAGACGAGATGTCTGA MKIHNAGLTPPLPGISNGNVGKAAQSSITQPQSQQGSYGLPPESSETRPDRARANYPYSSVQTRLPPVASAGKPLPDTPSSLPGYLLLRRLDHRPVDQEGTKSLIPADKAVAEARRALPFGRGNIDVDAQLSNLESGARTLAARCLRKDAEAAGHEPMPANEPMNWHVLVAMSGQVFGAGNCGEHARIASFAYGALAQENGRSEYENIYLAASTEEDHVWAETDESQSGTSTIVMDPWSNGSAIFAEDSRFAKNRNAVERTDTFNLSTAAEAGKITRETAEKALTQVTTRLQKRLADQQEQVSPIKSGRYRPEKSVLDDAFVRRVSDKLTSPDLRRALQVDIEAVGVAMSLGTKGVKDATRQARPLVELAVKVASPQGLARRDV Also known as AvrPphE ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0013 NP_808673 29171489 Protein 17354 16332 ISPsy4, transposase ATGTTGACCCAGGAGCAGTCTGTGGAAATTAAAGTGTTGGCCCGTCAGGGCCATGGCATCAAATTCATCGCCCGTGAGCTGGGTATTTCGCGTAACACCGTGCGCAAGTACCTGCGAAAGGCCCGGTCGCTACCCAGTGACAAGGTGAGACCCGCACGTCCGTGCAAAATCGACCCCTTCAAGGACTACCTGCACGAGCGTATTGAGGCGGCGCGCCCACACTGGATTCCGGCGACCGTCCTGCTGCGTGAGATCACGGCATTGGGGTACAGCGGCGGCGTCAGTCGTCTGAAGGCTTATATTCGCCCCTTCAAACGTAAGGCAGAAGAGCCGGTGGTACGTTTCGAGACACTGCCCGGCAAGCAGATACAGGTGGACTTCACCACCATTCGACGAGGCCGTCAGCCGCTTAAGGCGTTCGTGGCGACACTTGGTTTTAGTCGAGCAAGCTTTGTCCGTTTCTCCGAGCGAGAGGACAGCGAAGCCTGGCTGACAGGGCTTCGGGAGGCGTTCGCTTACTTTGGCGGCGTGCCCGAGCAGGCATTGTTTGATAACGCCGGAACCATCATCACCGAGCGAGATGCTTTTGGGGAGGGCCAGCACCGTTGGCATCCCCGATTGGCTGCGCTGGCCGATGAGTTTGGTTTTATTCCCAAGGTCTGCCGCCCTTACCGTGCCCAGACCAAGGGCAAGGTTGAGCGCTTCAACGGGTATCTGAAGGGCAGTTTCATTACCCCGTTGGCCGCTACGCTCAAGAGTGCGGGTCTGACGCTGGATGTGGTGACGGCCAACGCACATATCGGCCAATGGCTCGACGAAGTCGCTCATCAGCGGATTCACGGCACGACGGGTGTTCAACCGGCGGTACGTCTGGCCCAAGAGCAGCAGGTACTATTACCACTGCCAACACAGAGCCTGCGCCCACAACCCGCCCAAGGCCTACGCCTGGGACGGGTCCTGCCGTACGAGAGCTTGCAGCATCCGCTGTCGGTTTATGAGCAACTGCTGGAGGTGAGAGCATGA MLTQEQSVEIKVLARQGHGIKFIARELGISRNTVRKYLRKARSLPSDKVRPARPCKIDPFKDYLHERIEAARPHWIPATVLLREITALGYSGGVSRLKAYIRPFKRKAEEPVVRFETLPGKQIQVDFTTIRRGRQPLKAFVATLGFSRASFVRFSEREDSEAWLTGLREAFAYFGGVPEQALFDNAGTIITERDAFGEGQHRWHPRLAALADEFGFIPKVCRPYRAQTKGKVERFNGYLKGSFITPLAATLKSAGLTLDVVTANAHIGQWLDEVAHQRIHGTTGVQPAVRLAQEQQVLLPLPTQSLRPQPAQGLRLGRVLPYESLQHPLSVYEQLLEVRA The annotation of this disrupted copy of a multicopy IS21 family element is based in part on an HMM match, the ISFinder database, and on positional information. ; Cytoplasmic Class 3 PF00665 rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.. COG4584 COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004633 Plasmid_pDC3000A PSPTOA0014 NP_808674 29171490 Protein 17627 18256 ATPase, ParA family ATGCGAGTCATTGCGGTGTTGAACCAGAAAGGCGGCTCAGGGAAAACGACAATCGCCACGCACCTGACGCGCGCTTTCCAGTTGGATGGGTCCAGTGTGCTGCTGGTGGATTCAGACCCCCAGGGAAGCGCTCGTGATTGGGCAGCGGTGCTTGATGACAACCCTGTGACGGTTGTTGGTATCGACCGCCCTACCATCGACCGCGATCTAAAGGCGATCGGGCACAAAGATATTGTTGTTATCGATGGGGCACCCCAGGCAGCAGACTTGGCTATCTCAGCCATCAAAGCTGCCTCCTTTATTTTGATCCCAGTGCAACCGAGCCCGTATGACATTTGGGCTACAGCAGACCTCGTGGATTTGGTTAAACAGCGCATAGAAGTAACGGATGGTGCCTTGCAGGCAGCATTTGTCGTGTCGCGTGCAATCAAGGGTACGCGGATAGGTGCAGAGATTTCGGAAGCGTTGGCCGGCTATGGCCTCCCTGTACTGGAGTCGCGCATCACTCAGCGTGTGAGCTACCCAGGCACTGCCGCTCAAGGCACGACCATTCTCGATAGCGATCCAGAAAGTGACGGTGCGAAGGAAATTCGCGCGCTGATGACCGAGATAAAACAAAAACTTTTTTGA MRVIAVLNQKGGSGKTTIATHLTRAFQLDGSSVLLVDSDPQGSARDWAAVLDDNPVTVVGIDRPTIDRDLKAIGHKDIVVIDGAPQAADLAISAIKAASFILIPVQPSPYDIWATADLVDLVKQRIEVTDGALQAAFVVSRAIKGTRIGAEISEALAGYGLPVLESRITQRVSYPGTAAQGTTILDSDPESDGAKEIRALMTEIKQKLF similar to GP:8117184 ; Unknown Class 3 PF01656 CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.. COG1192 Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]. Cell division and chromosome partitioning NC_004633 Plasmid_pDC3000A PSPTOA0015 NP_808675 29171491 Protein 18277 18495 plasmid partition protein ParB, truncated ATGAGTGAAAAATTAAAAGGTGCTTTGAGTGCCGGCCGGCCAAGCGCGCGAAGCTCGAAGGCAACCACCTTGGCAAGCTTGGCTGATAAGCCTGCGACGGTTCGAGTCAATTTTGACCTGGATCGGGAGCAACACATGAAGCTAAAGCTTTATGCGACGAAGCAGGGAAGGAGTATCAAAGAGGTATTGAGCGATTTTGTGGCCCAACTACCTGATTAG MSEKLKGALSAGRPSARSSKATTLASLADKPATVRVNFDLDREQHMKLKLYATKQGRSIKEVLSDFVAQLPD similar to GP:8117185, and GP:5123481 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0017 NP_808676 29171492 Protein 19718 20146 shc01 type III chaperone ShcO1 ATGCGCACATCCGTTAATGGTCTGCTTGAGCACAGCCTGAAGACCCTGGGCTTTGATACTTCGGCATTGCAGGCCTTGCGCGACGACGGTTATTTACTGTGGCAAGGCAAGGATAAGCAAGCCAGTCTTCTGGTTCCCTCTACTGACGGCGACGCGCTTTTCGCTATCTGTACCTTGAGCCGTGTCGATCCCGAGCACGACGGACGTCTGCTGGCGCTTGCATTGCACCTGAACCTGTCTCCTGTCCACACGATGAGCGCATGTATAGCACTTGATGTCGAGCAAAACACGTTGTGTCTTCGCTACACCCATGACCTTGGCGGGAACGGGGCAGATACCCTGTTGCTTGCGCTCGAAAACGCCCAAGCGCTTGCTGAACAGATCAAGCAGGTAATCGAAAACTTTAGGCACGATCAGGGACGCCGATAG MRTSVNGLLEHSLKTLGFDTSALQALRDDGYLLWQGKDKQASLLVPSTDGDALFAICTLSRVDPEHDGRLLALALHLNLSPVHTMSACIALDVEQNTLCLRYTHDLGGNGADTLLLALENAQALAEQIKQVIENFRHDQGRR identified by Glimmer2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0018 NP_808677 29171493 Protein 20399 21250 hopO1-1 type III effector HopO1-1 ATGGGTAATATTTGTGGTACTTCTGGCTCCAATCATGTGTATAGTCCGCCTATTAGCCCTCAACATGCATCTGGTTCGTCCACACCAGTGCCCAGTGCTTCTGGGACGATGCTTTCTCTCAGTCATGAACAAATATTAAGCCAGAACTATGCTAGCAATATAAAGGGGAAATATCGCACGAACCCCCGAAAAGGACCATCTCCTAGGCTTTCTGATACGCTGATGAAGCAGGCGCTGTCTTCAGTGATCACACAAGAGAAAAAGCGACTTAAAAGTCAACCAAAGTCAATAGCCCAAGATATTCAGCCTCCAAACAGCATGATCAAAAATGCACTTGATGAAAAAGACAGCCACCCTTTTGGTGATTGCTTTTCAGACGATGAATTTCTTGCGATCCATCTCTATACGAGTTGTCTTTACAGACCGATCAACCATCATCTGCGGTATGCCCCGAAAAATGATGTCGCGCCTGTTGTCGAGGCAATGAATAGCGGTTTGGCCAAACTTGCTCAATACCCTGATTATCAGGTGTCTGGTCAGCTGCATAGAGGCATCAAGCAAAAGATGGATGATGGTGAAGTTATGAGTCGCTTCAAGCCGGGTAATACTTATCGTGATGACGCGTTCATGAGCACATCGACTAGAATGGATGTTACAGAAGAATTTACTTCCGATGTCACGTTACATCTGCAGTCCTCATCAGCCGTCAATATAGGTCCCTTTTCAAAAAACCCATACGAGGACGAAGCGCTCATCCCGCCCCTGACGCCTTTCAAAGTAACCGGTCTGCACAAGCAGGACGATAGGTGGCACGTCCACTTGAACGAGATCGCAGAGAGCTCTGACGAGTGA MGNICGTSGSNHVYSPPISPQHASGSSTPVPSASGTMLSLSHEQILSQNYASNIKGKYRTNPRKGPSPRLSDTLMKQALSSVITQEKKRLKSQPKSIAQDIQPPNSMIKNALDEKDSHPFGDCFSDDEFLAIHLYTSCLYRPINHHLRYAPKNDVAPVVEAMNSGLAKLAQYPDYQVSGQLHRGIKQKMDDGEVMSRFKPGNTYRDDAFMSTSTRMDVTEEFTSDVTLHLQSSSAVNIGPFSKNPYEDEALIPPLTPFKVTGLHKQDDRWHVHLNEIAESSDE Previously known as HopPtoO (PMID 11872842 ; Unknown Class 3 PF01129 ART, NAD:arginine ADP-ribosyltransferase.. NC_004633 Plasmid_pDC3000A PSPTOA0019 NP_808678 29171494 Protein 21259 22395 hopT1-1 type III effector HopT1-1 ATGAAAACAGTCAGCAATCACTCGATACCCAGTACAAATCTCGTCGTGGATGCGGGAACGGAAACTTCGGCGCAGAAATCCCAGCCGGTTTGCAGCGAAATCCAGCGTAACAGCAAGATCGAAAAAGCAGTCATCGAACACATTGCCGACCACCCGGCAGCGAAAATGACAATAAGCGCGCTGGTTGACACGTTGACAGACGTTTTTGTCAGGGCTCATGGGGAGGTTAAGGGGTGGGCCGAAATCGTCCAGGCAGTCTCTCGCCCTCATGACAGTAATCGACACGGCAGTGGAGTGCTCAGCCCGCGCTTTGATGTAATGGGGAGTGTTGGTTGGAATGCGGCAGCTATCCGGGCCACCAGTCGCGTCGGGACGCTTCGAGAGAAAGGTACACTGTTCACTAACCTTATGCTCAGTAACAACTTTAAACATTTGCTTAAACGAGTGGTTAACGATCCAGCCTTGCAGCAAAAGCTCGACGGTGGGTTAGACCTCAACTATCTGAAGGCTTGTGAAGGCGATCTTTATGTCATGTCAGGGTGGGCTGCACGGGCTAGCGAAAGTCGTGAACAAATTGGCAAAGCCCGGTATGAAACGGCATCAAATCTTAGCCAGACGCTGATCAGTGCACGTGAGTTGGCTTTTCATCGTCACAATCCGGTTAATCATCCGTCTGCCCAAACGAAAGTGGGCTTCGATAAGGGTTTGCCTGAGGAATCTGATCTGCAGGTTCTGAGAGGCCATGGCAGCAGTGTATGGAGTGTAAAACCGGGCAGCGATTTCGCAAAGCGTGCTGAAGTTTCTGGAAAGCCTATTATCGCCGGCCCGTCCGGTACCGCTTCGCGCATGGTCGCTGTTGCGCGTTTTCTGGCACCGGCTTGTTTGAAAAGCCTGGGTATTGAGAGTGAGCAGAACCTGAAAGAGCTTGTGCGGTATGCCTGCTATGCCTATTTCGGTCAGGACAGCCACCATTCGATGCTTGAAGTGAATCTTGGTGTCGCTTCCCATGGAATGCCGGAACAATGGGACGACACGCTTTATAACGAGCCTTTCAGTAATTCAATTAAAGGTCGCGGGTTTGGTATAGACAATCTCGCGCATAGGCAAGTCGTCAGGCAGGCGGCTCAAAAGTCATGA MKTVSNHSIPSTNLVVDAGTETSAQKSQPVCSEIQRNSKIEKAVIEHIADHPAAKMTISALVDTLTDVFVRAHGEVKGWAEIVQAVSRPHDSNRHGSGVLSPRFDVMGSVGWNAAAIRATSRVGTLREKGTLFTNLMLSNNFKHLLKRVVNDPALQQKLDGGLDLNYLKACEGDLYVMSGWAARASESREQIGKARYETASNLSQTLISARELAFHRHNPVNHPSAQTKVGFDKGLPEESDLQVLRGHGSSVWSVKPGSDFAKRAEVSGKPIIAGPSGTASRMVAVARFLAPACLKSLGIESEQNLKELVRYACYAYFGQDSHHSMLEVNLGVASHGMPEQWDDTLYNEPFSNSIKGRGFGIDNLAHRQVVRQAAQKS Previously known as ORF16 (PMID 12032338 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0021 NP_808679 29171495 Protein 23956 23291 resolvase, putative TTGATACAATCATTTGACTACACCCAAAATGAGACGGATCTACTGATGTTCATTCGTGCATACCTTCGAGCATCGACCGATGACCAGGACGCAAGTCGAGCGCGCGATTATTTGGAAACGTTTGTCTCCGGCTACGGCAAGGCCATCGCATCGTGCTACATGGAAAATGCCAGTGGCAGCCATGCCGACCGCCCGGAATTAATCCGACTACTCAAAGATGCTCGCCGAGGTGACGTGCTGCTGGTGGAAAGCATCGATCGGCTGTCGCGAATGGATGACCAGGCTTGGCGATCCCTCAAAACAGCAATCGATAACCGAGGCATACGGATCGTCTCTGTGGATCTGCCTACCAGTCATCAAGGCATGACGGCCCAGTCGGGGGACGAGTTCACCGACCGCATGCTGGCGGCCATCAACTACATGATGATCGATATGATGGCCGCGATTGCCAGGAAGGACTATCAGCAAAGAAGACTGCGCCAGGCACAAGGGATTGAGAAGGCAAAAGCTTCAGGCGTCTACAAAGGCAGACCCGTAGACGCAGAGCTGCGTAACCGAGTGCGTGAGCTGCTGGCTGCAGGTCTCGGGATCCGCGCAGTAGCGAGGCACGCTGCGTGTTCAACTACGACCGTCATGAAGGTCCGCGACGAGCTGGCGCAACGTTAG MIQSFDYTQNETDLLMFIRAYLRASTDDQDASRARDYLETFVSGYGKAIASCYMENASGSHADRPELIRLLKDARRGDVLLVESIDRLSRMDDQAWRSLKTAIDNRGIRIVSVDLPTSHQGMTAQSGDEFTDRMLAAINYMMIDMMAAIARKDYQQRRLRQAQGIEKAKASGVYKGRPVDAELRNRVRELLAAGLGIRAVARHAACSTTTVMKVRDELAQR similar to GP:18077101, and SP:P22996 ; Unknown Class 3 PF00239 Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family (this family) contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase - see pfam02796.. COG1961 PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004633 Plasmid_pDC3000A PSPTOA0022 NP_808680 29171496 Protein 24081 24662 hypothetical protein GTGCGCCATTTTGAACACACCCTCCCTGTGCTCAGGACTGGTCTTTTGGCCGCACCTGAAGCCTACAACTGTGTCTTCATACAGGTTACATGTGGTTGCAGTTACGGTAGATTCGACTTTCATCAACCTGGACCTACCACCATGACTGTCGATCCTGACCCGCTTGGTCTTGCAACAAAGATCATCCAACACTACAGCAACGCCCAGATCGCCCAGTTGATCAGGATTATTAGTCCAGTTTCTCCCTGCGCCCTAATGACCGCAGAGGAGTTTGAGCGAGTCATGGTCGTACTTGCCGGCCAGAATCGACGACGAGCGTTCTCCGATCGTTCGATAAATGCTGCCAGGCTTGTCCTGGTTATGGGTGCCAGCGTGTCCGAAGCGGCTTTGGAAACTGGATTGGCCAGGCAGGTGGTTCACAGACTCATGACACGTATTCGGTCGCGCCTGGAGGGTTTGCCGGCTAATTGGGTAAAGGTCGAAGCCTGGCTGCCCCCTGCAACTGCAGGCGATGTTCTGGCATTAGCTCAATCACTCAGATCTGCTCAATCGCAGGAGGAGAGGAGTGGCCTGGCTGTTTGA MRHFEHTLPVLRTGLLAAPEAYNCVFIQVTCGCSYGRFDFHQPGPTTMTVDPDPLGLATKIIQHYSNAQIAQLIRIISPVSPCALMTAEEFERVMVVLAGQNRRRAFSDRSINAARLVLVMGASVSEAALETGLARQVVHRLMTRIRSRLEGLPANWVKVEAWLPPATAGDVLALAQSLRSAQSQEERSGLAV identified by Glimmer2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0023 NP_808681 29171497 Protein 24962 24612 hypothetical protein GTGTCGCGGGCGCAGCCGAACCCTTGTCAGGTGCCGCGCTCGATCTACCGTCAAGCGCACGGCGAAAGGTGCGCAGCAAAGCCTGCAGGTGATACGGGAAGTACAGGCAGCGACGGCAAGCGGAGCGCGCAGGCCGAGAGGCCGGAGGCGTTAGAGCCGGCTTGCCGGCGAGGATTGAAGCCCGAAGGGGCGAGACGGGCCGGCTTCATGGCCTGGCTCGATGCGCAGCACGAAAGCCCGGCCCTGAGCGCAGCGAAGGGAACGCACGTCAGAGGTTGTCAAATCGAACTGCACCGAGGCTCAAACAGCCAGGCCACTCCTCTCCTCCTGCGATTGAGCAGATCTGAGTGA MSRAQPNPCQVPRSIYRQAHGERCAAKPAGDTGSTGSDGKRSAQAERPEALEPACRRGLKPEGARRAGFMAWLDAQHESPALSAAKGTHVRGCQIELHRGSNSQATPLLLRLSRSE identified by Glimmer2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0024 NP_808682 29171498 Protein 25096 25473 hypothetical protein ATGAACAGACAAGCAAAGCAACAGCTGATGAAGCGCTTCACAAGCGGTCAGGTCGAGATCTGCAAAAAGCTGCTGAAACTGAGTCGCCAGGTACACAAGTTCAATGCCCGCGTCGAGTTCCTGGTGCTGACGTTCAAGCATGACCTGGCAGACGCCGTAGTCCGGTATGAACTTTGGGACAACGGTTTCGAAGGCCTGGGCGAACGCCAGTTCGACAACTGCTTTGAAATGGGTGACTCGGCCGAGGTGATCGCCGAACTAATCACCACAGCGCGTCGTGAAGGCTTCGTGGAAAAAATTCAGACCTGGTGCGGCAACGAATCGTTTGCCCGCTGGTGCAGCTACGCCGACCGCCAGGGCGACCTTTTCGCCGCTTAA MNRQAKQQLMKRFTSGQVEICKKLLKLSRQVHKFNARVEFLVLTFKHDLADAVVRYELWDNGFEGLGERQFDNCFEMGDSAEVIAELITTARREGFVEKIQTWCGNESFARWCSYADRQGDLFAA identified by Glimmer2 ; Cytoplasmic Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0025 NP_808683 29171499 Protein 25520 26356 hypothetical protein ATGCGTATGTCCAGCAACTTCCGTAACCCATGCATGATCCGCAGTGACGTCCCACTGAGCAACGATCAGATCGCCCACTATGTGCCTTCCATCTTTGCCGAAGAAGCGCACGACAGCAGGTCGGCACGTTATCTGTATATCCCGACCGTGCAGGTACTTGATGCGCTGCGCGCCGAAGGATTTGAACCATTCATGGCCTGTCAGACACGCGTGCGTGACCAGGGCAAACGTGAGCACACCAAGCACATGCTGCGCTTGCGCCATGCGAGCCAGATCCTGGACCAGGAAGCCAACGAAATCATCCTTCTCAACAGCCACGATGGCAGCAGCAGCTATCAAATGATTGGAGGCAAATTCCGTTTCGTGTGTGCAAACGGACTGGTACTGGGGGACGTTGCCGCTGACCAGAAAGTGCGCCATAGCGGCCGTGGTGATGTGGTAAATGACGTGATCGAAGGCGCCTTCGAAGTGTTGAAGCATTTCGAACAGATCGACCACATAACCGCCGACATGAAGCATCAACAATTAGACCAGGACGAGCAAGAGGCCTTTGCATTGGCTGCCTTGGCGTATCGCTACGATCCGGCAGAAGGACCTGCGCCTGTTACCCCGTCCCAGTTGCTCATGCCCCGCCGTCGTGAGGACCGCAGCAGCGACCTTTGGACCACGTTCAATCGAGTCCAGGAAAACACCATAAAAGGCGGTTTGACCGGGCGCAACAAGCAAGGCCGACGCACGACAACGAGGGCAGTTAATGGCATTGATCAGGATGTGAAATTGAATCGCGCACTGTGGGTGCTCGCACAGGCTCTGCAAGGCCGTCAGCTCGCCGCCTAA MRMSSNFRNPCMIRSDVPLSNDQIAHYVPSIFAEEAHDSRSARYLYIPTVQVLDALRAEGFEPFMACQTRVRDQGKREHTKHMLRLRHASQILDQEANEIILLNSHDGSSSYQMIGGKFRFVCANGLVLGDVAADQKVRHSGRGDVVNDVIEGAFEVLKHFEQIDHITADMKHQQLDQDEQEAFALAALAYRYDPAEGPAPVTPSQLLMPRRREDRSSDLWTTFNRVQENTIKGGLTGRNKQGRRTTTRAVNGIDQDVKLNRALWVLAQALQGRQLAA similar to GP:18077130, and GP:18077130 ; Cytoplasmic Class 3 PF06067 DUF932, Domain of unknown function (DUF932). Family of Proteobacteria proteins with unknown function.. NC_004633 Plasmid_pDC3000A PSPTOA0026 NP_808684 29171500 Protein 26414 26602 hypothetical protein ATGGGCCCCTATATCGTAACCTGGACCATGTACAGCGAAAACCCCGGCGACCACAAGGCAGCCGCCCAGGAAGTAGCGGAGCTATATTTTCAAGAACGGATTGCAGCAGGAGAGCCCGATACGGCTTGTACGTTCGTTGTAACAAACAGCAAAGGCGAATCGAAACAAATCGACCTAGCAGCGCATTAG MGPYIVTWTMYSENPGDHKAAAQEVAELYFQERIAAGEPDTACTFVVTNSKGESKQIDLAAH similar to GP:18077120 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0027 NP_808685 29171501 Protein 26954 26676 mobilization protein MobC, putative ATGGCGAAGCAAAAGACGTTCACCCAAAAAGAGTTGGAAGCCGCACGCCAGAAACTCGCTGAGCTTCCAGACCTGAGCCAGGACAAGCTGAGCCAGGCGGAAGTGCTTCAATCACTGAAAGCGGAAATAGTTGAGCTATGCACTGCGAAGGGCTACACAGTCACCGAGGTCAAGCAAGCGCTCGCTGACGTGGGCATGAATGTGACTGCCAAGGAAATTACTGAATTGACGTCTTCTCGCAAACGCGCAGCCCCTCGTGTTAAAGCGCAGACGGCTTGA MAKQKTFTQKELEAARQKLAELPDLSQDKLSQAEVLQSLKAEIVELCTAKGYTVTEVKQALADVGMNVTAKEITELTSSRKRAAPRVKAQTA similar to GP:5123487, and GP:5123487 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0028 NP_808686 29171502 Protein 27399 27728 mobilization protein MobB, putative ATGTCGAAAAGCACAGCGCGTCAAGCAACGGTGAGGATCGAAATTCGTTGCACTGAAGAGGATGCGGCCTTGATTCGCGAAAAAGCGCTGGCTGCCGAGATATCTGTTTCAGATCTGATGCGTCGTGCTGCGCTGAATCGCAAAATCAAGACACCGACTGACAAGAAGCTAATGGCCGCGTTGCTACAGCTGGGTGGCTTGCAAAAGCATTTGTTCAACCAGATGCAGGACAGCATGACAACTGATCTTAGCAAGCAATTTTCTGACGTGTTGGTCGCCATCCGAAATGCCGTCAATGCCATCGATCTGTCCCAGACTCGCATCAAGTAG MSKSTARQATVRIEIRCTEEDAALIREKALAAEISVSDLMRRAALNRKIKTPTDKKLMAALLQLGGLQKHLFNQMQDSMTTDLSKQFSDVLVAIRNAVNAIDLSQTRIK similar to GP:5123486, and GP:5123486 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0029 NP_808687 29171503 Protein 27739 29691 relaxase/mobilization nuclease MobA, putative ATGAACGTCATCATCCCCCCGAAACGCGGCGATAAGGGCTCCAGCTTTAACCGGCTGGTGAGCTATATCAGCGACCGTGGTGACAAGCCCAAAGATGATGATCTAGTCAGCGCTGCGCCTCGCCAGAATGCTTCGCGCACCAAGAAGGCGATGTTTGATCGGCTTGTCGATTATGCGGATCGAAATGATGGAGACGACCGTGCCGTCGTGATCACCGACGTGTTCCCCGATGGCCGTCAGCGCTTGATCAGTGGGGGCATTTCTTGCGAGACAAACTGCTTCTCCTGGGAGACATCGGCCGCGGAAATGAACATGGTTGCCGCCCAAAGTCGTCGCTGCCAGGACCCGGTCTATCACTTCATCTTGTCGTGGCGCGAAAACGAACTGCCTACTGATGCGCAGATATTCGAATGCGCCGAACACTGCATTCGTCAGCTGGGCATGGAAGGGCATCAGTACGTCACCGCTATTCACCAAGACACAGACAATACGCACTGTCATGTGGCGGTGAACCGAGTCAATCCCATTACCTACAAAGCCGCCGCCTTGTGGAATGATGCTGACACGTTGCAGAAAAGCTGCCGAGTCCTCGAACGCAAATACGGATTCATTCAGGACAATGGGAGTTGGCAGTGGGGTGTCAACGACCAATTGGTCCGTGCTCCTTTTCGGTATGGCAGTGCTCCGCAAGGGACTGTGCCATTGCAGGTCTATTCAAACACCGAGAGTCTCTATCATTACGCCGTGCGTGAGGTGCGCGAAAAGATATCTGAGCTTATCGAATCGCGAGAGATTACCTGGCGTCAAATCCATCTGGCCCTGCATGAACGTGGCTTGGGATTGAGGGAGCAAGGCGAAGGTTTGGTGATCTATGATTTCTTGCGCCCCGAGGGTCCTGTGGTCAAGGCTTCTTCGGTTCATCCGACGCTGACCAAGTTTCGATTGGAGGCCCACATAGGCCCGTTTGAAGGACCACCCACCTTCGAACATGAAGAATGGAGCTATGGTATTTCTTCCTATTACCAGCCTGCATTTGAACTCCGAGATAAAGACGTGCGTTTCGATCGCCGGCAGGCGAGAGCTGAGGCTCGGCTGGACTTAAAAATGCGCTACAAACGCTATCGTGAGGGATGGGAAAAACCTGATCTTCATGTCAAGGATCGATACCAGCAAGTGGCTGCTCGCTACCAGGCAATGAAGGCGGACGTCAAACGCTCTCAGCACGATCCTTTGCTTCGCAAGTTGCTGTATCGAGTTGCCGAGTTCGACCGGATGAAAGCCATGGCTGAGTTGCGCATCGAGCTTCGTGATGAGCGGCAAGCGCTTGCCGAAAAGGGCTTGCTTCGTCCGCTTGCATACCGTCCCTGGGTCGAGCAGCAAGCTCTCAGAGGGGACGTTGCGGCGGTCAGTCAACTGCGTGGATTTGTGTATCGAGAAAAGCGGAAGGAGCGCACTCCGGACGGTGGGTTTGATCGTCTTATCCAGTGCGGCCAGGCAGATGATTCTGCTGTCTATCACCTGCGCTCTTACACGTCACATTTGCATCGTGACGGCACTGTCGAATATCTGCGCGATGGCAGGGCGGGTGTGATCGACCGTGGCGATTTCGTCCACGTAAAACCGGGGTTCAATGACGACGATGAGTTGGACAATTATCGGCTGGCCGCCAACCTGGTATCCACGAAAAGCGGTGACGCTGTGAGGATCATTGGTGATGACCAGTTCGTAGACCAGGTGCTTGATGCGGGATGTGGCGTCAACCATCGCGGAAGTCAGTATGTGTTCCAAGTGACCGATCCAGAACAGTTGGCGCGCTACGACGTGATCGAGAGGGATCACCGTCAGTATTACGGATACGACGAGCCGTCCCGTCCCCAGTCCCCCGTACGTCATGATCCGGTGGATGATGCTCCGGATGATGGTTACCAGCCTCCAAGACCATTTGGCGGTTGA MNVIIPPKRGDKGSSFNRLVSYISDRGDKPKDDDLVSAAPRQNASRTKKAMFDRLVDYADRNDGDDRAVVITDVFPDGRQRLISGGISCETNCFSWETSAAEMNMVAAQSRRCQDPVYHFILSWRENELPTDAQIFECAEHCIRQLGMEGHQYVTAIHQDTDNTHCHVAVNRVNPITYKAAALWNDADTLQKSCRVLERKYGFIQDNGSWQWGVNDQLVRAPFRYGSAPQGTVPLQVYSNTESLYHYAVREVREKISELIESREITWRQIHLALHERGLGLREQGEGLVIYDFLRPEGPVVKASSVHPTLTKFRLEAHIGPFEGPPTFEHEEWSYGISSYYQPAFELRDKDVRFDRRQARAEARLDLKMRYKRYREGWEKPDLHVKDRYQQVAARYQAMKADVKRSQHDPLLRKLLYRVAEFDRMKAMAELRIELRDERQALAEKGLLRPLAYRPWVEQQALRGDVAAVSQLRGFVYREKRKERTPDGGFDRLIQCGQADDSAVYHLRSYTSHLHRDGTVEYLRDGRAGVIDRGDFVHVKPGFNDDDELDNYRLAANLVSTKSGDAVRIIGDDQFVDQVLDAGCGVNHRGSQYVFQVTDPEQLARYDVIERDHRQYYGYDEPSRPQSPVRHDPVDDAPDDGYQPPRPFGG similar to SP:P22899, and GP:5123485 ; Cytoplasmic Class 3 PF03432 Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification.. NC_004633 Plasmid_pDC3000A PSPTOA0030 NP_808688 29171504 Protein 30841 30218 glycosyl hydrolase, family 25 ATGAGCACAATTAAGAAAGGTATTGATCTATCGCATTTTCAAGGTGATATTGATTTTAAAAAAGTTTTTGAGGCTGGCATTGAGTATGCCTTTATCAAGACAACAGAAGGCGCTACCGTACAGGACAATAAATACACTACGTATCGTACTGACGCTAGAGCCGTCGGAATTAAAACGGGGGCATATCATTACTTTCGTGCGCTCAGCAGCTCGCCGGAAGCACAACGAGATAACATAGTTAGTACACTTACTGCTGCCGGCTTCGATGCATCTACTGAGTTTTTTGCAATCGATGCGGAGCTCGAAGGTAACGAAAAAGCTACCCCGGACGAAATGGCTGACAACCTTCATAAACTGCTAACTTTATTGGATAACGAAAAAATCCTAAAGAGCCAAAAATCATTTATATATTGCGATAATAACTTCTGGATGAATCATATTTTAGGAGAAAAATATGCATTTAGTGAATACCCTCTTTGGATCGCTAATTGGGATGTCAGTGAACCTAAAGTTCCAGCTTCATGGGAGGTAGCAGGTAAAAGCTGGTCAATTTGGCAGCACAGTAACAAAGGTCGCATCGCGGGCATTGAGGTTGATGTAGATCTTAATTGGGTTCGTACTTGA MSTIKKGIDLSHFQGDIDFKKVFEAGIEYAFIKTTEGATVQDNKYTTYRTDARAVGIKTGAYHYFRALSSSPEAQRDNIVSTLTAAGFDASTEFFAIDAELEGNEKATPDEMADNLHKLLTLLDNEKILKSQKSFIYCDNNFWMNHILGEKYAFSEYPLWIANWDVSEPKVPASWEVAGKSWSIWQHSNKGRIAGIEVDVDLNWVRT identified by match to PFAM protein family HMM PF01183 ; Unknown Class 3 PF01183 Glyco_hydro_25, Glycosyl hydrolases family 25.. COG3757 Acm, Lyzozyme M1 (1,4-beta-N-acetylmuramidase) [Cell envelope biogenesis, outer membrane]. Cell envelope biogenesis, outer membrane NC_004633 Plasmid_pDC3000A PSPTOA0031 NP_808689 29171505 Protein 32828 31647 hypothetical protein ATGGCAACTGCGAACAAAAACCTCAAGGCGACTTGGGTCGCGACAGTTACGAATCTTGACTGGCCGTCAGTCTCATCTGTGGCCATCACTGATGAGGCTGCACGTGTCAGTAAACAGAAAGAAGAATTGACCGGCATTCTTGATGAAATTGTGGCAATGAAAATGAATGCCGTCATATTCCAGGTTGTTCCCTGCGCAGATGCATTCTATGCATCAGACCTGCTTCCGTGGTCGAAGTACCTGACGGGTACGCTCGGGAAGAATCCCGGCTTCGACCCACTGGCTTATGCTATCGAGCAGGCACATGCTCGCAATATTGAGCTGCACGCATGGGTGAACCCGTACCGCGTATCAATGAACGCCAGCGATGCCACAATCGAAGAGCTGAACAACTCATCATCTGACTCACCGGCCAGTGTGTTTAAAACACATCCTGAATGGACGGGAACCGCAGCGAACCGCTTTGTTCTCAACCCCGGGATACCTGAAGTTCAGACGTGGGTTAGTAATATTGTTGAAGAAATTGTCACTAAATACGATGTTGATGCCATTCAATTCGATGATTATTTTTATTATGAAACTGCCAGCTCGCTGCTGCAGGACGATGCCACCTATCAGAAATACAATACGAACTTTACCACGAAGGCCGACTGGCGGCGGAATAACACTTATTCGCTGGTTGATACATGCCATAAAAAAATAGCCGCCGTAAAAGCGAATGTCTTGTTTGGCGTCAGCCCGGCAGGCGTCTGGCGGAATAAATCTGACGACCCGCTGGGGTCTGATACGCAGGCCGGTGCGTCTAATTACGATTTCGCGTATGCAGACACACGGAAATGGGTCATTGACGGCATCATTGATTATATCGCCCCGCAGGTATACTGGCCGTTTGCTCGTGAGGTTGCGCGTTATGATGTCATCACACAGTGGTGGGCGGATACCGTCAGCGGAACTGGCACAGCGTTATATATTGGTATGGCTCTGTATAAAGTGGGAACGGCATCAGAAACCGAGCCCGACTGGACTGTCGAGGGGGGCGTGCCTGAAATTACCCGTCAGCTTGACCTGAATGATTCTCTGACTGAGGTTTCCGGGTGCATGTTATTTCGACATATGTTTCTGCGGGCCTCACAGACTCAGCAGGTGGTCGACTACCTGAAGCTTCGCTGGGCTGACGTCTAA MATANKNLKATWVATVTNLDWPSVSSVAITDEAARVSKQKEELTGILDEIVAMKMNAVIFQVVPCADAFYASDLLPWSKYLTGTLGKNPGFDPLAYAIEQAHARNIELHAWVNPYRVSMNASDATIEELNNSSSDSPASVFKTHPEWTGTAANRFVLNPGIPEVQTWVSNIVEEIVTKYDVDAIQFDDYFYYETASSLLQDDATYQKYNTNFTTKADWRRNNTYSLVDTCHKKIAAVKANVLFGVSPAGVWRNKSDDPLGSDTQAGASNYDFAYADTRKWVIDGIIDYIAPQVYWPFAREVARYDVITQWWADTVSGTGTALYIGMALYKVGTASETEPDWTVEGGVPEITRQLDLNDSLTEVSGCMLFRHMFLRASQTQQVVDYLKLRWADV similar to GP:17431229, and GP:17982579 ; Unknown Class 3 PF02638 DUF187, Uncharacterised BCR, COG1649.. COG1649 COG1649, Uncharacterized protein conserved in bacteria [Function unknown]. Function unknown NC_004633 Plasmid_pDC3000A PSPTOA0032 NP_808690 29171506 Protein 34203 32908 lsc-3 levansucrase ATGTACAATAGCAACTCTGCTGTAAGCCAGCTCCAAAATAGTCCTCTCGTAGATAACATCAAATACCCACCTACTGTCTGGTCCCGCGCCGATGCGCTGAAGGTCAATGAAAATGACCCGACCACGACGCAGCCACTGGTCAGTGCGGACTTTCCGGTCATGAGTGATACGGTATTCATCTGGGACACCATGCCGCTGCGAGAGCTCGACGGCACGGTGGTTTCGGTCAACGGCTGGTCAGTGATCATCACCCTGACGGCGGACCGCCATCCTGACGACCCTCAGTACCTGGGGCCCGACGGTCGCTATGACATCAAGCGTGACTGGGAAGATCGACATGGCCGCGCACGCATGTGCTACTGGTACTCGCGTACCGGCAAGGACTGGATTTTTGGTGGTCGTGTAATGGCCGAGGGGGTATCGCCCACCACTCGAGAGTGGGCGGGCACACCCATACTGTTGAATGACAAAGGCGATATTGATCTCTATTACACCTGCGTCACGCCCGGCGCAGCGATCGCCAAAGTACGTGGCCGTATTGTGACGTCCGATCAGGGCGTGGAGTTGAAAGACTTTACCCAGGTCAAAAAACTGTTTGAGGCCGACGGCACCTATTATCAAACCGAAGCGCAGAACTCAAGCTGGAACTTTCGCGACCCCAGTCCGTTCATTGATCCTAATGATGGCAAGTTGTATATGGTGTTTGAAGGCAATGTCGCCGGTGAACGCGGTTCGCACACAGTAGGGGTTGCCGAACTTGGCCCTGTGCCACCGGGTCACGAAGACGTGGGGGGTGCCAGATTCCAGGTGGGTTGTATCGGTCTGGCGGTTGCAAAAGATCTCAGTGGCGAAGAGTGGGAAATACTTCCGCCATTGGTGACTGCCGTCGGCGTGAATGATCAGACCGAGCGCCCGCACTATGTTTTTCAAGACGGCAAATATTACTTGTTCACCATCAGTCACAAGTTCACGTATGCCGATGGTGTTACAGGGCCAGACGGGGTGTACGGTTTTGTCGGCGAACATTTGTTCGGTCCGTACCGGCCAATGAACGCTTCCGGCCTGGTGCTCGGCAATCCGCCCGAGCAGCCTTTCCAGACGTATTCGCACTGCGTCATGCCAAACGGTCTGGTAACTTCGTTCATCGACAGCGTGCCCACCACAGGTGAGGATTACCGTATCGGCGGGACCGAAGCGCCGACGGTGAGAATCCTCCTGAAAGGGGATCGCTCGTTCGTGCAGGAAGAATATGACTACGGTTATATCCCTGCGATGAAAGACGTGCAACTGAGCTGA MYNSNSAVSQLQNSPLVDNIKYPPTVWSRADALKVNENDPTTTQPLVSADFPVMSDTVFIWDTMPLRELDGTVVSVNGWSVIITLTADRHPDDPQYLGPDGRYDIKRDWEDRHGRARMCYWYSRTGKDWIFGGRVMAEGVSPTTREWAGTPILLNDKGDIDLYYTCVTPGAAIAKVRGRIVTSDQGVELKDFTQVKKLFEADGTYYQTEAQNSSWNFRDPSPFIDPNDGKLYMVFEGNVAGERGSHTVGVAELGPVPPGHEDVGGARFQVGCIGLAVAKDLSGEEWEILPPLVTAVGVNDQTERPHYVFQDGKYYLFTISHKFTYADGVTGPDGVYGFVGEHLFGPYRPMNASGLVLGNPPEQPFQTYSHCVMPNGLVTSFIDSVPTTGEDYRIGGTEAPTVRILLKGDRSFVQEEYDYGYIPAMKDVQLS similar to GP:4903136, and SP:O68609 ; Extracellular Class 3 PF02435 Glyco_hydro_68, Levansucrase/Invertase. This Pfam family consists of the glycosyl hydrolase 68 family, including several bacterial levansucrase enzymes, and invertase from zymomonas.. NC_004633 Plasmid_pDC3000A PSPTOA0033 NP_808691 29171507 Protein 34296 34694 hypothetical protein ATGATTCAATGTCCCGCAGCGGGGGCACTTGATCTGGAGTTCGGTGTAGTCACCCATGCGAAGCAGCAGCTTCTTGCACTGCCCGCATCTATAGTCTTTCAACACTTGCACTGGTCTCCTTTTGCTTCGCCCAAAGAAAAACCCCGCCTGGGCGGGGTTTGGGTAATCGCAATTTACCGGTCGGTGCTGTTGAAAAGCCCGTATCCGGCGGCTGCCCTGAGGCGCAAATCGCATATCGTGGTGCCTTTTTACCTCCCTCCGGAAAGGCTGGAAAGGGGCAGTTTCGGGGTGGGTCGAGTTTGGCCGGAGTTCAACACCAGTTCGACCACAGTTGCGCCATTGGCCCGGATAAACGGTACGTGTAGCGGCTTGCAATCGAAAACCGCTGGCTCACATTAA MIQCPAAGALDLEFGVVTHAKQQLLALPASIVFQHLHWSPFASPKEKPRLGGVWVIAIYRSVLLKSPYPAAALRRKSHIVVPFYLPPERLERGSFGVGRVWPEFNTSSTTVAPLARINGTCSGLQSKTAGSH identified by Glimmer2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0034 NP_808692 29171508 Protein 36812 34863 GGDEF domain/EAL domain protein ATGCTGAAAAAAATGATGGATGCCTTGCGCACCCTGATGTCCGTGCCCTCCGATAATCCTCGGCTGCTGCAAGCTCAATACATCGCATTGTCCCGACAACTGCCGCTGATGTACTTCGTGCTGTTGGTCAACACCTGGGCGCTTGCCTTTACCCATTGGGCAACTGCCCCGATGTGGCTGACGTTGCTGGTACCGACAGTCCTCACCATCGGGTGCTGCATTCGCGCGCGCAAGTGGCTGCTTACGGTAAACAAGCCGCCGCCAGCTTCAAGCACTATTCTCGAGACGCTGCGCGGCACCAATAGGCTGGTGGGTATCATCTCCACCGCATTTGCGGCATGGTCTTTGTCGATGTACCCCTATGGCGATGCCTATACCCAGGCGCAAGTGGCGTTTTTCATGGGCATCACCGTGATTGTGTGCATTTTCTGCATGATGCATTTGCAGTCTGCAGCCTTGATTACTGCAGTGATCGTCAATACAGCGTTCGTTATTTTCTTCGCCTCAACACACAACATCACGTTTATCGCCACGGCTGCAAATATCGTGCTGGTGTCGATCGGTATGCTGATCATTCTTCGCCATCAGTACCGCGACTTCACCAGCCTGGTGAACGCCCAGTTCAAGACTGAACAACTGAGCAACGCGAACCTGATGTTGGCCAATCGGGATAGCCTGACCGGCCTGCCTAACCGTCGGCATTTTTTCCAGACACTGGATACGGCGATGAACGAGGCACTGCTACAGCGCAGCGGGCTAGCGGTGGGTGTGCTGGATCTGGACGGGTTCAAGCCGGTCAACGATCTTTATGGCCATAGTGTTGGCGACAGGCTGTTGATGCTGGTCGCCGAACGGCTGACCACTGCTGCGAGCGATACCGTGCACGTGTCTAGGCTGGGCGGTGACGAATTCGCGCTGGTCATCAAGGGCGACACCAGTAACGAGGCGTTACTGATGTTCGGCAAGCACCTTTGCACGTTGATGCATGAAAGTTTCGAACTCTCGGAAATACCGATCCAGATCGGCGCGACTCTGGGTTTCGCAACGTATCCAGCTACCGCCGACAATGCTACCCAATTGTTTGAATATGCCGACTACGCCCTTTACCAAGGCAAGAATCACAACCCCGGGTCCACTTGCATATTTTCGGCCAGTCACCGTGAACAACTTAGTGCCGATGGCGTAACCGAGCAGGCATTGCGGCGGGCGAATCTGAAGACGGAGTTTCACGTTTTGTTTCAGCCGATCATTGAAAGCTGTACACGCGAAACAGTGGCTTTCGAGGCGCTGGCACGCTGGGACAGTCCAGTACTCGGCGCGGTATCGCCTGCGCATTTCATTCCGATTGCCGAGCGGATCGGCATGATCAACGAGCTGACCGCCCCTTTGTTAACGCAGGCGCTACAGCGAGCATTGTCCTGGCCGTCGCCGATCAGGCTGTCGTTCAATTTGTCGGCCCATGACTGCGCGACCTGGGAAAGCGTCAAGAGAATTGTCGATATAATCGAAAACAGTGGTTTTGACGCCTCACGACTTGATCTGGAAATCACCGAAACGGCTGTCATGCAGGACATTGACCAGGTTCAACAGGCTATCCTCCGGTTCCGTCAGTTGGGTTGCGGGATTTCCCTTGACGACTTTGGCACCGGTTACACTAGTCTCAGCCAGTTGCACGCCTTGCCGCTGACCAAACTGAAGATTGATCGCAGTTTTGTGAGGTGCGTGCATGACAATCCGGCCAGCTACAAGATCGTCAAGTCGCTGGTGGCCCTAAGCCTGGACATGTCATTAGGATGCGTGATCGAGGGTGTCGAGACGCAGGACGAGCTGAACGCGCTGACGAGTCTGGGCTGCACGATGGTCCAAGGCTACTTCTACAGCCCGCCGATAACGTTCGCCGAAACACTCGTGTGGATTGAGGCGCCGGATGACGAGCGCACGTTTGGTTAG