LOCUS 6264404 bp dna circular UNK DEFINITION Pseudomonas aeruginosa PAO1 chromosome, complete genome ACCESSION NC_002516 COMMENT Product name confidence: Class 1: Function experimentally demonstrated in P. aeruginosa. Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene. Class 4: Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences. COMMENT Subcellular localization confidence: Class 1: Subcellular localization experimentally demonstrated in same species. Class 2: Subcellular localization of highly similar gene experimentally demonstrated in another organism. BLAST expect value of 10e-10 for query within 80-120% of subject length. Class 3: Subcellular localization computationally predicted by PSORTb V2.0. FEATURES Location/Qualifiers source 1..6264404 /db_xref="taxon:208964" /mol_type="genomic DNA" /strain="PAO1" /organism="Pseudomonas aeruginosa" /sub_strain="PAO1-UW" gene 483..2027 /locus_tag="PA0001" /name="dnaA" CDS 483..2027 /db_xref="GI:15595199" /function="DNA replication, recombination, modification and repair" /protein_id="NP_064721" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="chromosomal replication initiator protein DnaA" /translation="VSVELWQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPN RFVLDWVNEKYLGRLLELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPP VAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPA VRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLY GGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSV DALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFG WGLTVAVEPPELETRVAILMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIA HSHFMGRPITIELIRESLKDLLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSV ARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNL LRTLTT*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: DNA metabolic process [goid GO:0006259] [evidence ISS]; GO_process: regulation of DNA replication [goid GO:0006275] [evidence IEA]; " gene 2056..3159 /locus_tag="PA0002" /name="dnaN" CDS 2056..3159 /db_xref="GI:15595200" /function="DNA replication, recombination, modification and repair" /protein_id="NP_064722" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="DNA polymerase III, beta chain" /translation="MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSL TGTDLEVELVGRVVLEDAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAG RSRFTLSTLPANDFPTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLL EVNGGTLRSVATDGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIV LGQHHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSN EKYRGIRLQLSNGLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT EQVRFILSDSNSSALVHEADNDDSAYVVMPMRL*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: DNA metabolic process [goid GO:0006259] [evidence ISS]; GO_component: DNA polymerase III complex [goid GO:0009360] [evidence IEA]; " gene 3169..4278 /locus_tag="PA0003" /name="recF" CDS 3169..4278 /db_xref="GI:15595201" /function="DNA replication, recombination, modification and repair" /protein_id="NP_064723" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="RecF protein" /translation="MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIH LLGLARSFRSARLQPVIQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQN ARSAAQLAETLPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALR QRNSWLRHGKLDPASQAAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDL TLSYYRGWDKDRDLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQ KLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCV DPQLLKDGWRTDTPVSMFHVEHGKVSQTTTIGSEA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: DNA metabolic process [goid GO:0006259] [evidence ISS]; GO_process: SOS response [goid GO:0009432] [evidence IEA]; " gene 4275..6695 /locus_tag="PA0004" /name="gyrB" CDS 4275..6695 /db_xref="GI:15595202" /function="DNA replication, recombination, modification and repair" /protein_id="NP_064724" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="DNA gyrase subunit B" /translation="MSENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFE VVDNSIDEALAGYCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHA GGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVG ETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEELFK YEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIP QRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKF SSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKARE MTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKG KILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHI RTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDA SLHVNEHAPGLSGAALEKLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLAN ESAMQGWLEKFQARLTAAEKSGLTYKASLREDRERHLWLPEVELVAHGLSSYVTFNRD FFASNDYRSVSLLGDQLNSLLEDGAYVQKGERKRPISAFKDGLDWLMAEGTKRHSIQR YKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNA LAVSNLDV*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: DNA metabolic process [goid GO:0006259] [evidence ISS]; GO_component: DNA topoisomerase complex (ATP-hydrolyzing) [goid GO:0009330] [evidence IEA]; " gene complement(7018..7791) /locus_tag="PA0005" /gene_synonym="plsC" /name="lptA" CDS complement(7018..7791) /db_xref="GI:15595203" /function="Fatty acid and phospholipid metabolism" /protein_id="NP_064725" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="lysophosphatidic acid acyltransferase, LptA" /translation="MSTVQAIRTVLFYLLLSASAFVWGTLSFFIAPILPFRARYRFVV QNWCRFAIWLTRVVAGIRYEVRGLENIPEKPCVILSKHQSTWETFFLSGFFEPLSQVL KRELLYVPFFGWALALLKPIAIDRSQPKLALKQLAKQGDECLKKGAWVLIFPEGTRIP VGQMGKFSRGGTALAVNAGLPVLPIAHNAGQYWPKAGWAKYPGTIQVVIGPAMHAEGE GPRAIAELNQRAEAWVSETMAEISPIQQRVSHPEPSVVS*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: cellular lipid metabolic process [goid GO:0044255] [evidence ISS]; " gene complement(7803..8339) /locus_tag="PA0006" /gene_synonym="yaeD" CDS complement(7803..8339) /db_xref="GI:15595204" /function="Hypothetical, unclassified, unknown" /protein_id="NP_064726" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSRSLLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQA GWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDGCDCR KPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDCQPVLVKTGKGVRTLGKPLP EGTLIFDDLAAVASALLQ*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 8671..10377 /locus_tag="PA0007" CDS 8671..10377 /db_xref="GI:15595205" /function="Membrane proteins" /protein_id="NP_064727" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="hypothetical protein" /translation="VKRLKKTLHLSSLSLASLALSSAALAAAPVMLDQGKEWTESHRQ DFYSRDQGSQVMPLPWLKALRQPDGTPFLADSLARYGYLPNPKAPAEGLPVGFTVAGT GARQMVGMTCSACHTRQIEVKGTAYRIDGGPAIVDFQAFLADLDRAVGPLTSDDAAFD AFAKPILGANPPPGARDALLAAVKEWYEPYHTLIERALPKDTWGPARLDAVSMIFNRL TGLDIGTAPPYLIPDNIKAADAPVRYPFLWNAARQNKTQWPGFAANGNDLLGLARNVG EVYGVFATFHPQKSKFHLLGMDYLKINSANFHGLGKLEDLIKKIGPPKWPWAVDKHLA RKGALIFARKTDEGGCVECHGIRIKDLVLWDTPLRDVGSDSRQHAILDGQVQTGVMEG ARMPFGQPLKATDGAFDVLAVAVAGSILQHFVPILGEKHDAKAAAVKPESVMTDETRQ LLTAFQKPVRTQADPYPYESRVLQGIWAAAPYLHNGSVPTLEELLKPAAERVESFPVG SAYDVDKVGLAAQQTQFGSYVLKTTGCEQRDSGNSRCGHEYGTSLSAEEKRALLEYLK VL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(10434..12488) /locus_tag="PA0008" /name="glyS" CDS complement(10434..12488) /db_xref="GI:15595206" /function="Amino acid biosynthesis and metabolism; Translation, post-translational modification, degradation" /protein_id="NP_064728" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="glycyl-tRNA synthetase beta chain" /translation="MSAKDFLVELGTEELPPKALNSLGEAFLSGIEKGLKAAGLSYAA ARFYAAPRRLAVLVEQLAVQQPDRTVNLDGPPLQAAFDASGNPTQAALGFAKKCGVDL QQIDKSGPKLRFIQTIAGQPAAGLLPGIVEASLNELPIPKRMRWAARREEFVRPTQWL VMLFGDDVVECEILAQKAGRESRGHRFHNPDNVRISSPAAYLEDLRGAHVLADFAERR ELIAKRVAELAAEQQGSAIVPPSLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTM QDNQKYFCLLDANGKLLPRFITVANVESKAPENIVSGNEKVVRPRLTDAEFFFKQDKK QPLESFNERLRNVVFQAQLGTVFEKAQRVSGLAAYIAERIGGNAQNASRAGILSKCDL ATEMVGEFPEMQGIAGYYYATHGGEAEDVALALNEQYMPRGAGAELPSTLTGAAVAVA DKLDTLVGIFGIGMLPTGSKDPYALRRAALGVLRILIEKQLDLDLVAAVNAAVEQYGD KVKAAGLAEQVLDFVFDRLRARYEDEGVDVAVYQSVRALKPSSPLDFDQRVQAVQAFR QLPEAEALAAANKRVSNILAKSEDEVPPNVDASLLVEAAEKALGSAVANAESEVAPLA AARDYRAALARLAALREPVDTFFADVMVNVDDAAVRANRYALLAKLRGSFLGVADISL LG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; GO_component: glycine-tRNA ligase complex [goid GO:0009345] [evidence IEA]; " gene complement(12488..13435) /locus_tag="PA0009" /name="glyQ" CDS complement(12488..13435) /db_xref="GI:15595207" /function="Amino acid biosynthesis and metabolism; Translation, post-translational modification, degradation" /protein_id="NP_064729" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="glycyl-tRNA synthetase alpha chain" /translation="VSQTTPAVRTFQDLILALQNYWAEQGCVVLQPYDMEVGAGTFHT ATFLRAIGPETWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVLKPNPENFQELYLG SLKAIGIDPLVHDIRFVEDNWESPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGIECYP VTGEITYGLERLAMYLQGVDSVYDLVWTDGPFGKVTYGDVFHQNEVEQSTFNFEHANV PKLFELFDFYESEANRLIALELPLPTYEMVLKASHTFNLLDARRAISVTERQRYILRV RTLARAVAQSYLQARARLGFPMATPELRDEVLAKLKEAE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; GO_component: glycine-tRNA ligase complex [goid GO:0009345] [evidence IEA]; " gene 13540..14091 /locus_tag="PA0010" /name="tag" CDS 13540..14091 /db_xref="GI:15595208" /function="DNA replication, recombination, modification and repair" /protein_id="NP_248700" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="DNA-3-methyladenine glycosidase I" /translation="MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGL SWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAW LELDDPAGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYA FMQASGMVMDHTQDCDRYAQLVG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: DNA metabolic process [goid GO:0006259] [evidence ISS]; GO_function: DNA-3-methyladenine glycosylase I activity [goid GO:0008725] [evidence IEA]; " gene 14235..15122 /locus_tag="PA0011" CDS 14235..15122 /db_xref="GI:15595209" /function="Cell wall / LPS / capsule; Antibiotic resistance and susceptibility; Adaptation, Protection" /protein_id="NP_248701" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="2-OH-lauroyltransferase" /translation="VEKFKGALVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSRE VVRINLSKCFPELSETELEKLVGQSLMDIGRTLTESACAWIWPPEKSLRYIREVEGME VLEEALASGDGLVGITSHLGNWEVLNHFYCSYAKPIIFYRPPKLKAVDELLKKQRVQL GNRVAPSTPEGILSVIKEVKKGGCVGIPADPEPARTAGLFVPYLGTTALISKFVPQLL SRGKARGVFFHAVRLPDGSGYKVILEAAPADMYDKDLEVSVAAMSRELAKYVRAYPSQ YMWSMKRFKNRPDGEKKWY*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: lipid A biosynthetic process [goid GO:0009245] [evidence IEA]; GO_function: lauroyltransferase activity [goid GO:0008913] [evidence ISS]; " gene 15207..15473 /locus_tag="PA0012" CDS 15207..15473 /db_xref="GI:15595210" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248702" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPD LTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 15620..16273 /locus_tag="PA0013" /gene_synonym="yhhQ" CDS 15620..16273 /db_xref="GI:15595211" /function="Membrane proteins" /protein_id="NP_248703" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSASSPAAWRGTLAGLIAFHIFIIIASNYLVQLPITLFGWHTTW GAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALL EFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFF VAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA* " /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(16335..16607) /locus_tag="PA0014" CDS complement(16335..16607) /db_xref="GI:15595212" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248704" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSKQERSVPSYVEYPYEQAILYVHRNASANEMLESVQERLRALL GLLHALERIEVRTGLGVPIQRVAHILVTLGGDALTLLTAAHRATTS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(16900..17217) /locus_tag="PA0015" CDS complement(16900..17217) /db_xref="GI:15595213" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248705" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MMIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERAAEHLQRCV EQDPKYSAGWKLLGKARQAAGDLAGARQAWEQGLATAATHGDKQAEKEMTVFLRKLDR ART*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(17366..18739) /locus_tag="PA0016" /name="trkA" CDS complement(17366..18739) /db_xref="GI:15595214" /function="Transport of small molecules" /protein_id="NP_248706" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="potassium uptake protein TrkA" /translation="MKIIILGAGQVGGTLAEHLASEANDITVVDTDGDRLRDLGDRLD IRTVQGKASFPTVLRQAGADDADMLVAVTNSDETNMVACQVAYTLFNTPTKIARVREP AYLTRTGLFDNEAIPVDVLISPEQVVTNYIKRLIEHPGALQVIDFAEGKAQLVGIKAY YGGPLVGQELRQLREHMPNVDTRVAAIYRRNRPIIPQGDTVIEADDEVFFIAAKAHIR AVMGEMRRLDDSYKRIIIAGGGNVGERLAEAIESRYQVKIIERSPLRCRHLSDTLDST IVLNGSASDRDLLLEENIGETDVFLALTNDDEANIMSSLLAKRLGASKVMTLINNPAY VDLVQGGEIDIAISPQLATIGTLLAHVRRGDIESVHSLRRGAAEAIEVVAHGDAKSSK VIGRSINEIKLPPGTTIGALVRDEEVLIAHGDTRIESGDHVLLFLVDKKYIRDVERLF QAGLTFF*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_process: potassium ion transport [goid GO:0006813] [evidence RCA]; GO_function: potassium ion transmembrane transporter activity [goid GO:0015079] [evidence RCA]; GO_function: glutamyl-tRNA reductase activity [goid GO:0008883] [evidence