MLKKMMDALRTLMSVPSDNPRLLQAQYIALSRQLPLMYFVLLVNTWALAFTHWATAPMWLTLLVPTVLTIGCCIRARKWLLTVNKPPPASSTILETLRGTNRLVGIISTAFAAWSLSMYPYGDAYTQAQVAFFMGITVIVCIFCMMHLQSAALITAVIVNTAFVIFFASTHNITFIATAANIVLVSIGMLIILRHQYRDFTSLVNAQFKTEQLSNANLMLANRDSLTGLPNRRHFFQTLDTAMNEALLQRSGLAVGVLDLDGFKPVNDLYGHSVGDRLLMLVAERLTTAASDTVHVSRLGGDEFALVIKGDTSNEALLMFGKHLCTLMHESFELSEIPIQIGATLGFATYPATADNATQLFEYADYALYQGKNHNPGSTCIFSASHREQLSADGVTEQALRRANLKTEFHVLFQPIIESCTRETVAFEALARWDSPVLGAVSPAHFIPIAERIGMINELTAPLLTQALQRALSWPSPIRLSFNLSAHDCATWESVKRIVDIIENSGFDASRLDLEITETAVMQDIDQVQQAILRFRQLGCGISLDDFGTGYTSLSQLHALPLTKLKIDRSFVRCVHDNPASYKIVKSLVALSLDMSLGCVIEGVETQDELNALTSLGCTMVQGYFYSPPITFAETLVWIEAPDDERTFG similar to GP:17865161 ; Cytoplasmic Membrane Class 3 TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain No data 8.9e-30 No data No data PF00563PF00990 EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site..GGDEF, GGDEF domain. This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain and has diguanylate cyclase activity. This observation correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate.. COG5001 COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]. Signal transduction mechanisms NC_004633 Plasmid_pDC3000A PSPTOA0035 NP_808693 29171509 Protein 37434 38135 transcriptional regulator, GntR family ATGCTTAGCTTTCCACGTCCTCACTCCCTCGTCGAAGGTGTCGTCTCTGCGATCCGCAGAGAGATTGTGAGTGGACGGCTCCCTGCAGAGTCGAAGATGCCGACAGAGCATGAGTTAGCTGATCAATTCAGTGTGAGCCGGTCCGTGGTACGTGAGGCCATTTCGCAGCTGAAAGCTGACGGCGTTCTAGTTATTCGTCGTGGCAGCGGTTCATTTGTTTCTCAGACTCCTGGTGGAACGGTCTTCCGGCTGCCAGGCAACGAGGACCATTCGGCTGGCTTAGCTAAACTATTTGAATTGCGCTCATGGATTGAAATACAAGTTGCGTCTGTTGCTGCGCAGCGGCATACAGATGCAGATTTGAAGCGGCTGTCTGACGCCATGTTGTTGATGGAGAGTAACGCGGGAAATTTCGAGATATCCTCCAAGGCAGATTGTGAATTTCACTGCGCCATCGTAGCTGCGTGCAAAAACGAATATCTGACTGCCTTCCATGACTTCTTAGGCAGCCAGTTAATCCAGGCTCGTTTCATGGCTTGGGAAAACTCCTCAAAACTTGAAATAGGTCCAAGTGGTGCCATCCGTGAACACCGTGAAATCTTCGACGCAATAGCAAAACGAAATCCCTCTGAAGCCGCTCATTGTGCCCGCATGCATCTCAAGGCTGCCGCGCTACGGCTCAATATCGATCTGGCGGATTAG MLSFPRPHSLVEGVVSAIRREIVSGRLPAESKMPTEHELADQFSVSRSVVREAISQLKADGVLVIRRGSGSFVSQTPGGTVFRLPGNEDHSAGLAKLFELRSWIEIQVASVAAQRHTDADLKRLSDAMLLMESNAGNFEISSKADCEFHCAIVAACKNEYLTAFHDFLGSQLIQARFMAWENSSKLEIGPSGAIREHREIFDAIAKRNPSEAAHCARMHLKAAALRLNIDLAD identified by match to PFAM protein family HMM PF00392 ; Cytoplasmic Class 3 PF07729PF00392 FCD, FCD domain. This domain is the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain pfam00392. This domain is found in proteins that are regulators of sugar biosynthesis operons. It is also in the known structure of FadR where it binds to acyl-coA, the domain is alpha helical. This family has been named as FCD for (FadR C-terminal Domain)..GntR, Bacterial regulatory proteins, gntR family. This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins can be divided into six sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships.. COG2186 FadR, Transcriptional regulators [Transcription]. Transcription NC_004633 Plasmid_pDC3000A PSPTOA0036 NP_808694 29171510 Protein 38204 39397 hypothetical protein ATGATCTACGATTTCTGTGTGATTGGAGGGGGAATCGTTGGGCTTGCCACGGCGATGCGGCTGCTTGAGGTCTACCCTGGCTGTTCGCTTGTGTTGATGGAGAAAGAGCTTTCACTCGCACAGCATCAGACAGGCCATAACAGCGGAGTGATACATGCTGGGGTTTATTACGCCCCAGGCAGCTTTAAAGCTAAGCTCTGCGCGCGCGGTGCAGAGCTCACGAAATCGTTTTGCACCGAACACAGTATTCCTTACGAAGTGTGCGGAAAATTGGTGGTTGCATCAAACAAGGATAGCCTCGCCAGATTGGGATCGCTTGAAGAGCGGGCAAAGCAAAATGGCCTTGCCACAGAACGCCTTGATGCCCTAGAGCTACGGCGGCGCGAACCCAATGTCGCCGGGGAGGGCGCGTTGTTTGTAAAAAGCTCAGGGATCGTTGATTACGGTGTTGTGTCTAATTCCATGGCCAATGTGATCATCCAGTCTGGAGGGCAAATACTTCTGGGCCAAACAGTCGTCTCTATAGAAGAACATGGAAACCATGTAAACATTGCGTCTGAGGGTTCGTCGTTGTCTGCAAAAAAACTGGTGGTCTGCGCGGGTTTACAATCTGATCGCCTGGCAACGCTTGCGGGCTTGAAATTGGACTGCCAGATTGTTCCATTCAGAGGTGAGTATTATCGGCTGTCTTCACATCTTGATTACAGTGTAAAGCACCTAATATATCCGGTTCCTGAGGTCGGGCTACCGTTTCTGGGCATACATATAACTCGAATGATCAATGGAGGCGTTACGGTTGGGCCCAATGCCGTATTGGGGCTATCAAGAGAAGGGTATAGCAAGTTCTCATTCAATGCGCGTGATTTTTTAGAATATAGTTCGTACCCTGGATTTTGGAAGCTCATTGGGAAAAACATTAGCTCTGGCATTGCTGAAATGAGAAATGCACTTTTCAAAAAGAGTTATTTAGAGCAGTGCCAAAAATACTATCCATCGCTTAAGTTGGAGGACCTTGAACCGTATGAGGCAGGCATTCGTGCTCAGGCGGTAACACGTTCAGGCGAGTTTGTAGACGACTTTCTGTTCGTACAGACAGAAAGAATGTTGCATGTGTGCAACGCGCCATCCCCAGCAGCTACGTCAGCCATTCCGATAGGTCAAATTATTGTAGATAAGCTTACGAAGAATTGCTGA MIYDFCVIGGGIVGLATAMRLLEVYPGCSLVLMEKELSLAQHQTGHNSGVIHAGVYYAPGSFKAKLCARGAELTKSFCTEHSIPYEVCGKLVVASNKDSLARLGSLEERAKQNGLATERLDALELRRREPNVAGEGALFVKSSGIVDYGVVSNSMANVIIQSGGQILLGQTVVSIEEHGNHVNIASEGSSLSAKKLVVCAGLQSDRLATLAGLKLDCQIVPFRGEYYRLSSHLDYSVKHLIYPVPEVGLPFLGIHITRMINGGVTVGPNAVLGLSREGYSKFSFNARDFLEYSSYPGFWKLIGKNISSGIAEMRNALFKKSYLEQCQKYYPSLKLEDLEPYEAGIRAQAVTRSGEFVDDFLFVQTERMLHVCNAPSPAATSAIPIGQIIVDKLTKNC similar to GP:13926144, and GP:13926145 ; Unknown Class 3 PF01266PF06039 DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1..Mqo, Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidises L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.. COG0579 COG0579, Predicted dehydrogenase [General function prediction only]. General function prediction only NC_004633 Plasmid_pDC3000A PSPTOA0037 NP_808695 29171511 Protein 39438 40784 major facilitator family transporter ATGAGCGATGTAACGGATTTGCCTTGTAGTGAAAGTTCAGGTCAGCGAAAAGCTCGGCTGCGCAGGGTTGCTGGAGCAACAATAATTGGCTCAATGTTGGAATGGTACGATTTTTATCTGTATGCAATGATGGCTGCAACGGTTTTTGCGAAAGTTTTTTTTGACCCTAGCGATCCCCAAACGGCAACGCTTATGGCATTTTCAACGTTCGCAATTGGATTCATAGCGCGGCCATTTGGTGGCGTAATATTCGGGCATTTGGGCGATAAGTTCGGTCGCAAGCGAATGCTGATGGTGACGTTTTGCCTGATGGGCATTTGTACGACTGCAATCGGCCTGGTTCCTGGGTATGCCACGATGGGCATCTGGGCTCCAATTCTGCTGGTGCTGATTCGAATTCTCCAAGGCCTTGGTGCCGGTGCTGAACTTGCTGCTGCAGCGGTGACTGCATATGAACATGCTGAAGAAAATAAGCGTGGAAGCCAAGGAGCGTGGCCCGCGCTAGGATTGAACCTGGGTCTGCTTCTCTCATCCCTGACGGTCTATCTCCTTACGATGCCAGGAGAAGAGTTTCTCATTGAGGGAGGTTGGAGAGTACCGTTTATTGGCAGCATCGTTTTAGTTTTGGTTGGTATGTGGGTACGAAACAGCATCCCTGAAACGATTGCATTCCAAGAGATAAGTAATGCGAAGCAAGCTCAAGGTTCATCGGAGATAGGAATAGCAAAAACACCTCTGTTGGCCTTGCTGAAGAAAGATTTTAAAGGTCTAGTAGTCGTGCTTCTTGTTGCAATTGGGTACAACGCACTCAGCTATATATTCAAAACATTTTCACTTGCTTATCTCACTTTGTACAAAGGTGTGTCTGCAAACACTACATCACTTTCGGTAACTATTGCCAGTCTAATAGCAATCTTCACTGTCCCCTGCTTTGGAGCTTTGTGTGACCGTTGGAGCAGCAAAAAGGTGTTGATGGCCGGGGGAGTTCTGTCAGCCATATTTGCATACATCTTCATGCAGCTTCTTGAGACGGGCCAGAACCTATGGATATTCATTGCAATTGGCCTTGCGACTGGTGTGCTGGCTCCGATGATGTTTGCCCCGCAAGGCTCTTTCTTGAGTCGTCAATTCCCTACGCATACAAGGTCTTCAGGCGTAGGCACAGGCCGTGAGATCGGAACTGCAATTGCTGGTGGTTTAGCACCGCTTGGAGCGTTGTCGCTGGTTTCAAACTCACCCAAGCACTCTACAATTGGCGTCGTATGGATTTTAATATTGTCGGCAGTCTTGCTTGTTGTGGCTAGTGCTTTTGATCAGGGTGGAAAGAACTCCAGCTTCAAAAATTGA MSDVTDLPCSESSGQRKARLRRVAGATIIGSMLEWYDFYLYAMMAATVFAKVFFDPSDPQTATLMAFSTFAIGFIARPFGGVIFGHLGDKFGRKRMLMVTFCLMGICTTAIGLVPGYATMGIWAPILLVLIRILQGLGAGAELAAAAVTAYEHAEENKRGSQGAWPALGLNLGLLLSSLTVYLLTMPGEEFLIEGGWRVPFIGSIVLVLVGMWVRNSIPETIAFQEISNAKQAQGSSEIGIAKTPLLALLKKDFKGLVVVLLVAIGYNALSYIFKTFSLAYLTLYKGVSANTTSLSVTIASLIAIFTVPCFGALCDRWSSKKVLMAGGVLSAIFAYIFMQLLETGQNLWIFIAIGLATGVLAPMMFAPQGSFLSRQFPTHTRSSGVGTGREIGTAIAGGLAPLGALSLVSNSPKHSTIGVVWILILSAVLLVVASAFDQGGKNSSFKN similar to GP:13926146 ; Cytoplasmic Membrane Class 3 TIGR00883 2A0106 metabolite:proton symporter family protein subfamily 3.8e-130 Transport and binding proteins Unknown substrate PF00083PF07690 Sugar_tr, Sugar (and other) transporter..MFS_1, Major Facilitator Superfamily.. COG2814 AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]. Carbohydrate transport and metabolism NC_004633 Plasmid_pDC3000A PSPTOA0038 NP_808696 29171512 Protein 40825 41010 hypothetical protein ATGCTAATCCAAAAAGATAAAGTTCGAGTCGAAATCAAAGAATTGATTGACCTGATTCGGCTGGACGAAAAATATGCGTCCTTAGCTGCTGATCGTGTGCTTCCAGTCGATCAACAGGCTTTACAGTTCCATTGTAAGCGTAGAAGTCGTATTGAGGAAATAACCCGTAAGTATGGATTAGATTGA MLIQKDKVRVEIKELIDLIRLDEKYASLAADRVLPVDQQALQFHCKRRSRIEEITRKYGLD similar to GP:13926145 ; Cytoplasmic Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0039 NP_808697 29171513 Protein 41367 41032 transcriptional regulator, PbsX family GTGGTCGGGGCAAAAATAAAGGCCCTCCGCAAGTCGACAACCCTGAGCCAAGCTGATTTGGCAGAAATGATAGGGTGCGATGCGCCGTTGGTAAGTCGATACGAAAGAGGTTCTACGCTTCCAGGTATTGAGCAATTGATAAGAATCGCTACAGTTTTCAACGTCGCACCAGGAGAGCTTCTACCTGGTGGCCAAGATGTATTACGAACACGGCTGCTTTCGCTTCGACAAGAAATCACAGAACGCATCGCTGAAGTCGATTCGCCAGAATATTTGGAAGAAATGCTTAACTTCATTAACAGATACCCGCAGTACGATAATAAAAATAAGAAATGA MVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELLPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNFINRYPQYDNKNKK similar to GP:13926146, and SP:P23789 ; Cytoplasmic Class 3 PF01381 HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI.. COG1396 HipB, Predicted transcriptional regulators [Transcription]. Transcription NC_004633 Plasmid_pDC3000A PSPTOA0040 NP_808698 29171514 Protein 41631 42164 hypothetical protein ATGAAAAATTGGCGTGTTTTGATGCACAATTCTTCCGTTTATCAGTCGCTTATCACGTCGATCGAACGATTGGATGTGGAGGTGTATTCCCCCGAAAGCATTACCTACCGCAAACGTCCTGATCGCCCTTCATCGACAGAGAAGGTGGTGCGTTTGTTTCCTGGCTATCTGCTGCTGCGCTTCGATCCCCAAGTGACGCACACCACCACCATCACAGCGTTGAACGGCGCCCGTGGGTTTGTTCAGTTTGGCGGTCAAACGTGTGAGTTCGGCGGTCAAGCGTGTGTCATGCAGGACAGCACAGTAGAGGGCTTGAAGGCAGCGGCTTTGGTTCGTTCCAACCGTGCGCTTGATTGCGTCGAGTTTCGTAATTTGCCGACAGAGCTGGAAAAAACGCTGCGTCTGATCATCGACATGAAATCTGAAGCTGCGCGTAGAGCGGCTTTCCTTGCGCTCCTGGCCCAGGACGCAGCGCTGGAGCGCCTTGTCAGGCGCCACGGAACCCTTTGCTATTCGAGGGTACGTGCCGCCTAG MKNWRVLMHNSSVYQSLITSIERLDVEVYSPESITYRKRPDRPSSTEKVVRLFPGYLLLRFDPQVTHTTTITALNGARGFVQFGGQTCEFGGQACVMQDSTVEGLKAAALVRSNRALDCVEFRNLPTELEKTLRLIIDMKSEAARRAAFLALLAQDAALERLVRRHGTLCYSRVRAA similar to GP:13926148, and GP:12053565 ; Cytoplasmic Class 3 PF02357 NusG, Transcription termination factor nusG.. NC_004633 Plasmid_pDC3000A PSPTOA0041 NP_808699 29171515 Protein 42480 42752 lipoprotein, putative ATGCAAAAGAGACTCCTTTTTTCCGTGCTGCTCATCTCTCTGTCAGGGTGCAGCCAGCCGACGGCCCAGTTCGCACAGGAACCGGCGGGGGAACGGGTGGATGAGCTGATCCGACAGAGCGCTTCTTCGGTGAGCCAGGCGCAGAGCCGGTTGCACCAGACCAGCGCTGTTCCTTCCTTTGCTCCCGTGTCAGCACAGGTCAAACCGACCGCTAAAGCACAGGCTCCCGCAGTCAAAGCTCCCGTCAGGCCTGTGCCTGTTGCTGGGGGTTAG MQKRLLFSVLLISLSGCSQPTAQFAQEPAGERVDELIRQSASSVSQAQSRLHQTSAVPSFAPVSAQVKPTAKAQAPAVKAPVRPVPVAGG similar to GP:12750993 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0042 NP_808700 29171516 Protein 42755 43246 pilT pilT protein ATGCGCTGCCTATGGCTGGTTTTGGCATTGTCGGCGCCGATGCAGGCCTCTGCTTTCTGCTTCCAGGAGGCTGGCCAGCGCTATGGAGTTGATCCGGTGCTACTGCAAGCGATCGGCATACAGGAAAGTAAACTGCAGCCTGGTGCAGTGAACCTTAACCGCGATTCGTCTGGAAAAGTGCTCAGCACCGACTACGGCGTCATGCAGATCAGCACGCGCAACGCTAACCGGCTGGTCAGGATGGGACTGATCACGCGAGCGGAGGACCTGCTCACCAACGCCTGCTTTAACGTTCAGGCGGGGGCTTGGGTACTGGCTCAACATCTTCGTGTGTGCGGCAATACCTGGCGTTGCCTAGGTTCGTATAACGCAGGCTTTGACCCTTCGCAACGCCAGGAGCAACGGCGCCTGCATTACGCGCAGCAAGTGCGCAACGTCTACGACCGCCTCAAAGCATTGGGCGCTGCACCGGCCCACCTCGCTATCCGTTAA MRCLWLVLALSAPMQASAFCFQEAGQRYGVDPVLLQAIGIQESKLQPGAVNLNRDSSGKVLSTDYGVMQISTRNANRLVRMGLITRAEDLLTNACFNVQAGAWVLAQHLRVCGNTWRCLGSYNAGFDPSQRQEQRRLHYAQQVRNVYDRLKALGAAPAHLAIR similar to GP:4512530 ; Unknown Class 3 PF01464 SLT, Transglycosylase SLT domain. This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems (reviewed in ).. COG0741 MltE, Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]. Cell envelope biogenesis, outer membrane NC_004633 Plasmid_pDC3000A PSPTOA0043 NP_808701 29171517 Protein 43283 43756 traH protein, putative ATGAAATACTCCCTTTGGGCTGCGCCGGCGGCGGCATTGCTGCTGTCTGGCTGCCAGAGTTTTTGTGAGAAGCCGCCGGCGGCTCCTACGCCTTCTGCGACAGCTGCGCCGGTACTTGATCGGGTTGCGTTACAGCAAGAAACGCTGTGGATGGAAGGTGCGATAAATACCCGGTCAACCCTGCCGACCGATGCTATCCGTGCTCGGAGCGACCTGGTCGCGGTTGACTGGAGCGGTGACGCGATTGAGCTGCTGTCCCATCTGGCCCGCCAGCGCGGTCAGACGTTTGCCTGGACCGGCGTGCGCCTGCCCTTGCCGGTGAACCTCAAGGTCAATGGAATCTCCTATGCGAATCTGTTGCGTCTGATCGAGATGCAAACAGCCTGGCGTGCGACCCTGACCCAGCTTCCAGGGCAACTGACCCTGGCCTTTGCGCAGGCGGAGCCTACCAAGAAGGCGGGAGGGCGTCAGTGA MKYSLWAAPAAALLLSGCQSFCEKPPAAPTPSATAAPVLDRVALQQETLWMEGAINTRSTLPTDAIRARSDLVAVDWSGDAIELLSHLARQRGQTFAWTGVRLPLPVNLKVNGISYANLLRLIEMQTAWRATLTQLPGQLTLAFAQAEPTKKAGGRQ similar to GP:20521608 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0044 NP_808702 29171518 Protein 43753 44553 traI relaxase GTGAAAAAATCAATTCTGACGCTTGTCCTGTTGCAGGGCCTGCAAGGGTGTGGACATACGCCACCTTCCACACCCGCCGACACGCCGGCGCCACTGGAAAGCTATCTTGTCCCCGCTGACCCGCCGTCAGCAGACGTGACCGAATCGCGGCGACAACTGCTGGAGGAATCGGGACGCAATACAGGGTTTCGTGGCGGTAAGGCTGAGCGCGTGTGGGAATTACGCCAGGCATTGGAGGGGCAGATCGGACGGCTCAACACCTTGTATGACTTTCGGACCCTGATCAGCCGTGAGGGCTGGCTACCGCCAGTCATCGACGAGGCGGTGGACGTGGCCCATATCACGCCACGGCAGATACGCACTGCAAGCCATGTTTACGAAATCATTGTGCCCGAACGGTTCGTCAGTAACCCACCGTCGTGGCGTACCTGGTTGATGGCGGGCCTGTCATCGTCGGGCCCTGATGAAACCGTGGCAGTCACACCTGAAAACCGTTTGCAGAAGGCGCTTTGGCAAGCGGCGGTCCGCCAGGGCTGGGGTGAAGGGCGGCAAAGTGCCGATCAGACCCTTGAAGCCAATTTCAACCGCCTGACCCGAGATTACCGGGGCATGCTGATGTACTCGCAGTTACTGCGCCAGGGGTTCATCACGGCGCCGGTAGTCACGGATCAACAGCAGACCGTGACGGGGGATCGGCAGAAGCTGACCACCGGCGATCGCGTACGAAGCCTCAAGGAGAACGCCGGCTTTGTTCCCGACAAAACTCAGTGGCATCCGGTGATACGCAAGGTGCAGCCATGA MKKSILTLVLLQGLQGCGHTPPSTPADTPAPLESYLVPADPPSADVTESRRQLLEESGRNTGFRGGKAERVWELRQALEGQIGRLNTLYDFRTLISREGWLPPVIDEAVDVAHITPRQIRTASHVYEIIVPERFVSNPPSWRTWLMAGLSSSGPDETVAVTPENRLQKALWQAAVRQGWGEGRQSADQTLEANFNRLTRDYRGMLMYSQLLRQGFITAPVVTDQQQTVTGDRQKLTTGDRVRSLKENAGFVPDKTQWHPVIRKVQP similar to GP:4903109 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0045 NP_808703 29171519 Protein 44550 45731 type IV pilus biogenesis protein ATGACCCAGACGGCCCAGACAATGGAGTTTGCCCCCTACGCTTTTGAAGACGGGCTGAATGCAGACACCTTGCGCGATTTTTTCGTCTGGTGTGAACGGCAGTCAGCCAGCGACATTCACATCCAGGGCGGTAACCACCTGGTGGTAGGGCATCAAGGTCGCTTGCGCCAGGCCAGCCGGTTTGTGCTGGCTGACGATACGTGGTCCAAGCTCCTCGATGATCTGTTCAGCCCTGAAATCCGGCCGACGGTACGCGGTGGTCGGCCTGTAGACCGGGCCATACAGCTGGATGGCGACATCAACCAGCGCTACGGCCTGGAGCGTGGCGAGCGATTACGCTTTCGCTGCAACTTTGTGCAGGCCACTGCTGGGCGACTGGACACCACCATCGCACTGACGATGCGGATCATTCCATCTGATATCCCGGATCTAACAAAGATGGGGCTGGAAGAGGATCTGTTCGAAGCGTTGTTGCCGTCCAATGGTCTAGGACTCATTGGTGGAATCACGGGGTCGGGTAAAAGTACCCAGGCGGCCGCTATCTACCGCTTTTGCCTGGACACCGATCCTGACCGCAAGGTGACCACGATCGAAGACCCGATCGAATTCATTCTCGCGCGTCCAGGGGATGTATTGGCCTCGACGCAACTGCAGATAGGTCGAGACGTTGCCAACTATGCCGAAGGCATTCGGGCAGATCTTCGCCGGGCACCGTCGATCATCGGGGTGGGTGAAATGCGGGATTTGGAAACCTTCCAGGCGGCCGTTTTGGCCGGACAGGTGGGCCATTTCAATCTCAGCACCTTGCACATCCATTCGCCTGGAGAGGCCATTCCACGGTGCCTGACCATGGTGCCCTCGGAAATGCGCGAGGCTACGGCCCACGATCTACTGAGCGTTCTGCAATACATCATCGTGCAAAAGCTGCTGCGCACCACCGATGGCAAGCGCCAGGCCGTGCGCGAATACATCATCTTCGATGATGGGCTGCGCGCCAAGCTGGCCAGCATGCCTTATCCCGAATGGGGTCGGCATATCGACTCCATTATTCGCCTGGAGCAACGACGCTTCGCTGATCAGGCCTGGCGTCTTCATCTGGAAGGGCGCATTGACCGGCGTGAACTGGCGGTGGCCATGACCGCCTCTCAATTGCGGGAACTCGAACAGCGGGCAAAGCCATGA MTQTAQTMEFAPYAFEDGLNADTLRDFFVWCERQSASDIHIQGGNHLVVGHQGRLRQASRFVLADDTWSKLLDDLFSPEIRPTVRGGRPVDRAIQLDGDINQRYGLERGERLRFRCNFVQATAGRLDTTIALTMRIIPSDIPDLTKMGLEEDLFEALLPSNGLGLIGGITGSGKSTQAAAIYRFCLDTDPDRKVTTIEDPIEFILARPGDVLASTQLQIGRDVANYAEGIRADLRRAPSIIGVGEMRDLETFQAAVLAGQVGHFNLSTLHIHSPGEAIPRCLTMVPSEMREATAHDLLSVLQYIIVQKLLRTTDGKRQAVREYIIFDDGLRAKLASMPYPEWGRHIDSIIRLEQRRFADQAWRLHLEGRIDRRELAVAMTASQLRELEQRAKP similar to GP:4512517 ; Cytoplasmic Class 3 GO:0043107 ; TIGR01420 pilT_fam twitching motility protein subfamily 9.1e-20 Cellular processes Chemotaxis and motility PF00437 GSPII_E, Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.. COG2805 PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]. Cell motility and secretion / Intracellular trafficking and secretion NC_004633 Plasmid_pDC3000A PSPTOA0046 NP_808704 29171520 Protein 46304 46513 hypothetical protein ATGTTGTGCCGCCAGGACAAGACCGACACAGCAATAGACGCCGGTGCCATGCGTGATGCAAACGAATGGCTCAAGGTTGCCGCTGAAAATCTCGGTGCAGCCCTGTGCAAGCCTGCCAAGAGGGGCCACGCCATGACTGAGCCTTTGGTGCAACAAGCACAAGCGCATCGAGAAGTACCCAGCGCTCTTGAACAGAGTGCCGAGTCATGA MLCRQDKTDTAIDAGAMRDANEWLKVAAENLGAALCKPAKRGHAMTEPLVQQAQAHREVPSALEQSAES identified by Glimmer2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0047 NP_808705 29171521 Protein 46510 47061 endonuclease ATGACTGCCCTATCGGCGTTAACCAGACCGCTCAGTCGTGGGCTGCTGGCCTCGGTGCTGCTGTGCAATCTGTCCTTTACCGTTCAGGCGGCGGAAATACAGGTGGGTTTTTCACCCGAGGGCAGCGCGGAGCAGTTGGTACTCAATGTGATCCAGCGAGCCCGGCAGCAGATACGGCTGATGGCCTACAGCTTCACCTCTCCGAGCGTAGTCAAGGCGTTGGTGCAAGCCAAACGGCGCGGCGTCGATGTACAGGTGGTGGTCGATGCCCATGGCAACGACAACAGGGCCAGTCGCGCTGCGATGAACCTGCTGGCCAACGCGCAAATCCCTGTGCGCACCAACGGGGTGTACAAGATTCAGCACGACAAGGTGATCATCACCGATGGCCAGAACGTCGAGACCGGCTCGTTCAACTACTCGGCCTCCGCTGCCAAGGCCAACAGCGAAAATGCGGTGGTGATGTGGGACGTTCCTGCGGTGGCCAGCGTGTACCTGGAGCATTGGCAATCACGCTGGGTACAGGGCCAGCCTTATCAGCCGACTTACTGA MTALSALTRPLSRGLLASVLLCNLSFTVQAAEIQVGFSPEGSAEQLVLNVIQRARQQIRLMAYSFTSPSVVKALVQAKRRGVDVQVVVDAHGNDNRASRAAMNLLANAQIPVRTNGVYKIQHDKVIITDGQNVETGSFNYSASAAKANSENAVVMWDVPAVASVYLEHWQSRWVQGQPYQPTY similar to GP:498885 ; Unknown Class 3 PF07894 DUF1669, Protein of unknown function (DUF1669). This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.. COG1502 Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism]. Lipid metabolism NC_004633 Plasmid_pDC3000A PSPTOA0048 NP_808706 29171522 Protein 47372 47659 traK-2 traK protein ATGTCTGACCAGCAACTGCAACCGGGATATTGGCGCGACGCCTCACGCCTTCTCAATCTCTACGGCATACCAGCCCCCTTGTTCTTGTTGTACCTGGCGTGGTTTCGCTTCCCCAGCATGATCACGCTCTGCGTCATCACCGCCATTATTTGCGGCTTTCGGCTGCTCTCGTCCTTTGGATGGACGTTCCAGGTCCTGGTGATGCGACTGGCTTACCTGATGCGCGGCAAGCGCATGTCCGGTCGGCCCTGGTGGTATCGACGCTTTACCGAAAGGGGGGAGCGATGA MSDQQLQPGYWRDASRLLNLYGIPAPLFLLYLAWFRFPSMITLCVITAIICGFRLLSSFGWTFQVLVMRLAYLMRGKRMSGRPWWYRRFTERGER similar to GP:4512515, and GP:4903111 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0049 NP_808707 29171523 Protein 47811 51980 DNA primase, putative ATGAAGATTGAAACAGCCCCTCGCACATCCGAATACCCGGTCTGGTTGGCAGTGCCGCCTGACGATCGTGAAAAAGCACGTCTGTCTGCTGGACGACTCAGTGACGGTCGTGCGGCTATTGCCTGGAACAAAGAAGAAAAGCTTTGGTTTGCCAGACCTGGATGTGACCTTGATCGCATCACCGCCTGGTTGCCTGATCCAAGCCGCCGTGCCGGTGGTGGTGACGCCGAATCAGAGTTTCTAGATGTACTGACTCAAGCCGGCCTGGTGGTCAAAGGCATGCCGGTGATGGACGGTAGTCGGCAGCGTGTCGCGACGGTCGATGACAAGCACGGCAAGAAAAGCGGCGTCTATTGTGGCTTTCTGGATCGTCGCCCTGCAGGCTGGTTCATCAACTACCACCGTGCCGATTCGCCCAAGGATGTAACCAACTGGGCGGCGACTGGCGGTGAATCTGATCCGATCACCCGCCTGCACATTCGGGCCGGGGCCAAGCAAGCCCAGGAAGACGCCGCTCGTGATCGCGCTGTTACCTACGCCAAGCAGACGTTGGCTGCCAAGAGACTTTACGACCGGCTGCCCGCCGCAGACCCTGCGCACCCCTACCTGGTGCGGAAGGGAATACCCCCGACGCCCGACATTCGTCAAACACGAAACGGTGCCCTGGTGGTGCCGTTTTTTAATGCCTCGGGAACGTTCAAGACGCTGCAGTACATCCCACCCGAGGGTGAGAAGTTCCTCTTCAAGGATGCCCCCAAACAAGAGCATTTCCTGGTGGTGGGCGGCTCGCTCGATCCGGTCAACCCCATCCTGTATGCCGAGGGCTATGCCACTGCGCGCAGCCTGAACCTGGCCACCGGCCTGCCGGTGGTGATGACCATTGACGCCGGCAACATGGTGGCGGTGGCCAAGGTGCTGCATCAGCAGTATCCCGACAGTCGGCACCTGTTCATGGCGGATTTCGATCATGCCAAGGACGTGAACAAGGGGTTGATCATGGCCAATGAGGCGGCCATAGCGGTGGGGGGCCAGGTTCTGTATCCAACGTTCAACGACGCCGAAATTGCCCGTGGGTTCACGGACTTCAACGACCTTCACCAATCACGAGGACTGGACGCGGTGCGCGAACAGACCGCTCCCCTGATTCGACCGTATGAAGAGGTAACTACCATGCCGACAGATTCGAACACTCAGTCTCCGGACAATACTGCGCAAAAGGTAGCAACTCCCGCGCAAGAAACGCTGGAACTGGATGCAGCGCCTGCAGCTTCAATACAGGTCCCGGATCAATCCGCACCGCCGCAGACCCGTAGTGCTCAACCGGTTGCATCTGAAGCGTCATCTGTTGAAAGCCAGTCGCCCGAAACTGCCCAGGTCACTGAAGCACCTGTTGGCATTGATGATGCGCAGGTATCCACCCAGCCACCTTTGGCGTTGTCACCTGCTGAGCAACTGGCGTCGGTAGAGGCCGATCCTGACGCTTCCGCGATCGTTGACGAACAGCCCAAAGCGACAATGTCTGTGGCGACAGACCGCAACACGCCGTCTGACGCGCCTGAACTCACCCAGCCTACCTCGGCGGAGGTCGTGCCAGAGCAGTCTAACGAAACCGCTCAACCAGATGCGCGCTCTGCTCAACAACAGGCACCGGGAGAGGCCGACCCAGGCTCTTCTGCCAACGTGGATGATCAGAAGAGGGCGGCACCACCTGCGGCGACAGACCAAGAAATGTCCTCTGACGCGCCTGTACTCAACCAGCCACCTTTGGCGGCGGCCGAGCCAGAGCAGTCGAACGAGACTGCTCAACAACAGGCACCGGGAGAGGCCGACCCAGGCTCTTCTGCCAACTTGGATGATCAGAAGAGGGCGGCACCACCTGCGGCGACAGACCAAGAAATGTCCTCTGACGCGCCTGTACTCAACCAGCCACCTTTGGCGGCGGCCGAGCCAGAGCAGTCGAACGAGACTGCTCAACAACAGGCACCGGGAGAGGCCGACCCAGGCTCTTCTGCCAACGTGGATGATCAGAAGAGGGCGGCACCACCTGCGGCGACAGACCAAGAAATGTCCTCCGACGCGCCTGTACTCAACCGGCCACCTTTGGCGGCGGCCGAGCCAGAGCAGTCGAACGAGACCGCTCAACCAGCTGCGCCTCCTGCTAAACAACAGGCGTCAGTAGAGGCTGATCCTGACACTTCCCCCGTCGCTGAGGATCAACCGATAATCGCACCGGCAGGGCCTGCTCAAAACGAAGACAATGAAAGCCTTTCAGACGTGGAGGTTCCGGTGTCAGGGGCCCTGCCGCGTCGTTTCACCACAGCACGCAAGACCGGCCCGGCGGTCGTACCGGATGCTATCTTCGTAGGGGCTCCGATAGGTGCCGACGAGCCACAACTGCAAGCCAGCAACATCGACAAAGACGCTCTGTTGGCCCGCATCAGCCGTGAGGTTCAAGGTGACAATTCGGTGCTCTACAAGCTCGATGCCGAGCCTGCTTTCGTTGACCGTGGGTCGCGCCTGGAGATGGTCCAAGGCGCAGGTCAGGAAGATGAGAAGGTAATAGCTGCGTTGCTCACGGCAGCACAGTTCTACCGGGGGCGCATCGAACTGACCGGCAGTGACGAATTCAAGGCAAAAGCCATCGAGCTGATTGCTCAGCACCAGATCAATGTGGAGATGAAGAACCCTGCGCAGCAAATGTTGCTGGACGATGCCCGTAACGCGTTGAAGCAGCCACCTGTAACGCTTGATGCCATTCATGGTGATACCCCACCGCCGTATGGTGGTCCACAGCCGTCACAGGCGAAGCCCTCGGCACCGCAACCTCAACAAGCCGCGCCGGCACCGGTGCATTCGTCTGCGCCCGCGCCGGCGAGTACCGCTTACCAGCCTCTGGAGGTTGAGGGTCTGCAACGGCGGCCGGCTCAATCTGCCCCACAGGCACAGGCCCCGCAAGCGGGCGTTGCACCGCAACCTCAACAAGCCGCGCCGGTACATTCGTCTGCGCCCGCTTCGGCAAGTACTGCTTATCAGCCGCTGGACGTTGAGGGTCTGCAGCGGCCACTGGTTCAACCTGCACCACCGGCACAGCCGGACGCACCGGTCATCAATCCGCCCTCGGCAGCTCCAGCATCGGATCAGCCTGCAACGTCAGCGAATCAGCAGGTGTCGCCCGCCATCCATCAGCCTTTCCAGGCGGCCAAGGATGGCGTGACAGGCAAGATCCTCAAATTTGGCCAGAAGCCGTTTCGTTTTGAGCCAGACAAGCCCGAGAGCACCTTCATCACACTGCGTACCGTGAACGGTGTTCAGACTTTTTGGGGCAAGGAGCTGGCGGGGCTGCTGCGCCAAACCCGTGTGCAGCCAGGCAAGATGGTGACGTTGCAGTGGCTGGGCAATCATCCGGTTACCGTCAAGGTGCCCCGCAAAAACGAGCAGGGCGTCACCGTGGGTTACGACGATAAAGACGTTCATCGCAACCAATGGGCCCTTAAGGTAGAGGGTAACCCCGCAGTGCGTTCTGGCCAGGATGAGGGCGTCAAACTCGGCGCCTATGACGCCGGGCGTTTCGCCGTGGTGCAACAAGCCTGGCTTGCGCAACTGGGCGTGGAGGCTCCCTTGCCCACGCCACCCACGGATGGCCTGTATTGGTTGACCCCAAACGGTGAAGGCAGCGCAAAAACGGGTGATGAGCTGTCAGCCCCTCGGCCGCCGATCGACCCCAACAACACAGCGGGACAACCCGTCATCAGCAGTTGGTCACGGGATGGCCATCTGGACATGTACCTGGTGCGCGGCGATGGTCCCTATCTGCAAGGTGTGGTGCGTCAGGGGGATCAGATGCAGCATGTATTGGTGAGTCTTCCAGGCCGTGACGATGGGCCTTCGATGGTGTTTAACGCCATTACCCCCGAGGGACTGCTGCCGATCGGCACGGGCAATGGCATCAACCGCTCTGGTGGCGAGCCGGTGTCGAGAGAGCACATTGCCTTCAAGCTTGAAGGCGACAGCGCTGTGCGCATTGGCAAGCTTGATGCGCCTGGCGAGGTGCCCCCGACCTTGCACAACCTATTGGGCTTCGATCAGCGCTGGAAAGAGGAAAACACCCTCCCAAAGTCAGCTCCCACAGCGGCACCGTCAGTACAGCCGAGCGATCCACGTCCGGTGTAA MKIETAPRTSEYPVWLAVPPDDREKARLSAGRLSDGRAAIAWNKEEKLWFARPGCDLDRITAWLPDPSRRAGGGDAESEFLDVLTQAGLVVKGMPVMDGSRQRVATVDDKHGKKSGVYCGFLDRRPAGWFINYHRADSPKDVTNWAATGGESDPITRLHIRAGAKQAQEDAARDRAVTYAKQTLAAKRLYDRLPAADPAHPYLVRKGIPPTPDIRQTRNGALVVPFFNASGTFKTLQYIPPEGEKFLFKDAPKQEHFLVVGGSLDPVNPILYAEGYATARSLNLATGLPVVMTIDAGNMVAVAKVLHQQYPDSRHLFMADFDHAKDVNKGLIMANEAAIAVGGQVLYPTFNDAEIARGFTDFNDLHQSRGLDAVREQTAPLIRPYEEVTTMPTDSNTQSPDNTAQKVATPAQETLELDAAPAASIQVPDQSAPPQTRSAQPVASEASSVESQSPETAQVTEAPVGIDDAQVSTQPPLALSPAEQLASVEADPDASAIVDEQPKATMSVATDRNTPSDAPELTQPTSAEVVPEQSNETAQPDARSAQQQAPGEADPGSSANVDDQKRAAPPAATDQEMSSDAPVLNQPPLAAAEPEQSNETAQQQAPGEADPGSSANLDDQKRAAPPAATDQEMSSDAPVLNQPPLAAAEPEQSNETAQQQAPGEADPGSSANVDDQKRAAPPAATDQEMSSDAPVLNRPPLAAAEPEQSNETAQPAAPPAKQQASVEADPDTSPVAEDQPIIAPAGPAQNEDNESLSDVEVPVSGALPRRFTTARKTGPAVVPDAIFVGAPIGADEPQLQASNIDKDALLARISREVQGDNSVLYKLDAEPAFVDRGSRLEMVQGAGQEDEKVIAALLTAAQFYRGRIELTGSDEFKAKAIELIAQHQINVEMKNPAQQMLLDDARNALKQPPVTLDAIHGDTPPPYGGPQPSQAKPSAPQPQQAAPAPVHSSAPAPASTAYQPLEVEGLQRRPAQSAPQAQAPQAGVAPQPQQAAPVHSSAPASASTAYQPLDVEGLQRPLVQPAPPAQPDAPVINPPSAAPASDQPATSANQQVSPAIHQPFQAAKDGVTGKILKFGQKPFRFEPDKPESTFITLRTVNGVQTFWGKELAGLLRQTRVQPGKMVTLQWLGNHPVTVKVPRKNEQGVTVGYDDKDVHRNQWALKVEGNPAVRSGQDEGVKLGAYDAGRFAVVQQAWLAQLGVEAPLPTPPTDGLYWLTPNGEGSAKTGDELSAPRPPIDPNNTAGQPVISSWSRDGHLDMYLVRGDGPYLQGVVRQGDQMQHVLVSLPGRDDGPSMVFNAITPEGLLPIGTGNGINRSGGEPVSREHIAFKLEGDSAVRIGKLDAPGEVPPTLHNLLGFDQRWKEENTLPKSAPTAAPSVQPSDPRPV similar to GP:4903116, SP:P27190, and GP:4929009 ; Periplasmic Class 3 PF03154 Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.. COG4643 COG4643, Uncharacterized protein conserved in bacteria [Function unknown]. Function unknown NC_004633 Plasmid_pDC3000A PSPTOA0050 NP_808708 29171524 Protein 52006 52359 traL-2 traL protein ATGAAGAAAAGCATGTGCGGTGCACTGCTGATGGTTGTGTGCTGCCTGCCCGTTGTGGGAAACGCAGCAGTGTGCCGCTCAGGACAAGCGGCCAGTGTGGGCAGTCAGACTGCGTATGAGCGGGCCAAGAAGGCGTCGGACGTGTGGGCAGAGCGCGAGCGCACCGTCTCAGACGAACTCCAGGATTGCTTGTCGCGCATTCGCACCACCAGCATCAGCCTTCCCTCGTTTCCAAGCCTGGAAGACCTGATGAACCAGGTGGCCGATCAGGTATGCCAGGCGGCGGTGGACAAGATCAACAGCCATATCCCCAGCGGCTCGGACCCTTGGCAGTCGGTAGGAGGTTCATTGTGA MKKSMCGALLMVVCCLPVVGNAAVCRSGQAASVGSQTAYERAKKASDVWAERERTVSDELQDCLSRIRTTSISLPSFPSLEDLMNQVADQVCQAAVDKINSHIPSGSDPWQSVGGSL similar to GP:4512511 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0051 NP_808709 29171525 Protein 52356 53063 traM-2 traM protein GTGACTGACTCATCAGAGAAGTTGCTGCCCGTGGAAGAGTCTCTGGAAATACCTCACCTCCCCACGGCGGAAGATCAGCACACGTTCGAGCATGCCATGCAGTTGCAGCGTGACCGTGCGTTAGGTGCGGCATTCGCCCATCGCTGTCTGACCGCAGTGCTCTGGATGGCACCTGCACTGGTGCTATCGGTCAGCGTGAATGGCTACTTGGGCTGGCAGGTCGCTCATCCTCCGGTGAAGTACTTCGCGGCCGAGGGTGGTCGCGTGACCAAGATCATCCCTACGGACAAACCAGGGCATAGCAGGCGTGACGTGTCGGCCTTTGGGGCCGACACCATTCGCCAGAGCTTCACTCTGGACTTCGTGCATTACCGCGATCAGATGACCCAACTGGGCGAACGCTACTCGGAAGTGGGCTTCCAGGACTATTACAAAGCCTTGGTGGCCTCGAACCTGCTCAAAGCGGTCAAGGATCAGCGCATGAACCTCTGGGTAGACGTTGGCCCAGGTGTGATTCGCGGTAGCGGGACGATCGGGGACAAGTTTGCCTGGGAGTACCAGTACCCGGTGACTTTGAAGCTGGATGGTCAGCAATCGGGCAGTCCGCCTCAGCGCTTCATTTTTACTCTGCGCATTCAGCAGACGGACGTACGCGTGAAAAACGCAGGATTGGAAGTCACGCAAGTGATTACCACCAACGCTAACTGA MTDSSEKLLPVEESLEIPHLPTAEDQHTFEHAMQLQRDRALGAAFAHRCLTAVLWMAPALVLSVSVNGYLGWQVAHPPVKYFAAEGGRVTKIIPTDKPGHSRRDVSAFGADTIRQSFTLDFVHYRDQMTQLGERYSEVGFQDYYKALVASNLLKAVKDQRMNLWVDVGPGVIRGSGTIGDKFAWEYQYPVTLKLDGQQSGSPPQRFIFTLRIQQTDVRVKNAGLEVTQVITTNAN similar to GP:4903116 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0052 NP_808710 29171526 Protein 53120 54178 traN-2 traN protein ATGAAAACTTCAATTGCGCTGGCCCTATGGCTAGCGGCAAGCGGCTACGCCTGGGCGGATGAAACTGTCAGCCCAGAGGCCGCTCCGGCTAAATCTGCGGTTCCCCCCTCTGCCCCTGTTACGCCTGCTGCGGGGGCTGCACCTTCGGGCTGGGCTACGGGCGTGGGTGTAAACCCAGCAGCACAGAAAGCCGGATCGCCGGCACAAGGTAATGGCCCTGTGAATGCAGCACCAGCTCAGCAACCGTCTGGAAATGATCCGCTCCCTCCGCCGCCATCCGAGCTTTTTCAAAAGGCTCAGGACAGCGTTTCTCCGCTGACTCCCCAAGAGATTCGGCAACTGCGCGGGCAGGTTGGAGAGGTTGACAAGGCCATGGCCGCACCGCAGGTCGCCATTGTGCCGAGAATCAGCGCACAAACGGTGAATCTGTCGCCGGGGGCCAGTTTGCCGCTGGTGCGCACGGCGGTGAACTACCCCACTTCCTTGACCTTTATCGACAGTACCGGCGCGCCGTGGAACCTGGGCGCCGCGCCCATCAGTGGCAACCCCGATATCACGCCGTATTACGTGCCCAATAGCCCGGTCATGGTCTTGTACGCCGCAAAGCCTTTTGCCAGCGGAAACGTCACGGTTTACCTGAAAGGTTTGGCCGTGCCGATCATGCTCTACGTCAGCAGCGGGGAGTCGGATACCAAGGCCCAGACGTGGGCAGTGGACGCTCGCCTGGACTTGCGTGTGCCCAGGCGTGGGCCAGGTGCTCAGCCAGGCGCCGCTCCCGAGGTCCGTATCGGCTTGCACGATCGGGTGCTGCAGGGGTTTCTCGATGGCGTTCCACCCAAGGAGGCCAAACAGCTCAAAACCACCGGCAACGTGCCAGACACCACGGTGTGGCAAATGGGTGACGATCTGTACATCCGCACGCGGGCTGATATCCGGGACGAGTTCGAATCCACGTTGTCGTCGGCAGACGGTACGCATCTCTGGAAATTACCCGTGACGCCCTATGTGTCGTTCTCAGTCATGGGCCACACAGCGGCCCTCAACGTCGCCTTGGAGTAA