IEA]; " gene complement(18767..20071) /locus_tag="PA0017" /gene_synonym="sun; fmu" CDS complement(18767..20071) /db_xref="GI:15595215" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248707" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MNPRLAACQALAAVLAGRASLSGALPPQLDKVAPRDRGLTQELA FGAARWQPRLQALAARLLQKPFKAADTDIHALLLIGLYQLLYTRIPPHAAIGETVGCA DKLKKGWAKGVLNAVLRRAQREGETLLAEVDRDPSARLGHPRWLLKALKQAWPEQLDA LCAANNAHPPMTLRVNRRHGERDAYLAELAEAGIKARACDYSRDGIQLAAPRDVRELP GFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDL EESRLVRVRENLQRLGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD IKLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTP GARELDLPGPWGMKQPHGRQLLPQVEGHDGFYYAKLIKISAR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: rRNA (cytosine) methyltransferase activity [goid GO:0016434] [evidence IEA]; " gene complement(20068..21012) /locus_tag="PA0018" /name="fmt" CDS complement(20068..21012) /db_xref="GI:15595216" /function="Amino acid biosynthesis and metabolism; Translation, post-translational modification, degradation" /protein_id="NP_248708" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="methionyl-tRNA formyltransferase" /translation="MSQALRIVFAGTPEFAAEHLKALLDTPHRIVAVYTQPDRPAGRG QKLMPSAVKSLALEHGLPVMQPQSLRNAEAQAELAALRADLMVVVAYGLILPQAVLDI PRLGCINSHASLLPRWRGAAPIQRAVEAGDAESGVTVMQMEAGLDTGPMLLKVSTPIS AADTGGSLHDRLAALGPKAVIEAIAGLAAGTLHGEIQDDALATYAHKLNKDEARLDWS RPAVELERQVRAFTPWPVCHTSLADAPLKVLGASLGQGSGAPGTILEASRDGLLVACG EGALRLTRLQLPGGKPLAFADLYNSRREQFAAGQVLGQ*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; GO_process: methionyl-tRNA aminoacylation [goid GO:0006431] [evidence IEA]; " gene complement(21067..21573) /locus_tag="PA0019" /name="def" CDS complement(21067..21573) /function="Translation, post-translational modification, degradation" /product_synonym="formylmethionine deformylase" /protein_id="NP_248709" /note="GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; GO_function: formylmethionine deformylase activity [goid GO:0008463] [evidence RCA]; GO_function: peptide deformylase activity [goid GO:0042586] [evidence IEA]; " /db_xref="GI:15595217" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="polypeptide deformylase" /translation="MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPG IGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENV DRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKL EKQHRQQA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 21712..22737 /locus_tag="PA0020" CDS 21712..22737 /db_xref="GI:15595218" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248710" /localization_and_confidence="Periplasmic, Class 1 (primary); Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISG KFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYVDGQPRLVLNRGESRGTIKLSPK IRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQ EVRLGDRLFPTEERAVNSTFMPGEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDG LAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKLSYALVLMASRPLSV TDRVQNP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: asexual sporulation [goid GO:0030436] [evidence IEA]; " gene 22872..23960 /locus_tag="PA0021" /gene_synonym="smf" CDS 22872..23960 /db_xref="GI:15595219" /function="Membrane proteins" /protein_id="NP_248711" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="conserved hypothetical protein" /translation="MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPA SAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGLRRHLLMWDDPGYPALLAEVADAP PLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFP RRNRIISGLSLGVLVVEASPASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIR DGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAPYTSEGLAAASGMTL PDVLATLSELELDGRVACEAGTWVHRSG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: DNA mediated transformation [goid GO:0009294] [evidence IEA]; " gene 24001..24558 /locus_tag="PA0022" /gene_synonym="yrdC" CDS 24001..24558 /db_xref="GI:15595220" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248712" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MISSFRAQCAARVVREGGVIAYPTEAVWGLGCDPWNEDAVYRLL ALKARPVEKGLIVVAANIHQLDFLLEDLPDVWLDRLAGTWPGPNTWLVPHQERLPEWV TGVHDSVAVRVTDHPLVQELCHLTGPLISTSANPAGRPAARTRLRVEQYFHDELDAIL GGALGGRRNPSLIRDLVTGQVIRPA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(24568..25545) /locus_tag="PA0023" /name="qor" CDS complement(24568..25545) /function="Energy metabolism" /product_synonym="NADPH:quinone reductase" /protein_id="NP_248713" /note="GO_function: L-lactate dehydrogenase activity [goid GO:0004459] [evidence ISS]; GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_function: NADPH:quinone reductase activity [goid GO:0003960] [evidence RCA]; GO_function: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor [goid GO:0016655] [evidence IEA]; " /db_xref="GI:15595221" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="quinone oxidoreductase" /translation="MAKRIQFAAYGGPEVLEYRDYQPAEPGPREVRVRNRAIGLNFID TYYRSGLYPAPGLPSGLGSEGAGEVEAVGSEVTRFKVGDRVAYATGPLGAYSELHVLA EEKLVHLPDGIDFEQAAAVMLKGLTTQYLLRQTYELRGGETILFHAAAGGVGLFACQW AKALGVQLIGTVSSPEKARLARQHGAWETIDYSHENVARRVLELTDGKKCPVVYDSVG KDTWETSLDCVAPRGLLVSFGNASGPVTGVNLGILSQKGSLYVTRPTLGSYADTPEKL QAMADELFGLIERGDIRIEINQRFALAEAARAHTELAARRTTGSTVLLP*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 25736..26653 /locus_tag="PA0024" /name="hemF" CDS 25736..26653 /db_xref="GI:15595222" /function="Biosynthesis of cofactors, prosthetic groups and carriers" /protein_id="NP_248714" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="coproporphyrinogen III oxidase, aerobic" /translation="VTDRIAAVKTYLLDLQDRICAALEAEDGKARFAEDAWERPAGGG GRTRVIGDGALIEKGGVNFSHVFGDSLPPSASAHRPELAGRGFQALGVSLVIHPENPH VPTSHANVRFFCAEKEGEEPVWWFGGGFDLTPYYAHEEDCVHWHRVARDACAPFGADV YPRYKEWCDRYFHLKHRNEPRGIGGLFFDDLNQWDFDTCFAFIRAIGDAYIDAYLPIV QRRKHTPFDERQREFQAYRRGRYVEFNLVFDRGTLFGLQSGGRTESILMSLPPQVRWG YDWKPEPGSEEARLTEYFLADRDWLAGQP*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_function: anthranilate synthase activity [goid GO:0004049] [evidence IDA]; GO_process: cofactor biosynthetic process [goid GO:0051188] [evidence ISS]; GO_process: chlorophyll metabolic process [goid GO:0015994] [evidence ISS]; " gene 26711..27535 /locus_tag="PA0025" /name="aroE" CDS 26711..27535 /db_xref="GI:15595223" /function="Amino acid biosynthesis and metabolism" /protein_id="NP_248715" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="shikimate dehydrogenase" /translation="MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFP GFARRFFEQGKGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDG AGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLA ERFADLGAVHGCGFAEVEGPFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAK EPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_function: 4-hydroxyphenylacetate 3-monooxygenase activity [goid GO:0018660] [evidence IDA]; GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: L-phenylalanine biosynthetic process [goid GO:0009094] [evidence ISS]; GO_process: tyrosine biosynthetic process [goid GO:0006571] [evidence ISS]; GO_process: tryptophan biosynthetic process [goid GO:0000162] [evidence ISS]; GO_process: chorismate biosynthetic process [goid GO:0009423] [evidence IEA]; " gene 27646..28632 /locus_tag="PA0026" /name="plcB" CDS 27646..28632 /db_xref="GI:15595224" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248716" /localization_and_confidence="Extracellular, Class 1 (primary); Unknown, Class 3 (primary)" /product="phospholipase C, PlcB" /translation="MKTFARLAAGLCICAIASQANAWSQPTHKNIVKDALAFMNSSYA TEEMRQAYRFYVSAAGSEAQAGEILGQAAFDVDDFKDTRLGGWWVGYEHAPLWGAASG IVNYTSYWHFLNLARDGDSHGNPHGGYDYRYHKVDGGIADVDWYAMVYLYNRELKRED FDTTEAHYRQGTRSDWQEHYGDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHAT GDVAQPHHVWITSANGHSSWEGWVDDHYASEKLNDPAAVANLVGRYDPSKSIRDLLTQ TGQVAYARPEPLYDTSYETRLRVAKELIPESIALTVTVLTKGANSFDAPTAL*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: molecular_function [goid GO:0003674] [evidence IDA]; GO_component: cellular_component [goid GO:0005575] [evidence IDA]; GO_process: biological_process [goid GO:0008150] [evidence IDA]; " gene 28613..29899 /locus_tag="PA0027" CDS 28613..29899 /db_xref="GI:15595225" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248717" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="hypothetical protein" /translation="MHRLLSDRARGWRRALCGIVLGLLAWSAHGVPAKAPQDLRIDGE VLPGRSIDLLEQALSRVKFNTDPQQLRRGLVENRLLARAVEDQLTAQSRADLDASVEI EAGNLLEQVYGRRYREDLGPYLRQPRALSAERLREVLAPRSRGLVENSLLLDETQRRE AAGVELIGWQFPGQPAQVLDLLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDYLW YRLARDGFGPAERQGVRTLVRDKLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDA EAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRGGLAFDEAVRRYSLADDRDR DPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPLDD RSVRFEVNQAVAREQLAAQFETRLRNLLAGARVEGL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 29896..30498 /locus_tag="PA0028" CDS 29896..30498 /db_xref="GI:15595226" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248718" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VKRWLGVALGCSGLAIALACAGVLLAPADMAASSSSPSPARTVA ALPAVDDRPPPPAPVRSQAAAPAYEAEPPVAELDREQAIQFMQMLRDEGDPRSPPLGG LQPRQGATAQELADPKQYQAFEERQTRELVQAYTSGVQQIPEIRARIEAAEQGGERSA EEIDEARAALGQLEMMRDKLQRESPQLLPGDSAPTSPAAP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(30502..32055) /locus_tag="PA0029" CDS complement(30502..32055) /db_xref="GI:15595227" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248719" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable sulfate transporter" /translation="MWTRLLPFLAWLPGLHRGMLGREAWVGLNGAILALPQSMAYALI AGLPAEYGLYAAMLPVAIACLWGSSRYLVSGPTAAISVLLFSSVAPLAPLGSPQYVQA VLLLTFLAGAFQWLLGVLRVGSLVNFVSHSVMLGFTLGAALLIVLGQLPYLLGLAASG EGAAPGNGWRLLARFAEFDGPSLLVGGFSFALSLLVRRLRPRWPALLLGLLGGATLVW ALPGTFASVAHVQALSSALPGWSPLVFDSRSILDLLPAAVACGMLGLVTSLSIARALA ARQGDAFDANQEVRAQGLSNLLGPWLSASLSAGSFTRSGLNLEAGARSPLAGAFSALW VALLAVLGARLIEHVPLPAMAAGILLIAWGLIDRPALRALYRSGRAECLVAGLTALAT LLLPLQNAIYAGVLASLVFYLRRTSTPRVLRQRNDEEEVLRIEGSIFFGACDYLQRLM RQCDRPRLVLDARQVNFIDFAGAVLLQQEARRLHAEGRRLVLRHARPQVREALGRQAD EGCRLHYEG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: membrane [goid GO:0016020] [evidence IEA]; " gene complement(32060..32983) /locus_tag="PA0030" CDS complement(32060..32983) /db_xref="GI:15595228" /function="Transport of small molecules" /protein_id="NP_248720" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWSDIAVTN ATAAFLLESLGYQVKIDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFVASGQVE RLGRNLDGTRFTLAVPRYVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMI DANQFGLGDWKLVESSEQAMLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQ YFGDRGQVYTLARKGYAAQCPNPARLLANLRFDLDMENRLMSDALEGTATPASATRAW LKANPRVLEAWLQGVTSRDGGDALAAVRGQP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(33000..34511) /locus_tag="PA0031" /name="betC" CDS complement(33000..34511) /db_xref="GI:15595229" /function="Adaptation, Protection" /protein_id="NP_248721" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="choline sulfatase" /translation="MKTSPNILFIMADQMAAPLLPLHDPRSVLRMPHLSRLAERAVVF DSAYCNSPLCAPSRFTLVSGRLPTRIGAWDNAADFAADTPTYAHYLRNLGYRTALSGK MHFCGPDQLHGYEERLTSDIYPADYGWAVNWDEPEVRPSWYHNMSSVLQAGPCVRTNQ LDFDEEVVFKARQYLYDHVRQHAGQPFCLTVSMTHPHDPYSIPASYWNLYRDEDIPLP RQRFAQEEQDPHSQRLLKVIDLWDKPLPEERIRAARRAYFGACSYVDAQIGALLATLE KCGLADDTIVVFSGDHGDMLGERGLWYKMHWFEMAARVPLLVHAPARFAPRRIGASVS TVDLLPTLVELAGGQVDPRLPLEGRSLLPHLRDGSGHDEVIGEYTAEGTLSPLMMIRR GDYKFIYSEQDPCLLYDLRNDPQERENLAASPAHRGTFEAFLDEARRRWDIPAITRAV LDSQRRRRLVAAALARGRLASWDHQPWVDASQQYMRNHIDLDDLERRARFPQP*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: response to stimulus [goid GO:0050896] [evidence ISS]; GO_function: sulfuric ester hydrolase activity [goid GO:0008484] [evidence RCA]; GO_process: metabolic process [goid GO:0008152] [evidence RCA]; " gene 34624..35538 /locus_tag="PA0032" CDS 34624..35538 /db_xref="GI:15595230" /function="Transcriptional regulators" /protein_id="NP_248722" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MGERLMPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIK RLEKELATPLFQRVHRGIVLTDAGQLLLRHVAAGLETIDAGIAALGARQRHEVLQVAT DYAFAAYWLMPRLPRFHQAHPHLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHGEAH RLFREEVFPVCSPRLVEGLQLPLAKAHLARLPMLHLKPAQHARWFDWPALFEALAIDR QPIPAVLSFDNYTLLIQAAIAGQGVAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYA VLPERKRRQRLVDGFVDWLQAELQAGGA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" CDS complement(35905..36270) /db_xref="GI:15595231" /function="Two-component regulatory systems" /protein_id="NP_248723" /localization_and_confidence="Unknown, Class 3 (primary)" /product="Histidine phosphotransfer protein HptC" /translation="MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQER EQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRKLADAVDDLVTALGEL QCELHDWMTMTAPQGTAKS*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_component: membrane [goid GO:0016020] [evidence IEA]; GO_function: histidine phosphotransfer kinase activity [goid GO:0009927] [evidence ISS]; " gene complement(35905..36270) /locus_tag="PA0033" /name="hptC" gene complement(36278..36901) /locus_tag="PA0034" CDS