MKTSIALALWLAASGYAWADETVSPEAAPAKSAVPPSAPVTPAAGAAPSGWATGVGVNPAAQKAGSPAQGNGPVNAAPAQQPSGNDPLPPPPSELFQKAQDSVSPLTPQEIRQLRGQVGEVDKAMAAPQVAIVPRISAQTVNLSPGASLPLVRTAVNYPTSLTFIDSTGAPWNLGAAPISGNPDITPYYVPNSPVMVLYAAKPFASGNVTVYLKGLAVPIMLYVSSGESDTKAQTWAVDARLDLRVPRRGPGAQPGAAPEVRIGLHDRVLQGFLDGVPPKEAKQLKTTGNVPDTTVWQMGDDLYIRTRADIRDEFESTLSSADGTHLWKLPVTPYVSFSVMGHTAALNVALE similar to GP:4903118, GP:4903117, and GP:4903117 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0053 NP_808711 29171527 Protein 54184 55542 traO-2 traO protein ATGGCAAACGAAAACGATGCCAAACGCGACATGAAACTCACCGCAGCGCTGGTTGGAGGCGCATTGGTGGTCGTTTTTGGCGGTGCCTATTACCTTTGGGACTGGCTGGCCAGGCCTGAGCCGGCGCAATCGAAGGTAGACCTGGGTCGAGTAGCACAAGCTTCGCGCAGCCACAGCACTGAAAGCCCTGCCTATCGCGATCTGCTCAAGCAATACAACGAGGAAGGGGCCAGCACGGCTAAAAACGAAAACAGCAGCTTCATTGCCAGTATGCCCATGGAGCAGACGAGCGTGATGCTGCCTGTGACGAAGGCCAAGCCTGCCCCTCAGGCAGAGCCTACCGCCCGGCGTAGCCATACTCGTCAGGACGAGAACTCAAAAGACTCCGAAAAGAAGGAAGACCCGCGTCTGAAGGCATTGCTAGAACGGATCAATCCTGAAAAAAAAGCCGAAGAGCGGCAGTCCGGACTGGTCTTCGCCCATGTTTTAGGGGGAACTAACGCTTTGAATGGCTCAGGCGATACGAACACGGGTTCTGCTGGAGGCTATGACAGCTGGAGTGAAACCCTGCCGGGAGGTGCCAAGCTGAAAACCGCTTCCATGAAAAGCACCGCAGAACCCTATTCACCTGTCGAAGTGGTGCCGCCCTACTGGCGCGGGGCTGGCGTGATCGATATCGGTGTGGACTCGGACAACAGCACCACGCCGGTGCTGGGCAAGCTGTCCGGGCCTTATGCCGGGGCTGTGCTCAAGGCACCCGAGGGCGCCAGGTTGGCCGGTGATGGTGTGGTGATCCACTTCACTGAAATGGCCTTCAATGGCGTCAATTACAAAGTCGATGCCTATGCGCTTCAGGACGACACCCTGTTGGCCAACGTGGCTTCTGAAGTGAACCACCGCTACATGTCACGCATTGTGTTGCCAGCGGTACTGGGCGGCATTGGCAATATCAGCGATATGTATTCGCAGGCCAATACTCAGGTCCTCAGCAATGGCTTTTCCACCCAGACCGCCCGACCGGGCATGCCGGATGGTACCGCCGTCGCCGGCACCATTCTGGGCGGTGCCGCCGGTCAGGCGGCCAAAGTGCTGACTGAAGACGCCGCCCGCACCCCGGCTACCCAAGTCAATGTGTTCAAGGGGCAGGTGGTCGCGATTCAGTTCATGCGAGGCGTATACGCAGGTGATGCCGTTGCCCCAGGGCGAAGCGGTGAAACGGTGCAACCTGCGGCTCCCGCTCAGGCCGTCATGTCGGCACAACCCCAGTCCCCAGCCCAACCGCTGACGCCTGATCAATGGCGTGCGCAGACCCAGACGCGAATCCAGGCGCAGCGCAAGCTGCAGGAGAGTCAACAATGA MANENDAKRDMKLTAALVGGALVVVFGGAYYLWDWLARPEPAQSKVDLGRVAQASRSHSTESPAYRDLLKQYNEEGASTAKNENSSFIASMPMEQTSVMLPVTKAKPAPQAEPTARRSHTRQDENSKDSEKKEDPRLKALLERINPEKKAEERQSGLVFAHVLGGTNALNGSGDTNTGSAGGYDSWSETLPGGAKLKTASMKSTAEPYSPVEVVPPYWRGAGVIDIGVDSDNSTTPVLGKLSGPYAGAVLKAPEGARLAGDGVVIHFTEMAFNGVNYKVDAYALQDDTLLANVASEVNHRYMSRIVLPAVLGGIGNISDMYSQANTQVLSNGFSTQTARPGMPDGTAVAGTILGGAAGQAAKVLTEDAARTPATQVNVFKGQVVAIQFMRGVYAGDAVAPGRSGETVQPAAPAQAVMSAQPQSPAQPLTPDQWRAQTQTRIQAQRKLQESQQ similar to GP:4903118 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0054 NP_808712 29171528 Protein 55584 56249 traP-2 traP protein ATGCCGGCTCCCACCCAGGCTCCCAGTCGTAGCGTGTGGCAACGCCCGATCGTCATGGGGCTTTCACTTCCCTGGCTGATCGGCATTGCCCTGGTATTGGCACTGGCTGGCTGGTACTTGTTTGGCCCCGAGAAAACCGCGTCAGTCAATCGTCTGGCCTTTGAAAATGACTTCGAACAGCAACCTTTGCCCGCTGAACAGTCGAGTACCCCCCCTGTTGCAGCCGCTGCCGAGTCTGATTTGGGCCAGTTCAAGAACGAGGTTGCGGCCATGATCGGCGGGGTGCGTACCTACGCAGAGGTGAATCGCACCGCGATCCAGCGCTTGTCCGAAACGATCAAGACTCAGGGGGTTGCACAACAGGCGTTGCAACAGCAACTGGCCGAGGCACAAGCGCAAAACAGCGTCTTGTCAGCACGTCTGTCCTTCCTTGAAGGACGACCCGGCGCGACGACCACGACACAGCAGGCCAGCAAGCCAGTCGCTAAAACACGTTCGCCGTTGAATGGTATGCGCGTGCAAGCCATTCAGAACGGCATGGCCTGGGTGTACTGGCAGGACAAGACCTGGGCCGTCAGTCCCGGCGAGAAACTGGGCCAGGTGACTGTCACCGGCATCAATCCCCAGGCCCGCGAAGTGCTGACCAGCGCGGGCACAATCAAATGA MPAPTQAPSRSVWQRPIVMGLSLPWLIGIALVLALAGWYLFGPEKTASVNRLAFENDFEQQPLPAEQSSTPPVAAAAESDLGQFKNEVAAMIGGVRTYAEVNRTAIQRLSETIKTQGVAQQALQQQLAEAQAQNSVLSARLSFLEGRPGATTTTQQASKPVAKTRSPLNGMRVQAIQNGMAWVYWQDKTWAVSPGEKLGQVTVTGINPQAREVLTSAGTIK similar to GP:4512507 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0055 NP_808713 29171529 Protein 56258 56800 traQ-2 traQ protein ATGGACGGCAGTACTGACGCGATTCAAATGTTGGTCAATCTGTCCCACAACCTGCTGACTTCCTTAGTCAACTTTGCCTTCACGCTGGGCAGCTTGTTTGCGGTCACTGGCGCTGTGAGCTACCTCGCCACTCACGCCAGTGCCGCGCGCAAAGCACCTGGCCATGCGGAAGGTGGCGGCAAGGTCATCGCTGTGTTGTTGCTCTGTGGAGGCCTGGCCGGCCTCGATCAAATGATCGGTGCTGCCGCTCGCCAGTTGGGTTGGCAGGGCGCGACCTTCGATGCCATCAGCTACGTGGACGTGGGCACCTTTGGTGTCGCAGCCGATGCGGCCAATGCCGTGTTAAGTCTGGTGCGCATGCTGGGCGTCTGGTTCGCGCTGCAAGGCATGTTGTCCTGGAAACGCTCGTTCAAGGACGGTCATACGGGCCTATCGGCCAGTCAGGACGTTTCAAGCGGTACCCTCAAGTTTGTCCTGGGCGTTTTCTGCGTATGCAATCCGTACCTGCTTAGCGCCCTGCAAAAAACCCTCGGCCTGCTGTAA MDGSTDAIQMLVNLSHNLLTSLVNFAFTLGSLFAVTGAVSYLATHASAARKAPGHAEGGGKVIAVLLLCGGLAGLDQMIGAAARQLGWQGATFDAISYVDVGTFGVAADAANAVLSLVRMLGVWFALQGMLSWKRSFKDGHTGLSASQDVSSGTLKFVLGVFCVCNPYLLSALQKTLGLL similar to GP:4512506 ; Cytoplasmic Membrane Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0056 NP_808714 29171530 Protein 56876 57271 traR-2 traR protein ATGTCCAAAGACGTAATGCTGTGCGCTGCTGTTCGCCTGTCGATTTTCAAAGATGGTCTGCGTCAACACATATTGAAAGGCCTGGCGGCAGCGATAGCTGCCAACCCAGTGCTGGCTTTTGCCGGTGCCGGCGGTGCCGACATTGCCGGGATGGGTAATTCGGCGGCAGTGGGCGCCAAGTCGTTGCAAAAGAATGCGCTGACCATTGCTCAGTTTGTGGGGGTAGTGTTTGTGATCACTGGGTTGGTTGCTGCCAAGAACAAAAAGGACAACCCTCAGATCAAAACTGGCCATATCGTGGGGTCCATCCTGTTTGGCGTGTGCCTGGCAGTGATCCCGGAAATCATCAAGCGCTCGCAAGCTCAAGTTGGCCTGGCACCCGTGGATGTGGGCTAA MSKDVMLCAAVRLSIFKDGLRQHILKGLAAAIAANPVLAFAGAGGADIAGMGNSAAVGAKSLQKNALTIAQFVGVVFVITGLVAAKNKKDNPQIKTGHIVGSILFGVCLAVIPEIIKRSQAQVGLAPVDVG similar to GP:4903121 ; Cytoplasmic Membrane Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0057 NP_808715 29171531 Protein 57590 57315 hypothetical protein GTGCTAACAATTCGCTGGGCTGATGAGGCCTCCACCGACTTGGTGGAAATTATCGACTACATCGAGCAGCGTAACCCCATCGCCGCCGAGGCGCTGAACGCCAACATATTGAAGGCCGTTGAAGGCCTTCCATCAGCACCCTACCTGTTCCGCCACGGTCGCGAAACCGGAACGCGTGAATGCGTTTTGCATCCCAACTACCTAGTGGTGTATCAGGTAGGGGCCGACACTATCGACGTGCTGCGCATCCTACACGCCCGTCAGCAATACCCTTGA MLTIRWADEASTDLVEIIDYIEQRNPIAAEALNANILKAVEGLPSAPYLFRHGRETGTRECVLHPNYLVVYQVGADTIDVLRILHARQQYP identified by Glimmer2 ; Cytoplasmic Class 3 PF05016 Plasmid_stabil, Plasmid stabilisation system protein. Members of this family are involved in plasmid stabilisation. The exact molecular function of this protein is not known. This family also encompasses RelE/ParE described in.. COG3668 ParE, Plasmid stabilization system protein [General function prediction only]. General function prediction only NC_004633 Plasmid_pDC3000A PSPTOA0058 NP_808716 29171532 Protein 57768 57568 hypothetical protein ATGAGCACCCAACTTTCCCCCATCGTTTCCGAGTTCGAAACACAGGAACAAGCAGACAGCTATGACCGCTGGTTTCGGGCCAAGGTGCAGGAAGCCATGAACAGCACTAAGCCACGTTTGCCCCACGACGAGGCAATGGCGAAGGTGCAAACCGCCCTAGCAGAGCGAAGGAAGGCCCGTGCTAACAATTCGCTGGGCTGA MSTQLSPIVSEFETQEQADSYDRWFRAKVQEAMNSTKPRLPHDEAMAKVQTALAERRKARANNSLG similar to GP:13259619 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0059 NP_808717 29171533 Protein 57953 58612 traT traT protein ATGGATGTCGATCTATCAGCCCCACCCTTGAAAGCAGCGTTTCAAGCTGAACGTGAGCAACCCTCGCTGACCCCCCTGATGCTCGATGTCAGCGGTGATCCTGAAACGCCGGTACCGGCGGCTATGCCGGGCGAGCAGTGCGCTTGCTGCGGACTGTGGACCCAAAAGCTGTGGCAGGGGGCTCGATCAGGGTTTACCGCCTCCCATGCGGTTTGCACCCTGTGCTACCTGGCCGGGCACCTGGACAGCCCTACGGCGGCTCACGGCGTGCTGGCCTACCTGCCCGGTATGGCCATGACGGATGTGCATCACCTGCAGCGCCGTGCGCTGATTGCCATTCTCGGCGGTACCCGCACGCAGCGTGCCCAAGGCAAAAGGGTTCTGCTCTGGCTGGCTCGACATGGCCGTGAGGTGGAACAAGCCTGGGGCACGACACGTGCCGGCGAATTCGCCATGGCCTTTCAGCGTCTTCCTCCTCACAAGCGCTCGACCCTTCGAAACCGCCTGGAAGGCTGTGCCCTGATCCTGCCGGCGGACATGTTCGAGGATCTGTCGCTATTACTGCCCACCGGCAAAACGGTCGCGGGGGCACTTTCCTCCCGCAGCTGGGACACCTATAAACGGAGTGACTTTTATGCCGAGCTTGATCCGTTGGGTTGA MDVDLSAPPLKAAFQAEREQPSLTPLMLDVSGDPETPVPAAMPGEQCACCGLWTQKLWQGARSGFTASHAVCTLCYLAGHLDSPTAAHGVLAYLPGMAMTDVHHLQRRALIAILGGTRTQRAQGKRVLLWLARHGREVEQAWGTTRAGEFAMAFQRLPPHKRSTLRNRLEGCALILPADMFEDLSLLLPTGKTVAGALSSRSWDTYKRSDFYAELDPLG similar to GP:4512503 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0060 NP_808718 29171534 Protein 58596 61643 traU-2 traU protein TTGATCCGTTGGGTTGAAGACCTGATCACAGAAACCTCCCGGTTTGCCGTATCACGCGATCTGCCCGACTATTGCGACTTGAACACGGTACTGCGTCTGACGGACGACGATCGCACTCGCCACCCAGCCCTCAATGCCCCGTATGTACTGGTCAACGACGATGGCGATTACTGCTCGGTGTATGCCGTTGCCGGCAGTTTTTGTGACACCGACGAAGCGGCACCCCTGGAGGCCCCTTATTCCTGGGCCGGCCGCTTGGAGCGCATGATGCATGCGCTGACAGCCCACTATCGCCGACATGGGCACAAAATCAGCCTGGTGTTCGACGATGACCCTGATCGAGGCCGCGAGGACGTCGAACGCCTGCTGGCCCCTCAGTACGCTTCTGTCAAACGGACCGGCATCGACTTGACGCCGATCCTGGACGAAAACGTTGAAAAGCTGGCCCCCTGGGTCTCTCGCGAACGCTGCTACCTGGTGTGTTACACCGGACGCAAGGCGCTCTCTGCGCATGAACTGATCGACGAAAATCGCCGTATCAAGCAATTGATCGGGCAAAGCCCGGATGCACGGTTTGGACAAAATCCGGTCCTGGCTGAAATGGCCGGCCTGAAAATTCGCCACGACGCCTTCATGAGCGCTGTGGAAGCTGCCTTTAAAGATGATGGCCAGGGTGTGCTGCTGGAACTGCTCGATGCCCATGCAGTGGGCCAGGCGCTGCGCTCTCAAGTGGACCGGCTCGGTACCAGTGAGCATTGGTACCCGCTGCTCCCTGATGATCCGATCACCCCGCATGGTGTGCGTAACGGCGACGATCACACACCGTTTCTGGCCCCGCAGCTGAAATTCCAGCTGATGAACCAGGACATGGAAACCAACGGCAGCAAGCTCTGCGTCAATGGGATGTGGCATGGCACCTTGTCTGTCGTCCTGGGACCGCAGACGCCGCAGACCTTTGCCAAGCTCAAGGCGCTGGTCCCTCGCGGCGTGCCTTGGCGCGTACGCATGGACCTGATGCCTGGGGGCATGAAGTCGCTAGGCATGAAAAAAGGCACGTTGGACTTCATGGCGTTTGTGCCGCCGCTTCGGCCCATCTGGAACTCCATCGAAACGTTGACAAAGGTTGAGCAACAAGAGCCGGTATGCGTCATGACGATCATGGCCTCCACCTGGGGTGACAGCCAGGCCGCAGTGACGCGCCATCTGACGCTGCTGACCCAGGCCTTTCAGGCATGGGGAGTGTGCGAGGTGACGCAAACCTTCGGCAACCCGGTACGCGCATGGGCCTCGACGCTGGTGGCTTCCAGCAAAGGCAGTGGCCCGAACCTGTTGTATCCGCCGCTTTCAGAGGCGCTGAACCTGTTGCCGCTGACCCGCCCGGCCTCGGCTTGGGAGGAAGACGGCAACGCCTTGTTCGCTACGCTCGATGGCAAGCTCTATCCGGTCGGTCTGGCCACCCCCAAGCAGAACAAGCTCACCAGTGTGGTCACCGGCTCTTCCGGCCAGGGCAAGTCGGTGCTGCTGAACAAGCTGGGCAATGTCACGGTGTCCAGCGCCCAGCAGCGATTACCGTTCATGGCGGGGGTGGACAAAGGTTTCTCGATGCAAGGTCAAGTCGCCTTGCTGCGCGACAGTCTGCCGCCGGAGCGCAAGGACGAGGTCGTGGGCATTGTGCTGCAGAACAGCCCCAAGCATTGCCGGAACCTGTTCGATATCCAGCTGGGCGCGCGGTTTCCGATCGCCCCCGAGCGTAACTGGATCATCAGCATGCTCACGGCCATGTGCATTGACCCCTCTACCGGCAATCCGCCAAACGAACGCGATACCCGGCAGATACTGGACCGCGTCATCAGCATGGCCTATACCGCCAATGCCGAAAAAAGCCCCAGAGCCTGGGCGCGCGGGGTCGTCCCCGAAGTGGACACTGCCTTGGATAAAAGCGGGTTGATCGAGCGCTATCCGGCCCAGTGGTGGGATAGCAGTACCTGGTATGAGGTGCGCGATCTGTTGTTTGAAGCAGGCTTTGTTAAGGAAGCGCAGCTGGCCCAGTTCGAAGCAGTGCCGGAACTGGCCGACATGACCACCTTCCTGAACCATGAAGACGTAGAAAGCGCCTATGGTCGGGTGCAACGTGATGGCAGTCAGGAGCTGTTGCTGGAGTACTTGCACCGCTGCATGACTGACGCCTGTAGAGAATTCAAGATGCTGGCCGGGCGTACGCAGTTCTTGATCAGTCCACGCACGCGAGTGATCGCGATCGATCTGAACAATGTCATGGGTGATAACACCACCAATGCTGGCCACCTGAAAACCGGAATCATGTTCCTGTTTGCGGGCCAGGTGGCTGGGGGCGATTTTGTGTTGCCTCAGTACAGGGATGAGCTGTTGGAGGCGGTGCCCACGCTTTACCACCCCATGCATCTCGACCGCTTGGAGCAACTGGATCAGGAGGTCAAAACCAAGGTCTACGACGAGCTGCACAATGCGAAACAGGTGCCCTTCATCTTTCCCATGCTGGAAACCCAGGATCGTGAGCAACGCAAATTCGGCATACGCACGGTGTTGTCCTCGCAGTACGTGAGCGACTTTCCCGACGCCATTCTGAATTCGGCCAACTCGCTGTACATGATGGAGGTGGACCCCAAGGACGAGAAGCTTCTGACCGACACCATCAAAGTGCCCAAGGTCACTCTGCAGCGCTTTCAGCGTTTAGGCTCAGGTCCAGCAGCGGATGGCAGCGGCGTACCGTTTTTGGGCGTGTTCCGAATCAAGGGTGGCGGCACCCTGGCGCGCATTCTGAAAAACGCCATGGGGCCCCTGGAACTATGGGCGTTGGGCTCTTCACCGACCGACAGCGCCCTGCGCAGGTTGTTGTATGAAGCGGTCGGCGGTTCCACGGCTCGCGCCATCCTGGCCGAAGCCTTTCCCCAGGGCACGGCAGAAAAACTCATCGCGCTGCGCCAGAAGCAAGCCGGTGAAGTGGATTCCAACAACGTGATTCGCACGCTGGCCAACGAGTTGATCAAACGGCGTGGTTACAACCTCTAG MIRWVEDLITETSRFAVSRDLPDYCDLNTVLRLTDDDRTRHPALNAPYVLVNDDGDYCSVYAVAGSFCDTDEAAPLEAPYSWAGRLERMMHALTAHYRRHGHKISLVFDDDPDRGREDVERLLAPQYASVKRTGIDLTPILDENVEKLAPWVSRERCYLVCYTGRKALSAHELIDENRRIKQLIGQSPDARFGQNPVLAEMAGLKIRHDAFMSAVEAAFKDDGQGVLLELLDAHAVGQALRSQVDRLGTSEHWYPLLPDDPITPHGVRNGDDHTPFLAPQLKFQLMNQDMETNGSKLCVNGMWHGTLSVVLGPQTPQTFAKLKALVPRGVPWRVRMDLMPGGMKSLGMKKGTLDFMAFVPPLRPIWNSIETLTKVEQQEPVCVMTIMASTWGDSQAAVTRHLTLLTQAFQAWGVCEVTQTFGNPVRAWASTLVASSKGSGPNLLYPPLSEALNLLPLTRPASAWEEDGNALFATLDGKLYPVGLATPKQNKLTSVVTGSSGQGKSVLLNKLGNVTVSSAQQRLPFMAGVDKGFSMQGQVALLRDSLPPERKDEVVGIVLQNSPKHCRNLFDIQLGARFPIAPERNWIISMLTAMCIDPSTGNPPNERDTRQILDRVISMAYTANAEKSPRAWARGVVPEVDTALDKSGLIERYPAQWWDSSTWYEVRDLLFEAGFVKEAQLAQFEAVPELADMTTFLNHEDVESAYGRVQRDGSQELLLEYLHRCMTDACREFKMLAGRTQFLISPRTRVIAIDLNNVMGDNTTNAGHLKTGIMFLFAGQVAGGDFVLPQYRDELLEAVPTLYHPMHLDRLEQLDQEVKTKVYDELHNAKQVPFIFPMLETQDREQRKFGIRTVLSSQYVSDFPDAILNSANSLYMMEVDPKDEKLLTDTIKVPKVTLQRFQRLGSGPAADGSGVPFLGVFRIKGGGTLARILKNAMGPLELWALGSSPTDSALRRLLYEAVGGSTARAILAEAFPQGTAEKLIALRQKQAGEVDSNNVIRTLANELIKRRGYNL similar to GP:4903124 ; Cytoplasmic Membrane Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0061 NP_808719 29171535 Protein 61667 61903 hypothetical protein ATGAATAACGAAAATGATTCCCTGCACGACGCTTTGCGTGAAGCGAGCCCGGATCAATTACAGGCTTTGGCGGAGCTGGCCACCTGGATGGCAAAGCACCATCGGTTGCTGGTCGTTGGCCGGTCAAACGGTATTCGGATCGGCGCTACGGATAAGGTCATCGCGTTCATGCGCGAACACCTTGACACCGAGCTGGCGGATACGGTCTCGGAGAACCTGGTGCGTGTTGCGAACTGA MNNENDSLHDALREASPDQLQALAELATWMAKHHRLLVVGRSNGIRIGATDKVIAFMREHLDTELADTVSENLVRVAN identified by Glimmer2 ; Cytoplasmic Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0062 NP_808720 29171536 Protein 61946 63160 traW-2 traW protein GTGAAAAAGCGCTATGCATTAACGGCGATAGCCGTGGGGGTACTGCAAACCCAACAGGTCCTGGCGTACGTCCAGCCGGTGGCCGTCACGGCCAGCGTGCCCATTACGGCGCAGGTAATGCCGGCCATGGCCGGCCTTCAAGCTACCCTGGCGGAAATCCTGACCACTGAGACACAAATCGGCACGGCCATCGTGCAGGCCAGTGACAAGCAAGTCGCGGTTATTTCTGAGGCCGCACGTGCCCAGCGCGAGGCCGATATTTTTGGCCGTCAGACCGAGCGTCTGGAGCGTGCCCGAGAACAGTACTCGGTCCCTGACAGCATCTGCAGCGAGTCGGCCTCTGGAGTCGCGGCCACGGTGGGGAAGGTGAGCCGTGCGCAAACGGCGGTGCTGGCCAGCGGGGCAGGCGTCGGCAGTGCTGTGGTGCAGAAGACCATCGCTTCCGAGCCCGTGGCCTCGCGTCAGGGTGGCTATCGCAGTGCCGCCATGCACGCGCAGTACTGCACACAAAGCGAATCGGCCCAGTACGGCGGTACTGATCTGTGCCCGCAGGTCTCCAGCTTGCCTGGGGGCGACATCGAAATGCGCTCGTTGATCGACGGGGCGGGAGCCGTGGGCAAGGCCCCCGACTTGACGTTCAATCAGGATCAAGTCGATGCGGGCATGGCGTACATGAAGAACTCGGCACGCCATGACGGGGGGCGGGCACCGGGCAAGGGGGATATCCAGTCGGCCACGGGACGTGAGTATCAGGGGCTGATGACCCAGTACAAGGCGATTCAGAGCGCCGCGACTCAACCGCAGCTAGACATTATCGCCGCCAGTCAGGCCAATCCGGCCACACAGGAGGCATTGCAAGAGGCGCTACAGAATCCATCAGCGGCGGAGTATTTCGCTTCAACGGGAAGCCAGCAAGCACAACGCACCGGGGTGATGAGCGAGCGCGAGTTCGAGGCTTTCGAGGTGGGCAGGCGCTATGCCAATACCGCCTATGAAACCGACCTTCAGGCCCTGAGCGGAGACAACCTGATGCGTGAATTGGTGCGCGTGCAGAGCCTGGGCAACTGGCTGCAGTTGGGACTCAAAAACGACCAACGTCAGGCCAACATCATTGCCGGCCAGCAACTGGCCCTGGCGGCAGACGCCAAATACGTTCCGCAGCTTCAGGAACTGGGAGCAAAAATGAGTTCGGGAGTCACCGCACATGAAAACTGA MKKRYALTAIAVGVLQTQQVLAYVQPVAVTASVPITAQVMPAMAGLQATLAEILTTETQIGTAIVQASDKQVAVISEAARAQREADIFGRQTERLERAREQYSVPDSICSESASGVAATVGKVSRAQTAVLASGAGVGSAVVQKTIASEPVASRQGGYRSAAMHAQYCTQSESAQYGGTDLCPQVSSLPGGDIEMRSLIDGAGAVGKAPDLTFNQDQVDAGMAYMKNSARHDGGRAPGKGDIQSATGREYQGLMTQYKAIQSAATQPQLDIIAASQANPATQEALQEALQNPSAAEYFASTGSQQAQRTGVMSEREFEAFEVGRRYANTAYETDLQALSGDNLMRELVRVQSLGNWLQLGLKNDQRQANIIAGQQLALAADAKYVPQLQELGAKMSSGVTAHEN similar to GP:4903126 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0063 NP_808721 29171537 Protein 63150 63752 traX-2 traX protein ATGAAAACTGAACCTGACACAACAAAGCACGAGGACGAACAATCGCCGCCGGACGACAAGCATTCGGGCACACCGTTACGGCGCGCCGGCCATGTGGGGCTGTCGATCCTCAACCCGTTCTCTGACCTGGCGGTGATCTATCGCCGGGGCATAAAACCGACGGCGCAAAAGCTGAAGCTACTGAAGACGTTGCTGACCCCGGCGTCAGCAACGACTGAGGCAGATGCAGCCGGTGTCAGTTGGAGTGTGGCTGTCGCTCGTTCGGGAAGGACTATCGAACAGCTACTGACCTCCTACAACCGCATCAGGATGGCATGGTGGTGTTTGATGATGGTCAGCACCAGCCTGAGTGTTCTGCTGCTGGCCATGCTGCTGTTGGCCAACTTCAGCCTGCCATTGAGCACCTTTCTTCGGGCGACGGTAACGCTCCTGGTCCTGGGATCAATCGCCAGTTTGGGCTTCGTCAAAACGCTGATCGCGACCTACCGACTGTGGCAACTGCAGAAAAGGCGCGTCAGCGTAGCGGAACGAGGGACCTTCAAAGACTTTCTGGCCGAGACCCGGTGGTGCCGGCTGGTGCTTACTCGCGGCCACCTCAAGTAA MKTEPDTTKHEDEQSPPDDKHSGTPLRRAGHVGLSILNPFSDLAVIYRRGIKPTAQKLKLLKTLLTPASATTEADAAGVSWSVAVARSGRTIEQLLTSYNRIRMAWWCLMMVSTSLSVLLLAMLLLANFSLPLSTFLRATVTLLVLGSIASLGFVKTLIATYRLWQLQKRRVSVAERGTFKDFLAETRWCRLVLTRGHLK similar to GP:4512493, and GP:4903127 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0064 NP_808722 29171538 Protein 63781 65925 traY-2 traY protein ATGAACCTCATTAAACGCTTCTGGTGGATGGGTCTTCTGCTGGTCTTCTCCGTGCCGGTACTGGCCGATAACGTGGATTACCAGACGATCGCGGCAGCCTCCCAAAAGCCCAATGACCTCTCGCGCCAGGCGATGGTCATGATCATGGGCCAAGTAGCAGTCGATCCATTTGCACCATCACAGCCAACCTTGATTGGCTCACTGTTCGCCATTATCAATGGCGTTCTGGCCGTGATGGCCCTGTTCTGGTTTCTGACCATCACCCTGAAAACCATTGTGAAGGCTGGGCATCAGGGACAGTTTTTCGCAGGCGGTCGATCTGCGTTGTACCCGATCATGACGTTTGCCGGTTTCATCATGATCTTGCCCACCCAATCAGGTTGGTCACTGGCCCAGCTCGTCATGGTATGGGCCTGCTCCACCATGGGGGTTGGCAGTGCCAATCTGCTGACTGATAAAGCTGTGGACATGATGGACAGCGGCTACTCGATGGTGACGCAACCCACGGCTCCTTCAACCCGAAGCGCGGCACGGGGCATCTTTGAAATGAACTTGTGCAAGTACGCGATCAACCGTGAGCTGGAGTCGCTGTATGCGGATGGTGTGGCCAATACCCCGTTGATTACCACCAAGGGGGGCAACGGCCAATACGACACTGGCAACGGCAGCGCGGTGTGTGGTTCTGCCAAAACACCCAATACGGGCCGCACCGGAACCTGGAACCTGCTGTTTGACAGTGACGTGGACACGAGTGGGGTGATCACGGCGCAGCACCAAGCGCTAGACACCATGCAAAGCACCCTGGATCAAGCGGCACAGGCGTTCGTAGACACCTACCTGAGCAAGCGCGACCAGGATACGGGGAGCTTCCAGGACGCCGAGACGCAGATCCAGAACGCAGCCGCCGCCTATGAAAACACGGTGAACCTGGCCCTCAACAAGATAGATTTCAAGGACACACTGCAAAGCCAGTTGTCGAGCCAGATCAAAAGCAGTGGTTGGGTGGCCCTGGGCAGTTGGTATCACACCTTCGCCACAGCTAATAACAAGACCAACGACGTGGCCAGCTCGACCCCGGTTGTCACGGGGATGAGTAATCTGGGCGAGCACGGCACCGGCGACTTGTATAACCAGGTGTTCGCAGCCTACAAATCGCAGGTGCAGAACAGTACCTACACCGCGCCGCTGGGGACGCAGACGACCAAGGATGACGGGGCGGCAGCGACGGCGAATGACCCGAATGCAGTGTTTGTTGGCATTTTTAAGTCGCCTATGCAGAAGTTAACCTCGTTATTTGCAACTGGGAAAATTGGTACTGATGCCAGCTTTTCCAACCAGGTGAACCCGCTTATCAAAATGCAAACCATTGGTGACTACACGCTGGGAACTGTTGAAACCCTGATGGTGGCCTATGCCGGGACGTGGGCAGCTGCCTCATCGGCCAGTAATTCGCCGTTGGGCTGGGGTGCCAAGATATTTTCGGTGGATGTCGGGGCGGTGGTGAAAGATGTGCTGGGTGCGCTGGCCCCGATGTTCTATTTCGTCATGTTCGCCCTGCTGGCCATCGGTTTTTCGCTGGCCGTATTTCTGCCTGCTGTGCCCTTTCTGTTCTGGATGGTGGGCATATTCAACTGGGTCGTCAGTGTGCTGGTGGGCTGTGCGGCGGGCTCAATGTGGGCTGCCACGCACCTGGGGGCCGAAGAGGACAAGGGGAGTCGCAGTACCTACGGTTATATCTTTCTGATCGACATGATGCTGCGGCCTTCGTTGATGGTACTGGGGTTCTTTTTTGCGTCGGTGGCCGTAATCGGTGGGGGAACGATCCTGAATCTGTTATTCGCCTCGGCGCTGGCCAATGCCAACGCGGACTCGATCGTGGGATTGTTCAAGATGATCGGATGGCTGATGATCTATGCCCGCATTGCGACCTTTGGTGTGACTCGACTCTTTGGCCTGCAGGCGTCCTTGGCGGACTACGTGATCTCGTTCCTGGGCGGTCGAGAAGGCGCCAACCTGATGGGCGGCATGGTCGATAACATGAAAGGCATGTTTGGTGCTGCTGGCTCTGGGGCACAACGTACCCCTGGCGTTAAAATGCAACCTAGGAAGCCTGGCGCAGGGGGCAATGGGGATGGAATCCAGTAG MNLIKRFWWMGLLLVFSVPVLADNVDYQTIAAASQKPNDLSRQAMVMIMGQVAVDPFAPSQPTLIGSLFAIINGVLAVMALFWFLTITLKTIVKAGHQGQFFAGGRSALYPIMTFAGFIMILPTQSGWSLAQLVMVWACSTMGVGSANLLTDKAVDMMDSGYSMVTQPTAPSTRSAARGIFEMNLCKYAINRELESLYADGVANTPLITTKGGNGQYDTGNGSAVCGSAKTPNTGRTGTWNLLFDSDVDTSGVITAQHQALDTMQSTLDQAAQAFVDTYLSKRDQDTGSFQDAETQIQNAAAAYENTVNLALNKIDFKDTLQSQLSSQIKSSGWVALGSWYHTFATANNKTNDVASSTPVVTGMSNLGEHGTGDLYNQVFAAYKSQVQNSTYTAPLGTQTTKDDGAAATANDPNAVFVGIFKSPMQKLTSLFATGKIGTDASFSNQVNPLIKMQTIGDYTLGTVETLMVAYAGTWAAASSASNSPLGWGAKIFSVDVGAVVKDVLGALAPMFYFVMFALLAIGFSLAVFLPAVPFLFWMVGIFNWVVSVLVGCAAGSMWAATHLGAEEDKGSRSTYGYIFLIDMMLRPSLMVLGFFFASVAVIGGGTILNLLFASALANANADSIVGLFKMIGWLMIYARIATFGVTRLFGLQASLADYVISFLGGREGANLMGGMVDNMKGMFGAAGSGAQRTPGVKMQPRKPGAGGNGDGIQ similar to GP:4903128 ; Cytoplasmic Membrane Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0065 NP_808723 29171539 Protein 66269 66919 exclusion-determining protein, putative ATGAAAGTACAGCGCCTGAAAACAGCGAAAGAAGGATGGTTTTGGATCGTCAAAATCTTCTACATGCTTTTTGCTTTTCCATTTGCAGTGCTAGTTGGAGTCCCTTCACTTTTCATCGCTTCCTCGCTGATAGAGGAGAAAGACTTCACTACCCTCGGTTTTTGCTCGATGCTTTGGCTTGGCGTACTGATTCCCATGGGAATATTCATCTATGGCGTACTGAGTCGCCGTCGTTTGCTCAAGCGAGTCACACGGGTCATAAAATCGCCGCAGTTCTTCAACCCAGACCCTACCAATGAGATTTATCACGAGGGTGACGGCAAGTACCTGGGCATCGACACGAAGAACGGTACCATTCTGTACGTGCACCGCATTCGTAAGGAGCAGGTAGATGTGGTGGCCCTGACCATGGACGACTGGACCAACCGCGAGGTCGAAGGCAAGGGCATATTACGCCTCTATACCAAACACCCGGATCTTCCACGGATCGAAATCGGAACACCCTTGGCGCAGCTTTGGTATGACACCCTGGGGGCTATGGAGCACAAGCAGAAGCAGTACAGCACCCCACAACCGTTCAACCGCTATGTGCATGACCACCTCGAAGCGCTTGAACGTGATCTGAACGTGCAGATCCCACGCCTGGCGTGA MKVQRLKTAKEGWFWIVKIFYMLFAFPFAVLVGVPSLFIASSLIEEKDFTTLGFCSMLWLGVLIPMGIFIYGVLSRRRLLKRVTRVIKSPQFFNPDPTNEIYHEGDGKYLGIDTKNGTILYVHRIRKEQVDVVALTMDDWTNREVEGKGILRLYTKHPDLPRIEIGTPLAQLWYDTLGAMEHKQKQYSTPQPFNRYVHDHLEALERDLNVQIPRLA similar to SP:P05839 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0066 NP_808724 29171540 Protein 67012 68211 trbA trbA protein ATGCAAAATCGACAATCCCAAGGTGCATGGGAGGGCGAGCAAGCGCAGATGTTATTGGCGCTTTGTGCAGCCGTCCTGTTGTGCTGGATGTTCTTCGATATCTTCGTGTACTGGACCACCTGGACGCTTTATTGGTTATGGAAAATGGTGGATTTTCCCTTCATCCATGTCTGGGCCGGTGGCAAGATCAACCTGCTGGCCGACGTGGCCAACCACGCCAAGGCCGTGACGCTGGATGAGTGGCTTGAGGTGATGAACGCTACCAGTGGGATTCTGCTGCTGTTCCTGATACCGCTGGTGATTGTGAGCAGTTGGGGGCTGGCGCAGCATCCGGTACTGCCGTTTCGCAGCAAACGCCTGGTGAACATTCACACGCTGCCTGGCCTGGTGAGTCGTTTCGCACCCTCGGTCATCCCGGTGTTGGCCGCGTCCGGTCCCGATGGCCTGATGAACGATACCTCCCCCAGTAATGCCTGGGCGCTCAAGCCCGAGGAGTTTGCCGAACGTTACAACCTGGTGCAGCGCAAAGTGCTGGATCGAGAGGCTGCTCGTGCGGTGTTCGAGGAGCAAGTCGGAGATGTCCATAATGGACTTCTGGACTTGACGCCCTATGAACGGGCCTTGCTGGCCGTATTCGGTCTGCAGGTATTCCTCAATGACCGCAAGGCAGCGACCCGGTTGCTCGATGACCTGAACCGTTCCTGCATGATCAAGGGGTTGTTGCGGCGCAAGACCTTCTCGTTGACGCCGCTGTACGGCTTGGCCGACGCGGGGTTTGATCGCGTTGCAAAAGCACCGGGCGTCAGTGAGTGGCTACAAAGCCATAGATCGATGCGCACCGCGCTGGTGGCACTGTATGGCCGCGATCTGCGCTTGGCGCCGGCGCGCTTTCGCTGGCTCAAGGGGGTTAACCGTACTTTGTGGTATGCCTTGCACAGTGCCGACACGGCCAAGGTGTTTGTGGAAGGCGCCGGTGTTCAGGCTCAGGCGCGGGCAGAAGTCCATGCCAGAAAGCTGGGGCTGCCACGTCCTGGGTTGATGGTGACCCAGGCCATCGATGGCTTGCAGGCCGAGTTGGAAAGCATCGGTCTGGTATTTGCGCGACATGTCATCACGCCTAAACGCCGGGAGGCCTCTGACCTTCCTGTCATGACGGCGGTGTATGCCGTGCAGCCTACTGAGTTAACTGAGCCAGCCTGA MQNRQSQGAWEGEQAQMLLALCAAVLLCWMFFDIFVYWTTWTLYWLWKMVDFPFIHVWAGGKINLLADVANHAKAVTLDEWLEVMNATSGILLLFLIPLVIVSSWGLAQHPVLPFRSKRLVNIHTLPGLVSRFAPSVIPVLAASGPDGLMNDTSPSNAWALKPEEFAERYNLVQRKVLDREAARAVFEEQVGDVHNGLLDLTPYERALLAVFGLQVFLNDRKAATRLLDDLNRSCMIKGLLRRKTFSLTPLYGLADAGFDRVAKAPGVSEWLQSHRSMRTALVALYGRDLRLAPARFRWLKGVNRTLWYALHSADTAKVFVEGAGVQAQARAEVHARKLGLPRPGLMVTQAIDGLQAELESIGLVFARHVITPKRREASDLPVMTAVYAVQPTELTEPA similar to GP:4512494 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0067 NP_808725 29171541 Protein 68297 69382 trbB trbB protein ATGGCCTCGGCATCTTTGCGCGCCCCGTTTTCGGTGGACATCCAAGGCGATCAGCTTGTTGTTTATCAGGCAGATCAGGAAGAAGGCATCGTGACACGCACGATTTGCACCCTGGACCTTCGCCATCAGCACTCGTTTTATCTGAGCAATGACGGTGTGGTCTGCCGCGATGTTCAGGGTTTTGAATTCTCTCTTGAAACCCATGACAGTGACGAAACCCATGAGCTACTGACCGCACTGTCGCGGGCTTTGCTGCGTCATGGACGACGCAAGACCCAGCGGCGTCTGATGGGCGTGTTCGTGCTGTTGGTTGTGCTTTGCCTCGGTGCCCCATGGCTTGGCCGAGCGCTTGAATTGCCTGTTGTAATGCCGGCGGCGCAGGTCATCACGCCCTCAGTCACGCCCCCCCCCAAGCCGGACCTGGCCAAGCGCAGCGCGCCGGCGCCGATCGCGTCTGAGCCACGCCAGTCCGCTGCAGACGTGGCACCTGACGATGGCTGGATATTGCCCTGGGAAGTTCGGGCCACACTCCCTCAAAAGCTGCACAACGCTGCGGAGCGCAAGCTGTTCACCGTTGACTATTCCAGCGGTCACGCGCGCACGCTGTATGTCTTTTCGGACCCTGGCTGTCCGAACTGCCAGCGTCTGGAGTCGTCCCTCAACACGCTCTCCGATGCCTTCAACGTGGTGGTGTTTCCTGTGCCGGTGATTGGTAAGGAAAAGTCGATTGCCGCTATTACGCCGGTGCTGTGCCTGCCGCCTGAGCAACGCAAAGCCGCGTGGGATCGCCTGTTTGATGCAGCCCCCGAGGGTGTGAACTTTGGGAAACCCCCGTTAAAGCCGGCGTCGGAAGGGGTGGAGTTGAAAGCGGCGCAACCAGCAGGCACGTGCGATGTTGCAGAAAAGGCCTTGGGGATCAACCAGACGGCCTATCAGGCGTATCGCATACCGGGCACGCCCTGGGTGATCAGCGACGATGGGCGCTATGTGCCGCAGGCGTTGTTGCGTGATCCGATCAGGCTCAAAGCCTTCCTAGATGAGCGACCTGCCCGCCAGGTTCAGGAGGTGTCGAATGCGCCCCAATGA MASASLRAPFSVDIQGDQLVVYQADQEEGIVTRTICTLDLRHQHSFYLSNDGVVCRDVQGFEFSLETHDSDETHELLTALSRALLRHGRRKTQRRLMGVFVLLVVLCLGAPWLGRALELPVVMPAAQVITPSVTPPPKPDLAKRSAPAPIASEPRQSAADVAPDDGWILPWEVRATLPQKLHNAAERKLFTVDYSSGHARTLYVFSDPGCPNCQRLESSLNTLSDAFNVVVFPVPVIGKEKSIAAITPVLCLPPEQRKAAWDRLFDAAPEGVNFGKPPLKPASEGVELKAAQPAGTCDVAEKALGINQTAYQAYRIPGTPWVISDDGRYVPQALLRDPIRLKAFLDERPARQVQEVSNAPQ Annotation based in part on location in a cluster of genes. ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0068 NP_808726 29171542 Protein 69369 71657 conjugal transfer protein, TraG/TraD family ATGCGCCCCAATGACTACGCCGTCGAGCGCACGCGCCTAAATCGGCGGGTTTACCACTCGGCACTGGCTGAGTGGTTGATGGGCCCCGGTAGTCTGACGCTGGGCCTTGCCGGGTCTGTGGTGGGAGGCGTCCTGTACCCGGTCAGCCTGTGGCTCAGTCTGCCGGCCTTGCTGGTTTGGTCACCTGTCATGCTGCTCGAACCCTGGCAGATGCCCATGCGCATGCCTTCAGACATGGACTGCCTCGACCCTTCGACGCAACGCCAGGTGACGGGCAAGCTGCTGGGTTTCTTGCCGGTCACGGCCATGCGCACGGTGATGCTCAAGGCAGCGGGCATCCTGTATATGGGGTACCTGCGCGGTCGGGACGCCGGGCGTGAACTGTGGCTGTCGCTGGATGACATGACCCGCCATATTCTGATGTTCGGTACAACCGGTGCCGGCAAAACCGAAGCACTGCTGGGGTACGTGTTGGGCCAGCTGGGCTATGGAAAGGGCCTGATTTATTCGGACGGCAAGGCCCAAAATGATGTGGCCGCCGCGATCGTGTCGCTGGCCCGACGCTTTGGCCGTGAAGACGACGTTCGGATGATGAACTTCATTACCGGGGGCCGCTCCAGGGCACAGGAACTGCTGGAGGACAACAAAAGCAGAGGGCAGACCAATACCGTCAACGCGTTCGGTATTGCTCAGGAAACCTACATCATCAACCTGATGGATTCGATGTTGCCTCCTGCGGGCAACGATGCCGGCTGGCAAGAGAAAGCCCGGGCCATGATTCAGGCTTTGGTGTTCTCCCTGGTGTACAAGTGCCGGCGTGAAGGCACGGTCATGTCCCAGCGCACGATCCAGGCACATTTGCCGTTGCGGGCCATTGCCAAGCTCTACATCCAGTCGGTGGAACAGCAATGGCATGAAGACGCCCAGTTACCCCTGAAAAACTACCTGGGCACATTGTCCGGTTTTGACCTGGCCAAGGTGGATTCGCCGGAGGAATGGGCGACCACTGCGTTGGATCAGCATGGTTTTCTGATCCAGCAATTCACCCGCATGCTGGCCTTGTTCAATGACACCTACGGCCATGTGTTTGCTCGTGACGCCGGCGACATAGACCTCAAGGACGTGGTGCATAACGATCGCATCCTGGTGGTCCTGATTCCTGCGCTGGAAATCTCCTCGACCGAGGCCGCGACTCTTGGGCGTCTGTACGTGTCGCAGCTGGCCATGATCCTGAGCCAGGATCTGGGGGAGAAACTGGAGGGCAAACCCGAAGACATCCTGGTGATCCGCAAGTACAAGGACCGCTTTCCGTTCTTGTGGATCTGCGACGAGGTCGGGGCCTACTACACCGAAAAGCTCGGTGAGCTGGCCACGCAGGTACGCTCCCTGGGGTTTTGCCTGCTCCTGGCCAGCCAAGAGGCGCAGCGCCTCAAGTCGGCGGCCGGCGACAAGGTGTGGACGCTGATCGGGAACATGGGGGTCCGAATCACCGGCAAGATCATGGACCCCAAGGACACTCTCGAAATACTGCAGTTGATGGCCGGTACCGAGTACCTGCCAGTGATGAGCGGTATGGTGCGTCAGGCCGGAATCATGGGGGCCAGCTGGGAGGAAGCAGACACACTGAGCCTGAAAGATGAGAAGAAAGTCAGCGTCGAGGAAGTGCAGCAGCTCAAGGAGGGGGAAAACATCACGCTGTTCAACGGACAAGTGATTCGCGGCAGCTCCTTGTACATTCACGATGCTGACAAGCTGTCCAAGGAAGCGATCCGGATCAACCGCTTCATCGAGGTGGCCCCGCCAGCGCTGGACACCTTGTTGGCCGGTGCGCCTGCTCACATTCGGCGCAGCTATTCGCGCGCGGACCGCGTGCAGCAGATTCTGTACCACCTGGCGATGAAGCCTGGTCGTTCAGACCTTGAAAACCTGGTGCTGACAGATCCGACGTTGGTCGTCTTGAACGAGCTGGGAGAAGAGTGGCGGCTGATCTGGCGTCGCCGTCCTGGAGCGGCAGTGCGCAGCACCTTGTTATGGCACACAGCGCTGGAGCATGTGCCCAAGCGCGGAAGCGGCTACGTGGCGCAATCGTCCACGGCGCTGGACCTGACCGTCGGCAGCAAGCGGTTGCAGACCTATCAGGCGCAGCACATCGATCCGGCCAGAGTACCGAAAGTGAAGGGCAAGGCGCCTGCACCTAGAGCCACAACGCCTGTTCCACCAAGCCACGACCAGTCACCGCCCTATTTCGACGACGGATCGTATTCGCCGGCGCCGTTCGACTGGGATTAA