complement(36278..36901) /db_xref="GI:15595232" /function="Transcriptional regulators; Two-component regulatory systems" /protein_id="NP_248724" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable two-component response regulator" /translation="MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARK KSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVS KRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: regulation of sporulation resulting in formation of a cellular spore [goid GO:0042173] [evidence IEA]; " gene complement(37087..37893) /locus_tag="PA0035" /name="trpA" CDS complement(37087..37893) /db_xref="GI:15595233" /function="Amino acid biosynthesis and metabolism" /protein_id="NP_248725" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="tryptophan synthase alpha chain" /translation="MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAG ADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGY FNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGD QRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAE HAAAVARLADGVVVGSALIDRIAKARDNAQAVKDVLALCGELAEGVRNAR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: 3-deoxy-7-phosphoheptulonate synthase activity [goid GO:0003849] [evidence ISS]; GO_process: amino acid metabolic process [goid GO:0006520] [evidence IDA]; GO_process: L-phenylalanine biosynthetic process [goid GO:0009094] [evidence IDA]; GO_process: tyrosine biosynthetic process [goid GO:0006571] [evidence IDA]; GO_function: tryptophan synthase activity [goid GO:0004834] [evidence IEA]; " gene complement(37890..39098) /locus_tag="PA0036" /name="trpB" CDS complement(37890..39098) /db_xref="GI:15595234" /function="Amino acid biosynthesis and metabolism" /protein_id="NP_248726" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="tryptophan synthase beta chain" /translation="MTSYRNGPDAKGLFGRFGGQYVAETLMPLILDLAREYEKAKDDP AFQEELAYFQRDYVGRPSPLYFAERLTEHCGGAKIYLKREELNHTGAHKINNCIGQIL LARRMGKKRIIAETGAGMHGVATATVAARFGLQCVIYMGTTDIDRQQANVFRMKLLGA EVIPVTAGTGTLKDAMNEALRDWVTNVDSTFYLIGTVAGPHPYPAMVRDFQAVIGKET REQLAEKEGRLPDSLVACIGGGSNAMGLFHPFLDDAGVQIVGVEAAGHGIDTGKHAAS LNGGVPGVLHGNRTFLLQDADGQIIDAHSISAGLDYPGIGPEHAWLHDTGRVEYTSIT DDEALEAFHTCCRLEGIIPALESSHALAEVFKRAPSLPKEHIMVVNLSGRGDKDMQTV MHHMQQESKA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: oxo-acid-lyase activity [goid GO:0016833] [evidence ISS]; GO_process: amino acid metabolic process [goid GO:0006520] [evidence IDA]; GO_process: L-phenylalanine biosynthetic process [goid GO:0009094] [evidence IDA]; GO_process: tyrosine biosynthetic process [goid GO:0006571] [evidence IDA]; GO_function: tryptophan synthase activity [goid GO:0004834] [evidence IEA]; " gene 39202..40089 /locus_tag="PA0037" /name="trpI" CDS 39202..40089 /db_xref="GI:15595235" /function="Amino acid biosynthesis and metabolism; Transcriptional regulators" /protein_id="NP_248727" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="transcriptional regulator TrpI" /translation="MSRDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLL EDDLGVALFGKDGRGVKLTDSGVRLRDACGDAFERLRGVCAELRRQTAEAPFVLGVPG SLLARWFIPRLDQLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPPWPADMQVFE LAPERMGPVVSPRLAQETGLAQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEALR YGQGFEHLYYLLEAAVAGLGVAIAPEPLVRDDLAAGRLAAPWGFIETDARLALWVPAR LHDPRAGRLAQWLREQLAG*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence IDA]; GO_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IDA]; GO_function: transcription regulator activity [goid GO:0030528] [evidence IDA]; " gene 40190..40405 /locus_tag="PA0038" CDS 40190..40405 /db_xref="GI:15595236" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248728" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSNHHTYKKIELVGSSKTSIEDAINNALAEAAKSIQHLEWFEVV DTRGHIENGAVGHYQVTLKVGFRIANS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 40589..40816 /locus_tag="PA0039" CDS 40589..40816 /db_xref="GI:15595237" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248729" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAY TLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 41113..42801 /locus_tag="PA0040" CDS 41113..42801 /db_xref="GI:15595238" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248730" /localization_and_confidence="Outer Membrane, Class 3 (primary)" /product="conserved hypothetical protein" /translation="VALHRLAFIFLCLPLMASAAPFTSPGDRDLIRDRQQRLLDEQRK RLEELQQLPGKGAPAAADASGGDERCFEIRRIELEGAGHLGESARRQLLAPYQGRCLG VGQLNALLKAVTDHYLDRGYVTTRAYLPQQDLASGTLRIIVVEGRLEGLDSSALASPR ELTMSFPGRTGELLDLRELEQLVDQLSRLPSRQAQLELVPGSEVGGSRVRLKGERDKP WRVSATRNNDGDVSTGEQQMGLGLDWDSPLGLADQLNLRANRDAVTDRWRHSDSQSLF YSLPWGWWTFTYGYSQSDYRTRNEASGFPFKLDGDSRSHQFRAERVLHRDGVSKTAMS LGLSHQRTNNYVEDTRLEDQSTRITETQLGFNHGRRIGSGFVNLDLGWQQGIGALGAQ GRGHPQAGDPNARYDKYSLTLSYLQPFQLWGERFSFDSLATGQRSEDVLFSPQRISLG GNSSVRGFKDQTLTGDSGGYWRNQLRWRRAVEWAPLRPWLQEYGVAFAYDVGVIRHDR YNDGASGRMSGNAIELDARGRYFAASVGFARSLERPSAIERREHPIYFRVDAFF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 42914..53521 /locus_tag="PA0041" CDS 42914..53521 /db_xref="GI:15595239" /function="Secreted Factors (toxins, enzymes, alginate)" /protein_id="NP_248731" /localization_and_confidence="Extracellular, Class 1 (primary); Outer Membrane, Class 3 (primary)" /product="probable hemagglutinin" /translation="MDIRSPLNQCIALSLAGILFLNPIVAAAAGLALDKAAGGNTGLG QAGNGVPIVNIATPNDAGLSNNHFRDYNVGANGLILNNATGKTQGTQLGGIILGNPNL KGQAAQVILNQVTGGNRSTLAGYTEVAGQSARVIVANPHGITCQGCGFINTPRATLTT GKPIMDGQRLERFQVDGGDIVVEGAELNVGNLEQFDLITRSAKLNAKLYAKNLNIVTG RNDVQADSLQATPRAADGSEKPQLAIDSSALGGMYAGAIRLVGTEQGVGVRLAGDMAA SGGDIRIDASGKLSLAQASSQGDLKIAAQAVELNGKTYAGGSAEIRSAEELVNRQSLA ARERIVLEAAHIDNAGVIEAGVEPDERRNARGDLELRSGTLRNAGSLVASRALEAKAS QALDNQGGSLKGATVRVDAGHLDNRGGKLLAEGELRVEASSLDNRQDGLLQSRDRAVV KTRGDLDNRGGQVIGLNDLEVGAATLDNGQQGLLGSQQSTRVSAQALVNRGDGEVSGK RVEARVGSLDNRGGKLIGDDLLVVASGAIDNRLGLFSAANRLDLRARSLDNSGKGTLS SRGGLEVSLGGLLDNRDEGNLLSQGAQRVTVGQLDNRAGGLLSSRSELNVHGASLDNR GGVLVADAGLSATGGAFDNRDGGSASGKAGVRVEVASLRNDQGGKLLSDGRLDLAANA VGNAGGRIAAKGDLQATLGSLAQQGGELVSEKTLKVAADTLDNSQSGLIAANGGIAIE ARQVDNRAGEISSTSKVAVNAREQLDNRGGKVIGDSGLRLTVQRLLNQAKGVLAGRDG LSLDGGELFNGDGGRLDSQNSLSVSLGGVLDNQGGALVSEGSLTARAARLDNRGGTFS SAGALALTSQAALDNQGGRLLSDAGVTLQGASLDNSRSGVISAKGAVDIRTGVLDNSR NGGIGSNAGITLVAARLDNGQQGRVSAKGLLDANLKGLDQRGGGVLISETGVTLDLNG GTLVNRDGGLIATPGALLLRQLGAVDNGAGGEISSDRAFTLAAASLDNRGGRLIGAAN LTLRIAQALDNSLAGVISGAAGLDIAAARLDNSAKGTLASRAGIDLRVDGALDNHAEG TVSGARLTLASASLDNSGKGLLSGNAGLSVATGALDNAEGGQLISQGVLDVSSADLDN RGGALSGKQSLRLSAANLDNRGGLLTSDGELELTAGRVDSADGGEISARGDLRLTVER LVQRQGRLVGERGVSLDLRGGDLDNQGGLISARGPLSIERLSVLDNRQGGEISSQQGF ELLARRIDNGQQGRIISAGKLRLDADALGNAGAGLLSGWQGLTVTGGSLDNSAGGTLS SKDGELAISLGGALDNHGQGALVSKGAQRIDAASLDNAQGIVSGESDVTLSIAGKLDN GQGGLVSAQRALSFERDDTLLNNAGGRINGGSLLLKGASLDNSDGQLISQGRLDAILG GALVNTGAARLASGGDLLLRSASVDNRGGKLVSQGLLEISAGSLDNSASGTLASQAGM SLRLGGGALRNQQDGLIFSQAGALDVQAGSLDNRQGTLQAQGDNRLRIGGALDNQGGR LDSRAGNLDLQSGSLDNGAGGVLNSAKGWLKLVTGLFDNSAGVTQAQSLEIRAGQGVR NQQGHLSALGGDNRIVTADFDNQGGGLYASGLLSLDGQRFLNQGAAAGQGGKVGAGRI DFSLAGALANRFGQLESESELHLRAAAIDNSGGSLRALGRSGSTRLVAGGLNNAYGVL ESANQDLDLQLGSLANAGGRILHTGNGTFGLDSGQVIRAGGELTTNGLLDIRASEWTN SSVLQAGRLNLDIGTFRQTAEGKLLAVQSFTGRGGDWSNDGLLASDGSFRLDLSGGYR GNGRATSLGDFALNAASLDLGNAASLAGGANVTLGAGNLLVNRGRITAAGDLVASAAS LNNYGTLGGGGNLRLNAPALLNERGLLFSGADMTLRAGDITNLYGDVYSLGRLDIARD DAGNRAASLRNLSGVIESGKDFSLRASLIENRRAVLESKSGLYTAKMEQTACIEGVNA GDCSGKRNAIWTITQRDKTEVTASSAMGQLLAGGDFAIDGGTLNNLSSLIGSGGNLTA NLEVLDNQGLETGELETIRVLRTARGGDIGGIDQKSRNFTNLYWYQSANFDPARAGEI PAALNAILSDWSFEYEFPSKGPTPISSGDQSYAAVIQAAGDVTVNASTRIDNGVTRPG YTFVGSGRQVGDSAVGGSGVSVVVPLTSQLPPDLARRQVNPVTLPGFSLPQGDNGLFR LSSRFAEDGNGSAALGAGADRTQGGSGVSVGQQGAGNAAGTWQGQGVRVDGLAGAANV QGQGGSTLGGSLPGVARVQGVPGNATPSASHKYLIETNPALTELKQFLNSDYLLSGLG MNPDDSKKRLGDGLYEQRLIRDAVVARTGQRYIDGLSSDEALFRYLMDNAIAYKDQLH LQLGVGLSAEQMAALTHDIVWLEEVEVNGEKVLAPVVYLAQAEGRLAPNGALIQGRDV KLVSGGDLHNVGTLRARNDLSATADNLDNSGLIEAGKRLDLLAGDSIRNRQGGVIAGR DVSLTALTGDVINERSVTRYDSALDGRTWERSFADSAARVEAANSLNVQAGRDIANLG GVLQSRGDLSLDAGRDVTVAAVEDRQGQTRWSTSRLQSVTQLGAEVSAGRDLNVSAGR DLTAVASTLEARRDIALSAGRDVTLAAAANEEHAYSKTRKVTYQEDKVAQQGTRVDAG GDLAINAGQDLRLIASQASAGDEAYLVAGDKLELLAANDSNYYLYDKKKKGDFGRKET RRDEVTDVKAVGSQISSGGDLTLLSGGDQTYQGAKLESGNDLAIVSGGAVTFEAVKDL HQESHEKSKGDLAWNSAKGKGQTDETLRQTQIVAQGNLAIKAVEGLKIDLKHIDQKTV SQTIDAMVQADPQLAWLKEAEQRGDVDWRMVQEVHDSWKYSNSGMGPATQIAVAIAAA AIGGMAAAGALSGAGVGASSFAMGAGVGAAGSLSGTAAVSLINNKGDLGKVLKDSFSS DSLKQIAIASLTGGLTAEYFDGILQTKTDPLTGKVTVDLSSLSGVGRFAANQAMQNAT STVLSQALGQGGSLNEALKSALYNSFAAAGFNFVGDIGQEYSLKPGDPSMVTMHALMG GLAAQVSGGDFATGAAAAGANEALVAKLDQAFKSLSPENREAMVTMGSQLVGVLAAAV RDPDVTGKALESAAWVAKNSTQYNFLNHQDVADLDNALQKCKSQGNCRQVEEEFKARS DENRRRLNGCVAVGNCAEIRAEIDAGSTALNELVARQETANPGGSDSDIAYGFLMGRN VVDWTTAGQLHLEQTANLWWNGNPQWQKEVGAYLDQTGFNPFGIGVPAMGGAAGKVTA KALMNALKAGELPKGEVAPGKANLPTIGALADAEAGMPYTHPVKLAAKATGTAGKIKI EAGAIPDANEVRAGQGLSGLGYDVTHQTTASAKGIQGQRTADLHVDGLGSIDVYTPKN LDPTKIVRAIEKKSNQAGGVLVQADLPSTDMSSIAARMWGKTNAQSIKTIFFQKPDGS LVRFDRPAGGG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 56546..56941 /locus_tag="PA0042" CDS 56546..56941 /db_xref="GI:15595240" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248732" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MPVLALRLTALAALVISVSGCVMEAYGSRARSDAQSWIGLPIQD VIKRFGEPERVTGDAARQKYVWKEYENYSHDYDYTYYEQGHGNTPNSSVLNQKTGTAN QSGYYTCIYEFFADASGRVVDATARGECR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(57212..58594) /locus_tag="PA0043" CDS complement(57212..58594) /db_xref="GI:15595241" /function="Membrane proteins" /protein_id="NP_248733" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MGYWRQRRALGGRRTAVRAPRGRLLLWCAQARRHPLSRRMESSM TLSLDLLLSLCTALAIGLLIGAERGWQERDHEDARQIAGIRTFSLAGLLGGFATLLAG ELGSAVWVALLLALAALAVAGYVSDVRRGGDQGMTTEIALLMTFLLGSLALTEQRLLA AAGGIVLTLLLSLKDKLHALLKRLTAEELSGTLKLLFISVVLLPVLPNQGYGPWAFFN PYLTWWMVVLIAALGFSAYLAIRLIGSRKGLLLTAVLGGLVSSTVMTLTLARLRERMP DALLACALLATSALMFPRILVEIGAIHPALLKELALPFAATTLVYLGGTLFHALRGGR ASQEAPDEPGLRNPFELLPALRFAALLSAILLLVEVGRRLFGDAGIYAVALLSGLADV DAITLSLARAAQGELDPGVASRGIALAALSNSLVKAGLVVLVGGKRLALQTLPFSLAG LLVGALLILL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 58786..60159 /locus_tag="PA0044" /name="exoT" CDS 58786..60159 /db_xref="GI:15595242" /function="Secreted Factors (toxins, enzymes, alginate)" /protein_id="NP_248734" /localization_and_confidence="Extracellular, Class 1 (primary); Extracellular, Class 3 (primary); Host Associated, Class 3 (secondary)" /product="exoenzyme T" /translation="MHIQSSQQNPSFVAELSQAVAGRLGQVEARQVATPREAQQLAQR QEAPKGEGLLSRLGAALARPFVAIIEWLGKLLGSRAHAATQAPLSRQDAPPAASLSAA EIKQMMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRD GSRIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAVMD KVALLRHAVESEVKGEPVDKALADGLVEHFGLEAEQYLGEHPDGPYSDAEVMALGLYT NGEYQHLNRSLRQGRELDAGQALIDRGMSAAFEKSGPAEQVVKTFRGTQGRDAFEAVK EGQVGHDAGYLSTSRDPGVARSFAGQGTITTLFGRSGIDVSEISIEGDEQEILYDKGT DMRVLLSAKDGQGVTRRVLEEATLGERSGHGEGLLDALDLATGTDRSGKPQEQDLRLR MRGLDLA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 60656..61342 /locus_tag="PA0045" CDS 60656..61342 /db_xref="GI:15595243" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248735" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSHSAKKALLPLLAVATLAGLAGCATETSTALPVQQVESVNRPY SGVRSPIAVGKFDNRSSYMRGIFSDGVDRLGGQAKTILITHLQQTNRFNVLDRDNMSE IQQEAAIKGQAQRLKGADYVVTGDVTEFGRKEVGDRQLFGILGRGKSQIAYAKVALNI VNISTSEVVYSTQGAGEYALSNREVIGFGGTASYDSTLNGKVLDLAMREAVNKLVNAV DSGAWKPQNQ*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 61373..61726 /locus_tag="PA0046" CDS 61373..61726 /db_xref="GI:15595244" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248736" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSKTITWTAALLGSMALAGCSGPKTLYQWEGYQAQVHEYFKGES KEAQAQALEADLEKIRAKNGAVPPGYHAQLGLLYSSIGKDDQMVREFETEKALFPESA TYMDFLLNNARGGAR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 61879..62388 /locus_tag="PA0047" CDS 61879..62388 /db_xref="GI:15595245" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248737" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVH QVSPAKLREIYGADAALYVTVSDYGTRYMVISSATIVTASAKLVDLRSGTTLWTGSAT ASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYG PRSPRYGSD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(62403..62786) /locus_tag="PA0048" CDS complement(62403..62786) /db_xref="GI:15595246" /function="Transcriptional regulators" /protein_id="NP_248738" /localization_and_confidence="Unknown, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MSFAQNLLRLRQQNALTQRQMAERLGITVSQLRHFETKGGHPSL VVLQTIAGRFAVPLDWLVCERSERQALPEDLRLQFEAIGRLRLDERRAIRALLDDLIR QYMAKRNAAAKPLPAACAEATETSP*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(63068..64729) /locus_tag="PA0049" CDS complement(63068..64729) /db_xref="GI:15595247" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248739" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRYARHASRYSLFTLAVSAALLPGAGWAANGDLAGARKPPSVAC SWNREAALSYEERRLDTPLPFSGANVVTHDQTPLAERIVKGAGFDGFEPAFAKRLCAA DGRTPVTSYAKALKLVTEEGRALWRAAVDRAQGRRAIPAGALPASDDRMLYWTRLYMT RTLRQWAPSFHLGKAQAQALQWRFERASRGQLDIDLPRRYAADGSRYRRMIISGFDVF TLGTPGTANTGLRNGNPSGATALALDGREFRLADGSLLRIEAYLLPVSYDPFNRGMQE DTLGPWFRPGPRRVDASITISQGGANQFWLEAWNGRFHGSSAGNDGIVYCPADSALPN YVLPLGSVTNPGTAPISLRGSGCNINPPRRWLGYDSASRWRQNLPAQFSKASLPVRQL LAADTWRGIERPPGATSQAAEGFDVTWHTNYDFFPDCANPRTENVPTNGVMNAMPDPS