MRPNDYAVERTRLNRRVYHSALAEWLMGPGSLTLGLAGSVVGGVLYPVSLWLSLPALLVWSPVMLLEPWQMPMRMPSDMDCLDPSTQRQVTGKLLGFLPVTAMRTVMLKAAGILYMGYLRGRDAGRELWLSLDDMTRHILMFGTTGAGKTEALLGYVLGQLGYGKGLIYSDGKAQNDVAAAIVSLARRFGREDDVRMMNFITGGRSRAQELLEDNKSRGQTNTVNAFGIAQETYIINLMDSMLPPAGNDAGWQEKARAMIQALVFSLVYKCRREGTVMSQRTIQAHLPLRAIAKLYIQSVEQQWHEDAQLPLKNYLGTLSGFDLAKVDSPEEWATTALDQHGFLIQQFTRMLALFNDTYGHVFARDAGDIDLKDVVHNDRILVVLIPALEISSTEAATLGRLYVSQLAMILSQDLGEKLEGKPEDILVIRKYKDRFPFLWICDEVGAYYTEKLGELATQVRSLGFCLLLASQEAQRLKSAAGDKVWTLIGNMGVRITGKIMDPKDTLEILQLMAGTEYLPVMSGMVRQAGIMGASWEEADTLSLKDEKKVSVEEVQQLKEGENITLFNGQVIRGSSLYIHDADKLSKEAIRINRFIEVAPPALDTLLAGAPAHIRRSYSRADRVQQILYHLAMKPGRSDLENLVLTDPTLVVLNELGEEWRLIWRRRPGAAVRSTLLWHTALEHVPKRGSGYVAQSSTALDLTVGSKRLQTYQAQHIDPARVPKVKGKAPAPRATTPVPPSHDQSPPYFDDGSYSPAPFDWD identified by match to PFAM protein family HMM PF02534 ; Cytoplasmic Membrane Class 3 PF02534 TraG, TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.. NC_004633 Plasmid_pDC3000A PSPTOA0069 NP_808727 29171543 Protein 71685 72107 hypothetical protein ATGAGTTACAGACCTCAAAGTGATCCCTGGTTTTCAAGGAAGGTTTTGAAGTTTCACATCGCGAAAAACACGTTTGCGGTATTTAGCCAATATGGAGGGCTTGGCTTGTACGGCCTTCCACCCACTGGGTCCGTTACCCGAGATATAGGTGTCGATGATTGCCGGGCTCTACTGCAGAACATGAGGCACTGGCTGGGGTCTCCAACGGCCCACGCAGAAGCCATCCAATGCAGTACCGATATCGACTACGTGCGTTATCAGGTTGATTGGGTCCAGTCGTGTCTGGGCAAGGAATCCAACCAGAAATACCTGGGTGTGATGTTCATTCTTGACGGGTGGGACGACCGTCAAACGGATGAAGACAACAGACGAGCGGATGCCTATTGCCACCGTCTGTATTCGTCATCGCCTTACGACGATTAA MSYRPQSDPWFSRKVLKFHIAKNTFAVFSQYGGLGLYGLPPTGSVTRDIGVDDCRALLQNMRHWLGSPTAHAEAIQCSTDIDYVRYQVDWVQSCLGKESNQKYLGVMFILDGWDDRQTDEDNRRADAYCHRLYSSSPYDD identified by Glimmer2 ; Unknown Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0070 NP_808728 29171544 Protein 72068 72691 hypothetical protein TTGCCACCGTCTGTATTCGTCATCGCCTTACGACGATTAACTTTGCTGATCGGAGCCCCCATGAAAGAGACTCTTTGGCGAGCTTTTGCGGTGATCGTGTCGCGTCCATGCGTCGCCGCCTGGATCATTCGACGCGCCCAGCGTACGCCTTACCAACACATCACCTCGGCCGATGGTCAGGAACGCTACATGGGCCGCTGGTGGCTGTTCGATGGCTATGATCGCGCCAGGCAGCAACCCAAACACCGCTGGTTTCCCTGGTCGGTCCGGGTCCACCACATCTTGTGCGAGGATCGTGATCGCGACCTGCACGACCACCCGTGGCACGCCCGTACGATCATCCTGCAGGGTGGGTACGTCGAGCTGCGTCTGATCATGATCAATACCCATGGACAGGTCACTGAGCGTATCGAGCGCAGAACAGGCACCTGCGCAGCGCTGCGTCCTGGTGAGTATCACCGTATCGACCAGGTGGCAGCTGGCGGTGCTTACACCCTGTTCATCACCTGCCCTAAATCCTGTGACTGGGGCTTTCTGGTCAACGGGGTGAAAGTCCCTTGGGATGTTTACACCGCAGATGACAGCGCTTCGTTTGAGTCCAGCAGGGTCGCCGGCGACAAGTAG MPPSVFVIALRRLTLLIGAPMKETLWRAFAVIVSRPCVAAWIIRRAQRTPYQHITSADGQERYMGRWWLFDGYDRARQQPKHRWFPWSVRVHHILCEDRDRDLHDHPWHARTIILQGGYVELRLIMINTHGQVTERIERRTGTCAALRPGEYHRIDQVAAGGAYTLFITCPKSCDWGFLVNGVKVPWDVYTADDSASFESSRVAGDK identified by Glimmer2 ; Cytoplasmic Class 3 NC_004633 Plasmid_pDC3000A PSPTOA0071 NP_808729 29171545 Protein 72879 73307 transcriptional regulator, GntR family ATGATTAACCACAGAACGCAAAAAATGCACGCTCAGCAGGTGCTTGAACACCTGGCCTACGGCTTGGCACAGCCAATAGCGCTGCCCCGCGAGACCATTGAAGAAGTGCTTCGCGAAGCCATCATGGATGGACGACTTGAACCGGGTGAACGGCTTACGCAGCAAGCCATTGCCAATGCCTTCCAGGTCAGCCGGATGCCGGTGCGCGAAGCCCTGCGGTCATTGGAGACGCAGGGTTACATCGCGACGGAGTATCACAAAAGTTATCGGGTCACGAACGGCCATGACCTGCCCCAGTGCGGCCACCTGCCTGGCTTGCTGAGGTGCGTTGCAGAACGCCATACGCAGCTGGGCGACCTCGAATCAAAAGTGGCCTTTGAAAATGAAATCCTGCACGTCCTGGGCCGGCTGCGCCCTACCCCTTGCTGA MINHRTQKMHAQQVLEHLAYGLAQPIALPRETIEEVLREAIMDGRLEPGERLTQQAIANAFQVSRMPVREALRSLETQGYIATEYHKSYRVTNGHDLPQCGHLPGLLRCVAERHTQLGDLESKVAFENEILHVLGRLRPTPC identified by match to PFAM protein family HMM PF00392 ; Cytoplasmic Class 3 PF00392 GntR, Bacterial regulatory proteins, gntR family. This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins can be divided into six sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships.. COG1802 GntR, Transcriptional regulators [Transcription]. Transcription NC_004578 Chromosome PSPTO_0001 NP_789863 28867244 Protein 339 1874 dnaA chromosomal replication initiation protein NA GTGTCAGTGGAACTTTGGCAGCAGTGCGTGGAGCTTTTGCGCGACGAGCTGCCGGCCCAGCAATTCAACACTTGGATCCGTCCGCTACAGGTCGAAGCCGAAGGCGACGAGTTGCGTGTGTACGCACCCAACCGCTTTGTTCTCGATTGGGTCAATGAAAAATACCTCGGCCGTTTGCTTGAGCTTCTCGGCGAACGTGGTCAAGGCATGGCGCCCGCTCTTTCCTTATTAATAGGAAGCAAGCGCAGCTCAGCGCCGCGTGCCGCACCGAATGCGCCATTGGCTGCTGCAGCGTCCCAGGCGTTGTCTGGCAATTCGGTCAGCAGCGTTTCAGCGTCTGCACCGGCCATGGCCGTTCCTGCACCGATGGTTGCAGCGCCTGTGCCTGTGCATAACGTCGCCACTCACGACGAGCCGTCACGCGACAGCTTCGATCCGATGGCAGGCGCCAGCTCGCAGCAGGCGCCGGCCCGTGCCGAGCAACGTACGGTGCAGGTCGAAGGTGCGCTCAAGCACACCAGTTACCTGAACCGCACATTCACCTTCGAGAATTTCGTCGAGGGTAAATCCAACCAGCTGGCACGCGCTGCCGCCTGGCAGGTTGCCGACAACCCCAAGCACGGCTACAACCCGCTGTTCCTTTATGGTGGCGTGGGCCTTGGTAAAACTCACTTGATGCACGCTGTGGGTAATCATCTGCTGAAGAAGAACCCGAACGCCAAGGTTGTCTACCTGCATTCGGAGCGCTTTGTAGCGGACATGGTCAAGGCCTTGCAGCTCAACGCAATCAACGAGTTCAAGCGGTTCTACCGCTCGGTTGATGCGTTGCTGATCGATGACATTCAGTTTTTCGCTCGCAAGGAACGTTCACAGGAAGAGTTTTTCCACACGTTCAACGCGCTGCTGGAAGGTGGACAGCAGGTCATTCTGACCAGCGACCGCTATCCAAAGGAAATCGAAGGCCTGGAAGAGCGACTCAAGTCCCGCTTCGGCTGGGGGCTGACCGTCGCGGTCGAGCCACCGGAGCTTGAGACACGCGTAGCGATCCTCATGAAGAAAGCAGATCAGGCCAAGGTCGATCTGCCTCACGATGCGGCGTTTTTCATCGCCCAGCGTATCCGTTCCAACGTCCGTGAACTCGAGGGCGCGCTCAAGCGTGTCATTGCCCACTCGCACTTCATGGGTCGCGATATCACCATCGAGCTGATTCGCGAGTCGCTGAAAGATTTGCTGGCGTTGCAAGACAAGCTGGTGAGTGTGGATAACATTCAGCGAACCGTGGCCGAGTACTACAAGATCAAGATCTCCGACCTGCTGTCCAAGCGTCGTTCCCGTTCCGTAGCCCGACCGCGTCAAGTGGCCATGGCACTTTCCAAGGAACTCACCAACCACAGCCTGCCGGAAATCGGCGATGTGTTTGGTGGCCGGGACCATACGACTGTTCTGCACGCGTGCCGGAAGATCAACGAACTCAAGGAATCCGACGCGGATATCCGTGAGGACTACAAGAACCTGCTGCGCACTCTGACTACGTGA MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGERGQGMAPALSLLIGSKRSSAPRAAPNAPLAAAASQALSGNSVSSVSASAPAMAVPAPMVAAPVPVHNVATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLTT Cytoplasmic Class 3 TIGR00362 DnaA chromosomal replication initiator protein DnaA equivalog 4.1e-171 DNA metabolism DNA replication, recombination, and repair PF00308PF08299 Bac_DnaA, Bacterial dnaA protein..Bac_DnaA_C, Bacterial dnaA protein helix-turn-helix domain.. COG0593 DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004578 Chromosome PSPTO_0002 NP_789864 28867245 Protein 1913 3016 dnaN DNA polymerase III subunit beta NA ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAATTGGTCGCCGGCGTGGTAGAACGCCGCCAGACCTTGCCGGTTCTTTCCAATGTGCTTCTGGTCGTGCAAGGCCAGCAGCTGTCGCTGACCGGTACTGACCTGGAAGTCGAGCTGGTTGGCCGTGTTCAGCTGGAAGAGCCTGCCGAACCTGGGGAAATCACCGTTCCCGCGCGCAAGCTTATGGACATTTGCAAAAGCCTGCCCAATGATGCGCTGATCGACATCAAGCTTGATGACTCGAAACTGATCGTGAAGGCAGGTCGCAGCCGGTTCACGTTGTCCACGCTGCCTGCCAACGATTTCCCGACGGTGGAAGAAGGCCCCGGCTCGCTGACGTTCAATCTGGTGCAAAGCAAACTGCGTCGCCTGATCGAGCGCACCAGCTTTGCGATGGCTCAGCAGGATGTTCGCTATTACCTTAACGGCATGCTGCTTGAAGTCAGTGCCGGAATCTTGCGTGCAGTGGCTACCGATGGCCACCGTCTGGCAATGTGCTCGATGTCAGCCGATATCGAACACGCCGACCGTCATCAGGTCATCGTGCCTCGTAAAGGTATTCTGGAGATGGCGCGTTTGCTGACCGAGCAGGACGGCATGGTCAGCATCGTGCTGGGTCAGCATCACATCCGCGCCACCACCGGTGAATTTACCTTTACCTCGAAACTGGTCGATGGCAAGTTCCCGGATTACGAGCGTGTGTTGCCCAAGGGTGGCGACAAGCTGGTACTGGGCGATCGTCAGTCCCTGCGTGAAGCGTTCAGCCGCACCGCGATTCTGTCCAACGAGAAGTACCGTGGCATTCGTCTGCAACTGGCTAACGGCCAACTGAAAATTCAGGCCAACAATCCTGAGCAGGAAGAGGCAGAAGAAGAAATCGGCGTCGAGTACAACGGTGAGGCGTTGGAGATCGGTTTCAACGTGAGCTACTTGCTCGACGTGCTGAGCGTCATGACCACCGAACAGGTTCGCCTGATTCTCTCTGACTCCAACAGCAGCGCTCTGGTGCAAGAGTCGGATAACGACGATTCCGCCTACGTTGTCATGCCGATGCGTCTGTAA MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPAEPGEITVPARKLMDICKSLPNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLKIQANNPEQEEAEEEIGVEYNGEALEIGFNVSYLLDVLSVMTTEQVRLILSDSNSSALVQESDNDDSAYVVMPMRL Cytoplasmic Class 3 TIGR00663 dnan DNA polymerase III, beta subunit equivalog 2.7e-118 2.7.7.7 DNA metabolism DNA replication, recombination, and repair PF00712PF02767PF02768 DNA_pol3_beta, DNA polymerase III beta subunit, N-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold..DNA_pol3_beta_2, DNA polymerase III beta subunit, central domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold..DNA_pol3_beta_3, DNA polymerase III beta subunit, C-terminal domain. A dimer of the beta subunit of DNA polymerase beta forms a ring which encircles duplex DNA. Each monomer contains three domains of identical topology and DNA clamp fold.. COG0592 DnaN, DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004578 Chromosome PSPTO_0003 NP_789865 28867246 Protein 3039 4142 recF recombination protein F NA ATGTCTCTTAGTCGCGTCTCGGTCACCGGGGTGCGCAATCTGCACCCGGTGACCCTCTCCCCCTCCCCGCGTATCAATATCCTTTACGGTGCCAACGGCAGCGGCAAAACCAGTGTGCTGGAAGCGATCCATCTGCTGGGCATCGCCCGCTCGTTTCGCAGCAGTCGTCTGCTTCCCGTTATTCAGTACGAGCAGCCGTCATGTACGGTTTTCGGGCAGGTTGATCTCGCGCAAGGCGGCCACAGCAATCTGGGTGTTTCACGCGATAGGCAGGGTGAATTTCAGATTCGCATCGACGGCCAGAATGCACGCAGCGCTGCGCAGCTTGCCGAGATCCTGCCGCTGCAGTTAATCAATCCTGATAGCTTCCGATTACTTGAGGGCGCGCCGAAGATTCGCAGGCAGTTTCTGGACTGGGGAGTGTTCCACGTGGAACCTCGCTTCATGTCCACCTGGCAGCGCCTGCAGAAGGCCCTCAAGCAGCGAAACTCGTGGCTTCGGCATGGTACACTTGACGCCGCTTCGCAGGCGGCATGGGACCGGGAGCTGTGTTTGGCAAGTGACGAGATCGATGAGTTTCGTCGAGCCTATATCAAGGCATTGAAGCCCGTCTTTGAAAAGACTTTGAGCGAACTTGTTGAACTTGAAGGTTTGACCCTTAGCTACTACCGAGGATGGGACAAGGAAAAAGAGCTGAGCACTGTGCTCGCCTCCTCCCTGAATCGCGATCAGCAAATGGGCCACACCCAGGCAGGACCACAACGTGCTGATCTGCGCCTTAGATTAGGTGCCCACAACGCGGCAGATATCTTGTCACGTGGTCAGCAAAAATTGGTGGTCTGTGCACTGCGTATTGCTCAAGGACACCTGGTCAGCCAGGTCCGTCGCGGCCAGTGTATTTACCTGGTGGATGACTTGCCCTCCGAACTGGACGACAACCATCGACGCGCGCTTTGCCGCTTGCTGGAAGAATTACGCTGCCAGGTATTTATCACCTGTGTAGATCAAGAATTTTTGAGGGAAGGCTGGCAGACGGATACGCCAGTCGCATTGTTCCACGTGGAACAAGGCCGTATCACCCAGACCCACGACCATCGGGAGTGA MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQPSCTVFGQVDLAQGGHSNLGVSRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALKQRNSWLRHGTLDAASQAAWDRELCLASDEIDEFRRAYIKALKPVFEKTLSELVELEGLTLSYYRGWDKEKELSTVLASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTDTPVALFHVEQGRITQTHDHRE Cytoplasmic Class 3 TIGR00611 recf DNA replication and repair protein RecF subfamily 2.1e-140 DNA metabolism DNA replication, recombination, and repair PF02463 SMC_N, RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.. COG1195 RecF, Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004578 Chromosome PSPTO_0004 NP_789866 28867247 Protein 4147 6564 gyrB DNA gyrase subunit B NA ATGAGCGAAAACCAAACGTACGACTCGTCCAGCATTAAAGTGCTGAAAGGACTTGATGCCGTACGCAAGCGTCCCGGAATGTACATCGGTGATACAGACGATGGCAGCGGTCTGCACCATATGGTGTTCGAGGTGGTTGATAACTCGATCGACGAAGCATTGGCAGGCCATTGCGACGACATCAGCATCATCATCCATCCAGACGAATCTATCACCGTGCGCGACAACGGCCGCGGTATTCCGGTAGACGTGCATAAAGAAGAAGGCGTGTCGGCAGCCGAAGTCATCATGACCGTGCTCCACGCGGGTGGTAAGTTCGATGACAACTCCTACAAAGTATCCGGCGGTTTGCACGGTGTAGGTGTTTCCGTGGTCAACGCCCTTTCAGAACTTCTGTTGCTGACAGTGCGTCGCAGCGGCAAGATCTGGGAACAGACCTACATTCACGGTGTTCCACAAGAACCGATGAAAATCGTCGGCGAAAGCGACAGCACCGGCACCCAGATTCACTTCAAGCCATCTGCTGAGACCTTCAAGAATATCCACTTCAGCTGGGACATTCTGGCCAAGCGGATCCGTGAACTGTCGTTCCTGAACTCCGGTGTTGGCATCGTCCTCAAGGACGAGCGTAGCGGCAAGGAAGAACTGTTCAAGTACGAAGGCGGTTTGCGTGCGTTCGTTGAATACCTGAACACCAACAAGACGCCGGTCAACGAAGTGTTCCACTTCAATGTCCAGCGCGATGACGGTATTGGCGTCGAGATTGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCTGTTGTGCTTCACCAACAACATTCCACAGCGCGATGGCGGCACTCACCTGGTGGGGTTCCGATCCGCACTGACGCGTAACCTGAACAACTACATCGAGCAGGAAGGTCTGGCCAAGAAGCACAAGGTCGCGACCACCGGTGACGATGCGCGTGAAGGTCTGACTGCAATTATCTCGGTCAAAGTACCTGATCCGAAGTTCAGCTCGCAGACCAAAGACAAGCTGGTTTCGTCCGAAGTCAAAACTGCAGTCGAACAGGAAATGGGCAAGTACTTCTCCGACTTCCTGCTGGAAAACCCGAACGAAGCCAAAGCCGTCGTCGGCAAGATGATCGACGCAGCCCGTGCCCGTGAAGCCGCGCGCAAGGCCCGTGAGATGACTCGCCGTAAAGGCGCGCTGGACATCGCCGGCTTGCCAGGCAAACTGGCTGACTGCCAGGAAAAAGACCCTGCCCTCTCCGAACTGTACCTGGTGGAAGGGGACTCTGCTGGCGGATCAGCCAAGCAGGGACGTAACCGTAGAACCCAGGCCATCCTGCCTCTTAAGGGCAAGATTCTGAACGTTGAAAAAGCACGCTTCGACAAGATGATCTCTTCTCAGGAAGTGGGCACCTTGATCACCGCGCTGGGCTGTGGCATTGGCCGCGAAGAGTACAACATCGACAAGTTGCGCTATCACAACATCATCATCATGACCGATGCTGACGTCGACGGCTCGCACATCCGCACCCTGCTGCTGACCTTCTTCTTCCGTCAGTTGCCGGAGCTAATCGAGCGTGGCTACATATACATCGCTCAGCCGCCGCTGTACAAGGTCAAGAAAGGCAAGCAGGAGCAGTACATCAAGGACGACGAGGCCATGGAAGAATACATGACCCAATCGGCCCTTGAAGACGCCAGTCTGCACCTCAGCGAGTCTGCACCGGGTATCTCGGGCACCGCGCTGGAGAAACTGGTTCACGACTTCCGCATGGTCATGAAAACCCTCAAGCGCCTCTCGCGTCTGTACCCACAGGAATTGACCGAGCACTTCGTCTACCTGCCGCCAATCACCCTGGAGCAGCTATCCGACCACGAGGGCATGCAAGCCTGGCTGGCACTGTTCGACGTGCGTCTGCGCACTGGCGAGAAGTCGGGTCTGGTCTACAAAGCCAGCCTGCGCGAAGACCGTGAGCGTAACGTCTGGCTGCCAGAGGTCGAACTGATCTCCCACGGCCTGTCGAATTACATCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAGACCGTCACGGCCCTGGGCGCGCAGATAAGCACGCTGCTGGAAGAAGGCGCGTACGTGCAACGTGGCGAGCGCAAAAAGCCCGTCACCGAGTTCAAACAAGCCCTCGCCTGGCTGATGGCTGAAAGCACCAAGCGTCATACCATCCAGCGCTACAAAGGACTGGGTGAAATGAACCCGGATCAGCTCTGGGAAACCACTATGGACCCAAGCGTGCGTCGCATGCTCAAAGTCACTATCGAAGACGCCATTGGCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAACCACGCCGTGACTTCATCGAGAGCAATGCGCTGGCGGTGTCCAACCTGGACTTCTGA MSENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSELLLLTVRRSGKIWEQTYIHGVPQEPMKIVGESDSTGTQIHFKPSAETFKNIHFSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTPVNEVFHFNVQRDDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDEAMEEYMTQSALEDASLHLSESAPGISGTALEKLVHDFRMVMKTLKRLSRLYPQELTEHFVYLPPITLEQLSDHEGMQAWLALFDVRLRTGEKSGLVYKASLREDRERNVWLPEVELISHGLSNYITFNRDFFGSNDYKTVTALGAQISTLLEEGAYVQRGERKKPVTEFKQALAWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAVSNLDF Unknown Class 3 TIGR01059 gyrB DNA gyrase, B subunit equivalog 0 5.99.1.3 DNA metabolism DNA replication, recombination, and repair PF00204PF00986PF02518 DNA_gyraseB, DNA gyrase B. This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to pfam01119..DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus. The amino terminus of eukaryotic and prokaryotic DNA topoisomerase II are similar, but they have a different carboxyl terminus. The amino-terminal portion of the DNA gyrase B protein is thought to catalyse the ATP-dependent super-coiling of DNA. See pfam00204. The carboxyl-terminal end supports the complexation with the DNA gyrase A protein and the ATP-independent relaxation. This family also contains Topoisomerase IV. This is a bacterial enzyme that is closely related to DNA gyrase,..HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.. COG0187 GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]. DNA replication, recombination, and repair NC_004578 Chromosome PSPTO_0005 28867248 Protein 7092 8798 type I restriction-modification system, M subunit, putative NA TTGTACAATCAGGCACACTTTTTTCTGATATGCCCATGCTGGATGGCAGTAGTCACTGGCGTTGGGCTTCGTGCTTTTATAGGGATTGATTTACCCATGGCTGACAAGTTGTCACTCGAAACGCTGGAGTCTTGGCTCTGGGAATCCGCGAACATTCTGCGCGGTTCCATCGACTCTTCCGACTTCAAGAACTACATCTTCGGCCTGCTCTTTCTCAAACGCTACAACGACGTGTTCGACGAGCGTGTCACCAAGCTGAGGGAAGAGGAAAACCTGAGCTATGGCGAAGCTCAGGAGGAAATCGAGGACAAATGGGGCAAGTACCCTATCAGTGCCCGCTGGTTTGACTTGATTTCACGTACCGAGAATATCGGGGAGGCTCTGGACAAGGCGTTCGCGACCATTGAGGCCAACAACCCCGAATTGCAACACGTACTGACCGCTACCCAGTATGGTGACAAGCGAGTGCTGGCGGATGCCACCTTGCAGCGCCTGCTGCGTCACTTTAACCAGTACAAATTGGGCAATGACGACCTGTATAAGGCCGACATGCTGGGCGATGCTTACGAGTATTTGATCAAGCAGTTTGCCGACGATGCGGGTAAGAAAGGTGGCGAGTTCTATACGCCAAAGGCAGTGGTGCAACTGGTGGTTGAGTTGATTGATCCGCGACCGGGGCACAGTGTGTATGATCCCACCTGCGGCAGTGGTGGTATGTTGGTTGAGAGCGCCCATCATGTATCTGGTTTGCCCGATGGCACCTTGATGGGCAAGCCTAATGTGCTGCTGTACGGGCAGGAAAAGAACCTAGGCACCTGGGCCATTGCCAAGCTCAATCTTTACCTGCACAACATGCATGCATCTATTGAACGTGGAGATACGCTGGTCGAACCCAAACACCTCGACGGCGATTACCTGAAGACATTCGACAGGGTTATTGCTAATCCTCCGTTCTCAGCCAAATCCTGGTGGACTCCGCTGGAGTTGAGCAACGAAAACGAGCAGGAGAATGGCAAGAAGGTCAAAGCGCCCAACTATAAGCAGGTCAGCGATCCCTATGGTCGGTTAGTTTATGGCGTCCCGCCACGGGGCTATGCTGACCTTGCCTTTGCTCAGCATATGCTGGCTAGCCTCAAGGCTGATGGCCGCATGGGCGTTATCCTGCCCCATGGAGTGCTGTTTCGAAGTGGCGAGGAAGGCAAGATCCGCGAAGGACTGCTGTTCGGGACTGGCGCCGCCAGCGGCAACCAGCCGGGCGACGTGATTGAAGCCATCGTCGGCCTGCCCTCAGCCCTGTTCTACAACACCGGCATCCCGGCTTGCGTGTTGATCCTGAACAAGCAAAAACCCTCTGCCCTAAAGGACAAGGTCATCATCATTGACGGCAGCCGAGACTATCTAGAAGGTAAGGCGCAGAACAGCCTACATGCTGAAGATATCTTGCGCATTGTCAGCACCCACAAGGCGGCATTTGAGCAGCAAGTTGAGGTCGAAAACTATTGTCGGTTGGTGACTCTGGACGAAATCCGTAGCAATGACGGTAACCTCAACATTGTCCGTTACATCGATAACGGTGAGTCCGACGAGGTCGTAAATGTGGCTGCCACTTTGGCGCATATGGCGACCCTGGCCAAGGAGGAAGCGCAGATTGATCAGCGGCTCAATCGCTATTTGATGGAGTTGGGACTGCTGGAGACTGGGGTATGA MYNQAHFFLICPCWMAVVTGVGLRAFIGIDLPMADKLSLETLESWLWESANILRGSIDSSDFKNYIFGLLFLKRYNDVFDERVTKLREEENLSYGEAQEEIEDKWGKYPISARWFDLISRTENIGEALDKAFATIEANNPELQHVLTATQYGDKRVLADATLQRLLRHFNQYKLGNDDLYKADMLGDAYEYLIKQFADDAGKKGGEFYTPKAVVQLVVELIDPRPGHSVYDPTCGSGGMLVESAHHVSGLPDGTLMGKPNVLLYGQEKNLGTWAIAKLNLYLHNMHASIERGDTLVEPKHLDGDYLKTFDRVIANPPFSAKSWWTPLELSNENEQENGKKVKAPNYKQVSDPYGRLVYGVPPRGYADLAFAQHMLASLKADGRMGVILPHGVLFRSGEEGKIREGLLFGTGAASGNQPGDVIEAIVGLPSALFYNTGIPACVLILNKQKPSALKDKVIIIDGSRDYLEGKAQNSLHAEDILRIVSTHKAAFEQQVEVENYCRLVTLDEIRSNDGNLNIVRYIDNGESDEVVNVAATLAHMATLAKEEAQIDQRLNRYLMELGLLETGV Unknown Class 3 TIGR00497 hsdM type I restriction-modification system, M subunit equivalog 1.7e-49 2.1.1.72 DNA metabolism Restriction/modification PF02384PF01170 N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes..UPF0020, Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.. COG0286 HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]. Defense mechanisms NC_004578 Chromosome PSPTO_0006 28867249 Protein 8861 10168 type I restriction-modification system, S subunit, EcoA family NA ATGGGGGTAATTGGCGATTTTGTAACTGCGCTGCAAGCAGGTGTTAGCGTCAATGCTTTTGAAACTGACTCTGGCTGCACAGAGGGCGAGCTTGGTGTGCTGAAGACCAGTGCTGTACTCCGTGGTAGATTTTTTGCGGAGCAGTACAAGGTAGTCGTCGCGGAAGACATGGGAAGAGTGGCAACAAGCGTTGTCGGAGACCGGATCATCATCAGTCGCATGAATACTCCTGCGCTTGTTGGTGAGTCAGGCTATGTGACAAAGGATGAGCCCAATCTCTTCCTACCTGATCGCCTTTGGCAAACTGAGCCTTCAGACCGTCCACACTCACAGCGTTGGCTGTCTTACTGGTTGCAGCATCCTGGGGTTCGCCGATTGATTGCTGCCAGTGCAACTGGCACCAGCAACAGCATGAAGAACATCTCGAAAGAGACAGTGTTGTCGCTGCCTGTTCCTCGTACCCCACTGCCCGAACAACAAAAGATCGCCGCCATCCTCACTGCGGTTGACGATAAGTTGGACGTAATTTTCCGTCAGATTAAAGCCACACAGGCTCTGAAACAGGGCCTGATGCAAGCCCTGTTCAGCCGGGGCGTGGGTACCCAAGATACTACTGGTCGTTGGATTCAGCATACCGAGTTCAAGGACAGTGAACTCGGCACGATTCCAGCGCTATGGGATGTTGGCGTGATAGCGGATTACGTATCAGCTCTTCGTTCAGGGGTCAGTGTTAACGCAGAAGATCGTATGCATGGTGATGATGAGATCGGTGTCCTCAAGGTGAGTTGCGTACTCCGTGGTGGGTTCTATCCAAATTGTCATAAGACAGTTGTCCCCGAGGAGCGAGAGCGCGTCGCTGAGCCCGTTTTACAGGGACGTATTATCGTCAGTCGAGCGAACACTCCTGCATTAGTCGGTGAATCAGCGTATGTCAATTCTGCGTGGCCCAACTTGTTTCTCCCAGACAAACTCTGGCAAATCGAGCCCTCTGAAAGCCCCCATTCGATAAAGTGGCTGTCTTTTTATTTGCAGTCACCATTTGTTCGTCAAGAAATCAGTAAGGCAGCAACGGGCACAAGTGGCAGCATGAAGAACATCTCCAAGCCAGCATTTTTAAGCATTCGGATGCCTTTAGTACCGCTAGCTGAGCAAGAGCACATTGCAGCGATTCTTTCTGACGTTACATCCAAAATTGAAGCCTTGAACAGTAAGCAAAACCATTTCCAAACCCTCAAACGCGGGCTGATGCAAAAACTGCTAACCGGCGAATGGCGGGTCAAGATCGATAGCCCTACCGGTACGGTCTGA MGVIGDFVTALQAGVSVNAFETDSGCTEGELGVLKTSAVLRGRFFAEQYKVVVAEDMGRVATSVVGDRIIISRMNTPALVGESGYVTKDEPNLFLPDRLWQTEPSDRPHSQRWLSYWLQHPGVRRLIAASATGTSNSMKNISKETVLSLPVPRTPLPEQQKIAAILTAVDDKLDVIFRQIKATQALKQGLMQALFSRGVGTQDTTGRWIQHTEFKDSELGTIPALWDVGVIADYVSALRSGVSVNAEDRMHGDDEIGVLKVSCVLRGGFYPNCHKTVVPEERERVAEPVLQGRIIVSRANTPALVGESAYVNSAWPNLFLPDKLWQIEPSESPHSIKWLSFYLQSPFVRQEISKAATGTSGSMKNISKPAFLSIRMPLVPLAEQEHIAAILSDVTSKIEALNSKQNHFQTLKRGLMQKLLTGEWRVKIDSPTGTV Unknown Class 3 PF01420 Methylase_S, Type I restriction modification DNA specificity domain. This domain is also known as the target recognition domain (TRD). Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity subunit (this family), two modification (M) subunits and two restriction (R) subunits.. COG0732 HsdS, Restriction endonuclease S subunits [Defense mechanisms]. Defense mechanisms NC_004578 Chromosome PSPTO_0007 28867250 Protein 10179 11063 hypothetical protein NA ATGGACGAAATCATCCCCCTGCCCTCAGATCCTCTGCCTGACCTTCAGCGCACCGTGCAGCGCAAGCTTGGGCGCTGCATATTGCAGTCGCAGCAGTACGAGCGGCTGCTGAAGGCCATGGTGGCCCATGGCGAGTTGAGTGGCCCTCCGGAACGACTTCAGGCGATTCGCGACGAGAAGGTTGCCTGTGCCGATAAGAAAACTCTGGGTACCTTGGTGGGGATGCTGACCGAGAGCTATCTGAAACTGCCGGACTTGTCTGATGAGCCAGAGCAAGCGGAGCCAATTGATCGGGTATGGGTTAGCTTCCGATGTCAGATGGAGTTAACCGAAGAACGTTATGCCGAGACCAAGGCTGCGCTGAAGGAGTTGGTCGACCTGCGTAACGAGTTGGTGCACCACTTCCTTCAGCGCTTCGACCTTTGGGGCGTCGATGGCTGTATAGCCGCTGAGTCATATCTCGATGAAAGTTACGAAACCATCGACGGCCACTACCTGACGCTGCGCGACTGGGCCAAATCCATGGATGAGGCTCGACAGCTTATGGTGTCCTTTATGCAAACCCAAGAGTATAGGGATGCCGTTATCAACGGTATTTGGCTAGATGGCATCGTACACTGGCCCAGCAGTGGGATAACTGCCTGCTTGCGTGAAGCGGAAACTAAGCTGGCCCATGCAGGTTGGACACCTCTTTTCGAGGCTATTCGTTGGATTGCCAAGACCTATCCAGAGCTGACGCCGAAGCGCTATGGCTGCGGTAGTTGGCGTCATGTCATCCATGAGTCGCAGCAGTTTGAAATTCGTAAGCAAAGCCAAGCCGATAATGGCCCTACGGTGGTTTGGTATCGAAGTCGCCCGAGGGAAACCTCCAAGGAACAGGAGTAA MDEIIPLPSDPLPDLQRTVQRKLGRCILQSQQYERLLKAMVAHGELSGPPERLQAIRDEKVACADKKTLGTLVGMLTESYLKLPDLSDEPEQAEPIDRVWVSFRCQMELTEERYAETKAALKELVDLRNELVHHFLQRFDLWGVDGCIAAESYLDESYETIDGHYLTLRDWAKSMDEARQLMVSFMQTQEYRDAVINGIWLDGIVHWPSSGITACLREAETKLAHAGWTPLFEAIRWIAKTYPELTPKRYGCGSWRHVIHESQQFEIRKQSQADNGPTVVWYRSRPRETSKEQE Unknown Class 3 NC_004578 Chromosome PSPTO_0008 28867251 Protein 11067 14366 type I site-specific deoxyribonuclease, HsdR family NA ATGAGCCAGTCACCGGAGAAAGTCGGGGTTGAACTGCCCGCCATTAATTGGCTGGTCAAGCTGGGCTACACCCATCTATCCAGTAATCAGGTACAGGTTGAATATCGTCACCTGGCACCGGTATTGGACGATGTGTTGCAGGCTCGACTGCTGATCCTCAACCCGTGGCTGGAGAGCGTACCCGGTGGCATCCCTACCGCACTGATCGAGCTACGTAAACGTCTCAACGATGAGCTGTTGCCCGCGAATAAGGCGTTCTGGGAACAGGTGGTGCACCGTTCGGATATTCAGGTGAAGGACGTCGAAGGCAGGCCGCGTAGTGTGCGTTTCTTCGACGCCAGTGATGCCGCCAACAACGACTTCCATGTGGTTGATCAGTATGTGGGGCGCAACGCTGATGGGGATTTTTTCCGTCCCGACCTACTCCTGTTTGTGAATGGCCTGCCCCTGGCCATCATCGAATGCAAAGCCAGCCATCACCGTCTGGATGAGGCCTTGGGGCAACTGGATGGCTATCAGAACTGTTTCCCAACCCAGTTTGTATTCAACCAGGTATGCGTTGGGCTTAATCGGCGTGAGGGGGCATATGGTGCGATCCTTACCAAGCCTGCGTACTACGCCCGCTATCGGTTGCAGGCGCAGGAATCTGCTGCTGTAGCTGCTTTGCTGGGCGATGTCCCGAGTGAGCAGGAAAGCCTGCTGTGGGCATTGTTCGAGCCGAGTCGCTTCCTGCAACTGATTACACATTTTGCGCTGTTCGAAACCCGCGACGGCAAGACAATGAAAAAGCTGCCGCGCTATCAACAATGGCGGGCCGTGCGCAAAACGTTGGATCGCCTGTGTGCTCCAAAACCCATGGGCGGTGTTGTCTGGCACACCCAGGGTAGCGGTAAGTCCTTGACCATGGCCCTGCTCGCTCGCATGTTGCGTGCCGATAGCACCGGTTTGAACAACCCTACTGTGTTGGTACTGACCGACCGCAAAGACCTCGACAAACAGATCTTCGATACTTTCCATGCAGTGGGCATCAGTGCTATTCAGGCCGTGTCGGTTGAAGGCTTGCTGAAGATGTTGTCCAACGACTACGGCAGTGTGTTCACCAGCACGGTGCAGAAGTTCCAGGAGAACGAGCAGCCCGGTGAGCAGCCTGCTGTGACTCCTGATGAGGAAGACAATGCCCTGCAAGCAACCCGGCACCGGCGGATTCGCGAGGAGAAGGACTTCTTCATCCTGCATGAGCGCAATGTTCGCCACCGGCAAGTGGATGAGAACGGTGTGCTGGTGAAAGCCAAGTGGGAAGAAATCAGCCGGGAGAAGGTACATTTCCGGGTGTTGAGTACCAAATCCAATTTCTATGTGCTGGTCGATGAAGCTCACCGTAGCCAGTACGATTTCCTCGCGGCTTTTATGCGCGCCAGTTTGCCCAACGCCAAGTTCATTGCCTTCACAGGTACGCCGCTGCTGCAAGAGGACAAACACACACTGGGTGAGTTTGGCGGTGGTGAATACATCGACGAATACCGCCTGCATGAAGCGGTGGCGGATGGCGCGACCCTGTCCATCAAATACCAGGATGCCTGGGTAGCATTGTCGGCCAACGCTGAATTGGATGCTGCATTCAAAGAGCAGTTCTCTGGCCAGAGTGAAGCTCGCCAGCACGAGCTTAAGCGCGAACTGCTGCGCCGCTGGCGTCAGGCCGGTAACCGTATGGAACAGGTCGCTGAACATCTGGTCGAGCACTTCCTCAGTAACGTAAAGGCCAAGGGCTTGAAGGCCATGCTGGTGTGCGACGGACGCGATATGGCAGTGGGTTACAAGGATCTGCTCGATGCAATCATGGCCGAGCGAGTGCAAAAAGGGCTGCCAACCTTTGACAGCAAGGTGGTTATTTCCCTGGCCAGCATCACCGCTTCCCGCACGGGTGCTTCTGCTATGGAGGAGGCATCAGAGTACGAGGTCGACCTCGACAAGATCCAAAGCATCGAGGAACGGGTCAAGGCCGAAGTGAAAGCCGGAAACACCCCGGTGGCCATGCCGTCCGAGCAGATTGGCAACTTTGTCAGCAAGCTGTTCCCCCTGCCCTACGGAGAGGAAAGTAGTGGGTTGGATGGTAAACCGCAGGCGAACAACGTTGGGCTGATCATTGTCTCCGACATGCTCCTGACCGGGTGGGATGCCCCGATTGTCGGCACTATGTACCTCGACAAACCGCTCAAGGAACACACCCTTTTGCAGGCTATCGCACGGGTGAACCGCACCCTGCCCGGCAAGAATGCCGGTTACATCGTGGATTACCACGGAGTGGTCGAGCACCTCGACCATGCGCTGAAAATTTACGGCGGCGAAGTGAAGCCTTCACAGGTCTGGGAAGGTGTCGAAACCGAACTGCCCAAGCTGCAAGCCACGCTTGACCGCATACTTAAGCTGCTGCCGAAAAAACATGATCCGGTTGCGCAGCGTGAGGGGTACAAGACTGACGCCGAGCGTTTCCTAGATCCAGCTACCAGACTGGACATGGTCGAAGAGTTCCTGGACTTGGTGAAGCAGTTCAACCGCTCTGTGGACATCATTCTGCCGGATGTGCGCGGCGTGCCCTTCAAGCCCTACTTCACCCTGTTAGGTGAAATACGGTTGATGCTGCGGGACAAGCTGCCAGGTAATACCTACAAGGAGCGCATCACCAAGCTGGAGTCTGTACTGCTTCAACAGCTGCTGGATGAGTACGTTGCCGCCAGTCCGGCTAAGAGCCTATTGGGCCATGAGGTGTCGATTCTTGATGCCAGCGACATGGCGCGCCTGAAGCAGCTGGCCAGCCCTGGTAGCCGAGCCCTGGTGATGAAGAACCAGCTGAAACATACAATTGTCACCGGCAAGGACAAAGACCCTGCATTCTTCGACAAGCTGGCTGAGGAGCTGCAAAAGCTGCTGGAAGAAGAAAAGGCGGGTCGCATTACCCAGGCTAAATTTCTGGAGCAACTGGAATTGTTCGGTCAGCGCATCCAGGACAAGGACAACACCGGATTTATCAAACCCGCACATTCAGCGGTGTATCACTACCTAACCGCGCTACTGGCCGAGGACACGGCCAGGGTGGCAACGACCAAACTGTTCGAGGATGGAGAGCTGAGCCGGACGGTCGCCACCGACAACTGGAAGAAGATGCCGGATCTGCACCCGGACATCAGAGACCATCTGCGCGGGTTGTTGATGCCGCTGGCGGGGTGGGAGCGCTCAGTAGCACGTGAACACGCCAAGCGAATCTTGATGTATAGGAATTTCAATAATTCCTATACAGGGTAA MSQSPEKVGVELPAINWLVKLGYTHLSSNQVQVEYRHLAPVLDDVLQARLLILNPWLESVPGGIPTALIELRKRLNDELLPANKAFWEQVVHRSDIQVKDVEGRPRSVRFFDASDAANNDFHVVDQYVGRNADGDFFRPDLLLFVNGLPLAIIECKASHHRLDEALGQLDGYQNCFPTQFVFNQVCVGLNRREGAYGAILTKPAYYARYRLQAQESAAVAALLGDVPSEQESLLWALFEPSRFLQLITHFALFETRDGKTMKKLPRYQQWRAVRKTLDRLCAPKPMGGVVWHTQGSGKSLTMALLARMLRADSTGLNNPTVLVLTDRKDLDKQIFDTFHAVGISAIQAVSVEGLLKMLSNDYGSVFTSTVQKFQENEQPGEQPAVTPDEEDNALQATRHRRIREEKDFFILHERNVRHRQVDENGVLVKAKWEEISREKVHFRVLSTKSNFYVLVDEAHRSQYDFLAAFMRASLPNAKFIAFTGTPLLQEDKHTLGEFGGGEYIDEYRLHEAVADGATLSIKYQDAWVALSANAELDAAFKEQFSGQSEARQHELKRELLRRWRQAGNRMEQVAEHLVEHFLSNVKAKGLKAMLVCDGRDMAVGYKDLLDAIMAERVQKGLPTFDSKVVISLASITASRTGASAMEEASEYEVDLDKIQSIEERVKAEVKAGNTPVAMPSEQIGNFVSKLFPLPYGEESSGLDGKPQANNVGLIIVSDMLLTGWDAPIVGTMYLDKPLKEHTLLQAIARVNRTLPGKNAGYIVDYHGVVEHLDHALKIYGGEVKPSQVWEGVETELPKLQATLDRILKLLPKKHDPVAQREGYKTDAERFLDPATRLDMVEEFLDLVKQFNRSVDIILPDVRGVPFKPYFTLLGEIRLMLRDKLPGNTYKERITKLESVLLQQLLDEYVAASPAKSLLGHEVSILDASDMARLKQLASPGSRALVMKNQLKHTIVTGKDKDPAFFDKLAEELQKLLEEEKAGRITQAKFLEQLELFGQRIQDKDNTGFIKPAHSAVYHYLTALLAEDTARVATTKLFEDGELSRTVATDNWKKMPDLHPDIRDHLRGLLMPLAGWERSVAREHAKRILMYRNFNNSYTG Unknown Class 3 TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family subfamily 4.9e-93 3.1.21.3 DNA metabolism Restriction/modification PF04313PF04851 HSDR_N, Type I restriction enzyme R protein N terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA..ResIII, Type III restriction enzyme, res subunit.. COG0610 COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]. Defense mechanisms NC_004578 Chromosome PSPTO_0009 28867252 Protein 15741 14512 ISPsy3, transposase NA ATGAAGCCTGCTTACCCACCGCTGCTGCTTCAGATGAGTCCTGCCTACACGCCTCGACCGC