LVLPPNRRICARNGGGGDYLSNESAYRNTVLRDAFRLEIPAGHIHVPVMNNYYTGVPA SGGGARNDNAISDARYEAYRSAIVAQTRALLVGVGNALAQGAQAD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 65339..65479 /locus_tag="PA0050" CDS 65339..65479 /db_xref="GI:15595248" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248740" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MKRKMLAASLLLWMFSLTAQADCAVLGPGEDPCAGPVLGPTVCE CP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 66303..68135 /locus_tag="PA0051" /name="phzH" CDS 66303..68135 /function="Putative enzymes" /product_synonym="probable glutamine amidotransferase" /protein_id="NP_248741" /note="GO_function: catalytic activity [goid GO:0003824] [evidence ISS]; GO_process: phenazine biosynthetic process [goid GO:0002047] [evidence ISS]; GO_process: asparagine biosynthetic process [goid GO:0006529] [evidence IEA]; " /db_xref="GI:15595249" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="potential phenazine-modifying enzyme" /translation="MCGLAGWVDYTRKLDDEFPAIFAMTDTLALRGPDAEGIWKHRNA LLGHRRLAVIDLSGGVQPMSYRFPTGQEVTLVYTGEVYNHDALRERLRRAGHEFRTRS DTEVVLHAYLQWGERCCEYLTGMFAFAVFDGRDGHLLLVRDRLGIKPLYYARHREGLL FGSEIKSILAHPEFAARLDAVGLVDLLTLSRGTSQTPFREVQELLPGHLLSWRPNSQA KLRRYWEVRRQEHADDLQSTVQRTRELVTRALGAQLHADVPVCSLLSGGLDSTALTGI AQRIAKAEHGGDINSFSVDFVGQAEQFRSDDLRPDQDQPFALLAAQYIGSRHRTVLID NAELVCERAREEVFRAKDVPFTFGDMDTSLHLMFGEIRRHSTVAISGEGADELFGGYG WFRDPQAVAAARFPWASRVRLPAGFIDAGFNRRCDLLQYQQASYDDGLRQVEHLAGDS PEERRMREFSHLHLKRWMVLLLERKDRLSMCNGLEVRVPYTDHELVEYVYNVPWSIKS RDGEEKWLLKRACADYVPEAVLKRRKSPYPTSANLGYERFLRGSVRRLLEDAVNPVFG IVSREFLAAELEHPEGYFNTQVSRHNLETALALEGWLRLYGLSA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(68188..68616) /locus_tag="PA0052" CDS complement(68188..68616) /db_xref="GI:15595250" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248742" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYP LGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGC LMNIIHRLIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 69272..69526 /locus_tag="PA0053" CDS 69272..69526 /db_xref="GI:15595251" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248743" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MNHCFANGNKRTAAAAATVFLLLNGIELTGPAQDFVDIMVALVT REASVQDLEDWMFYWHRPFDAYNLPDSDAFERMVARLGIG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(69543..70091) /locus_tag="PA0054" /gene_synonym="yjiI" CDS complement(69543..70091) /db_xref="GI:15595252" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248744" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MDRKTLDDTSKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAA RDGRALDRMLLGAVVENNDKKRFALSADGQRIRAVQGHSHAAVAIAYAPAVPPAVLYH GTASRFLDSIRERGLVPGSRHHVHLSARRATALEVGRRYGSPVLLEIDARDMHLAGHL FHQAENGVWLTERVPVRFIREA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(70130..70636) /locus_tag="PA0055" CDS complement(70130..70636) /db_xref="GI:15595253" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248745" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSLSIYQASIPTFLRTLGNLSAILKKAAAHAEAKNIDPRIFIDA RLAPDMFPLARQVQIASDAAKGAGARLAGLEVPSYADTETTFDELQARIARTVEFLEG IREEQLDGAEERNVTLKVRGQEISFNGRDFLFGFALPNFFFHVTTAYAILRHNGVELG KMDFLGGA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(70702..71622) /locus_tag="PA0056" CDS complement(70702..71622) /db_xref="GI:15595254" /function="Transcriptional regulators" /protein_id="NP_248746" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MDRLTATRVFVEVIDSGSQTAAAERLDMSRAMVSRYLAELEEWV GARLLHRSTRRLSLTDAGAELLPQCREMLAVADAMQATGQTRRDSPRGTLRITSSLSF AQAWLTRAAAAFVERYPGTAIDLQVNSQVVNLVEERIDLALRIANQLDPNLIARRLGE CRSVICAAPDYLRRHGTPRRPEDLALHNCLTYSYFGRSLWQFERDGEPTSVPVGGSLS ANESTVLLEAAAAGAGISQQPLYSAAPLIRSGRLVALLPEWSPQVLGIHAVYASRRQM PPALRALLDFLVERMAADPHWDEAGPLALA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 71730..72617 /locus_tag="PA0057" CDS 71730..72617 /db_xref="GI:15595255" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248747" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSRHGLLRSLFAAAALLGAAGVFAASAEPLRLEVYNPGEKAIFA VSSELLVGQREAMLIDAQFSRADAEQLVKRIQASGKTLSTIYISHGDPDFYFGLDVLK AAFPEAKILATAQTVAHIQATKDAKLAYWGPILKDNAPTSLVVPEPLKGDQLKLEGHA LKVVDLKGPSPDRTVLWIPSLKTVVGGVLVESGSHVWTADTQTQASRQAWVAMLDRIE ALQPRRVVPGHFTGEEPKGLDGVRFTRDYLKALEAELPKARDSAALVEAMKRRYPNLP GEEGLELSAKVLKGEMQWP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 72680..73384 /locus_tag="PA0058" CDS 72680..73384 /db_xref="GI:15595256" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248748" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MNDLTLHYLYDPLCGWCYGASPLLAAACEVTGLDVRLHGGGMMT DANRQPVGAGLRHYVMPHDLRIAQLTGQPFGKDYFDGLLRDTSAVFDSAPPTAAVLAA EALDGLGAAMLARIQRAHYVEGRRIAERPVLLELGAELGLGEGFAEAFDACSGEPLRA HFADSRRLMNRLGAAGFPTFALERDGRLQVLDTGRYLGQPDDWRAFLETQLRLAGGSG AVGGAAAPLCRIDGCA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 73468..73923 /locus_tag="PA0059" /name="osmC" CDS 73468..73923 /db_xref="GI:15595257" /function="Adaptation, Protection" /protein_id="NP_248749" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="osmotically inducible protein OsmC" /translation="MSIHSSGGVDMKKTASAVWQGGLKDGKGTLSTESGALKDNPYGF NTRFEGAPGTNPEELIGAAHAGCFSMALSMMLGEAGLTAERIETRAEVTLDKQSDGFA ITAVHLVLRARVPGADAQTFEQIANKAKAGCPVSKVLNAKISLDASLDG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: response to stimulus [goid GO:0050896] [evidence ISS]; GO_process: response to oxidative stress [goid GO:0006979] [evidence RCA]; GO_process: response to oxidative stress [goid GO:0006979] [evidence IEA]; " gene 74034..74267 /locus_tag="PA0060" CDS 74034..74267 /db_xref="GI:15595258" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248750" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MKTIGLGIATLLFSATALAAPKPCEELKAEIETKIQSAGVTSYT LEIVRNDEVSDPNMVVGSCENGTKKIIYQKNDD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(74279..74716) /locus_tag="PA0061" CDS complement(74279..74716) /db_xref="GI:15595259" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248751" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLA ERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQINCYQQVVYDG FEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPPY*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(74773..75189) /locus_tag="PA0062" CDS complement(74773..75189) /db_xref="GI:15595260" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248752" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRTLLLAGGLLVLSGCSLLMPTPDPNRAWVDLDTQPDADLAAVE VDDKSWDRTRYFEVDPGTRELTVRYQFTVDPTNIGPVDSPLWRDCQLNLKFKDFSAGQ RYRLEAGHIGFRPWAKLYDQDNRELARGREGRCAKV*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 75281..76408 /locus_tag="PA0063" CDS 75281..76408 /db_xref="GI:15595261" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248753" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VLVGRRAVRVLCYVPPMPRRLRHPLADLRLPRWVPCLALLALSG CSTVSYYGQLASGQFALLRAREPAAAVIADPQRDARLRERLAKAEKARQFASERLGLP DNRSYRLYADIGRPYVVWNVFATPELSLQPVTHCFPIAGCVAYRGYYSEAAARAEAAR QRALGDDVYVGGVQAYSTLGWFDDPILSSMLRWDDERLATLIFHELAHQKFYLRDDTA FNESFATFVEQEGTRQWREYRGLPPADGREEKRREQFTALVLASRARLEALYAGPLDD AAKRAGKAAEFQRLRREYAALSQREWGGESPFKAWIDAPFNNAKLLPFGLYDQWVAAF AVLFRQVGGNWPAFYARVRALGQLPLAERQAALQRLAAAAP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(76416..77399) /locus_tag="PA0064" CDS complement(76416..77399) /db_xref="GI:15595262" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248754" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MTDNPFATPTAPVQPPAREVPATTQPYAFIAVLALVTCLSFAVS LGIQWYNDIGEIRQRFSEHLQLMAPHWFTGLVFYAAANLLVLHAYREKRQLVEFRPLA LLLIGYGLLNLVCGMLAGIGLAPLTLPFYQWVTAQSSYGVWLMAFNEAMSWVYLLLGS LLPLGLVLLGSRVNSPRLAEGEEARVAAWQVALGAALCFATLCFKLMQFLPYALLRYD EPWLYGLYLSGVALPAALLFGAVCTRLPARLQRFAAGRALLLAVVAMLLWSVALLAVG GGLALLMILGLAPAGIGYTLLVALLGVGLLALLWPIGRLATRWCYADQLAA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(77432..78097) /locus_tag="PA0065" CDS complement(77432..78097) /db_xref="GI:15595263" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248755" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MRDAALRYPNILFDLDGTLTDPREGITRSVQFALARLGIDEPDL ARLEHFIGPPLLQCFMQTYGFDEARAWEAVNHYRERFRVTGLYENRVFDGIPELLEAL VGRGHTLYVATSKPGVFAREIARHFAFDRHFKAIYGSELDGTRTHKEELIRHLLDSEG LAAEHCLMIGDRMHDLLGASRNGVACIGVGYGFGSEDELRAHQPTHYCADLAALRQVL ESH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: cellular metabolic compound salvage [goid GO:0043094] [evidence IEA]; " gene complement(78090..78632) /locus_tag="PA0066" /gene_synonym="yrdA" CDS complement(78090..78632) /db_xref="GI:15595264" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248756" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="VTIRSYQGKTPLLGERVFVDPSAVLVGDIEIGADSSVWPLVVIR GDMHRIRIGQRSSIQDGSVLHITHAGPFNPDGFPLSIGDEVTVGHKVLLHGCSIGNRV LVGMGSIVMDGAVIEDEVILGAGSLVPPGKVLESGFLYVGSPAKKARPLSDKERGFFA YTAGNYVKLKDLHIAEDYHA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: phenylacetate catabolic process [goid GO:0010124] [evidence IEA]; " gene 78710..80755 /locus_tag="PA0067" /gene_synonym="opdA" /name="prlC" CDS 78710..80755 /db_xref="GI:15595265" /function="Translation, post-translational modification, degradation" /protein_id="NP_248757" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="oligopeptidase A" /translation="VSANPLLQAYDLPPFSSIRPEHVKPAIERILADNRAAIARLLET QREQPTWKGLVLAMDELNDRLGAAWSPVSHLNAVCNSAELREAYEACLPELSAYSTEL GQNRALFEAYEALAKSPEAAGFDVAQKTILEHALRDFRLSGIDLPADKQKRYAEVQSR LSELGSRFSNQLLDATQAWTKHVTDEAALAGLTDSAKAQMKQAAEAKGLDGWLISLEF PSYYAVMTYADDRALREEVYAAYCTRASDQGPNAGQNDNGPVMEEILDLRQELAGLLG FANYAELSLATKMAESSDQVLSFLRDLAVRSKPFAARDLEQLRAYAAEQGCTELQSWD AGYYAEKLREARYSVSQEALRAYFPVDKVLSGLFAIVERLYGIQIRELHDFERWHADV RLFEILENGEHVGRFYFDLYARANKRGGAWMDGARDRRRDAQGRLIDPVAYLVCNFTP AVNGKPALLTHDEVTTLFHEFGHGLHHLLTRVEHAAASGINGVAWDAVELPSQFMENW CWEPEGLALISAHYETGVALPQDLLEKMLAAKNFQSGMMMVRQLEFSLFDFELHATHG DGRSVLQVLEGIRDEVAVMRPPAYNRFANSFAHIFAGGYAAGYYSYKWAEVLSADAFS RFEEEGVFNPDTGRAFREAILARGGSREPMLLFVDFRGREPSIDALLRHSGLVGEAA* " /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; " gene 80752..81027 /locus_tag="PA0068" CDS 80752..81027 /db_xref="GI:15595266" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248758" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSPAITRKRFIAGAVCPACSEQDKIQMWEEDGVPHRECVACGYA DTLNAQGQSIPKELGTRVNQNAPKPANPKVQSVQFFPNPKLKKKPDA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 81116..82174 /locus_tag="PA0069" CDS 81116..82174 /db_xref="GI:15595267" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248759" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEV REEIARTVISRNQSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWDLSPGIDFETRLI AKSNVASALEQELSKPGYRCAPINLGANTDPYQPLERERRLTRQVLEVLLRFRHPLTI VTKGSLILRDLDLLRELAEQNLVAVMISLTTLDDELKRILEPRAAAPSARLRAIRTLS GNGIPVGVLCSPMIPMVNDMELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAA HYPQRAEHVMSLVRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREG FGLDCSRFAVPGAQMALF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." CDS complement(82404..83318) /function="Membrane proteins; Protein secretion/export apparatus" /product_synonym="102874" /protein_id="NP_248760" /db_xref="GI:15595268" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Unknown, Class 3 (primary)" /product="TagQ1" /translation="MSQPSENRLITSARYALCLLTASGVLLSGCASSGVGSVAQTTRA EYYPSCYEPVSHLRSTDNAVRNSAITGAITGGLLGGLAGGLASDENRGRNAALAAAGG ALAGGAAGYYMEKQKQISDDRARIGSYGTDVDRSTVEINRSVAYAKSAQSCYQSQFKA LLDGRKNKSINEAEGRKRLAEIVSGLQETNALLVAANGRAGENISNYTQAYEKDLQQV GVPRAEVTKVAEAENRASTTKGGSKPKTGSNPKVPKEAVATEQTIRKAQDAQSEGNKV ASQGQGMIREVCNSPDMGDWAPPSCAKA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(82404..83318) /locus_tag="PA0070" /gene_synonym="102873" /name="tagQ1" CDS complement(83380..85092) /function="Protein secretion/export apparatus" /product_synonym="102876" /protein_id="NP_248761" /db_xref="GI:15595269" /localization_and_confidence="Periplasmic, Class 1 (primary); Unknown, Class 3 (primary)" /product="TagR1" /translation="MFEKAILPLALGACLAFAAPAWAEGDSPDNPKPLADDVALPLPC GGEMVFRHVYVLAEGALDDREVNLGYAFNEGEAGYQQSFISGYRRDYVNGQFSLADLA PAWQQKLSASLPKPAAGTPLKPMLYFIGKYEVTARQYAAVMSQAAALSGQGEAPACDV PDGMAARLPKVNLSRFDAERFGAVYSAWLLKNHPELLPVSGRGKNPEDGGIGFVRLPT EVEWEFAARGGQAVSRQELEGRLFPRKVEGSDQEGPLGDWAVYNQVAGGTGQAARLLP VGMKRPNPLGLFDVIGNAAEMVQESFQLVHAGRRQGTYGGFVVKGGNYLEGEMTLFTG MRREYPLFAADGSEQRNETTGFRVAIGALSAPRSRYPELFAQWQKEGRLAALTDAIDD AQDPTKQLDGIIAATRDPQMQAQLAQINEELKRNVSLIARQREEAAGNLIQSAALVAE TINNYNIRLTNLKKDREKAVAARDQATAQLYAGAIANGRSALDGALAIYIDNLATGTR YTDAVIQAQFQRIQEELNRNPVLGKSLVKRATLFVKHVGDYRQQHRAEPEAVLKELLA SSGR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(83380..85092) /locus_tag="PA0071" /gene_synonym="102875" /name="tagR1" CDS complement(85085..86284) /function="Membrane proteins; Protein secretion/export apparatus" /product_synonym="102878" /protein_id="NP_248762" /db_xref="GI:15595270" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="TagS1" /translation="MRAGLLLSLAWADYRGEARLSLCAIFALAAVITPLLVLFGLKYG LVSTLTERLERAPSVREIIPVGGARYRAEDIAALAARADVAFAVPRTRQIAATADLSG GGETALSVEMIPSAAGDPLLAGLPQPDRPTRVVLSHGAAEKLGAQPGERIVARIGRRM DGQAQSQRLELEVLAVLPQERFARDALFAPLALLEAAEDYRDGRAVAAYGWPGKAGET PRARIYPGFRLYARDLDAVEGLRRHFVASGVEVATQAEAIAQVRSLSRNLGLVFWIVA ALAIGGAFAAIAASSLAAVERKRRALAVLRLLGFPTAALVGFVMLLALFSAVFGLFLA GLLYAATAGALNHLFDNQSGEFVCRLLPSHYLTALLATLLCSVLAAASGGWRAARIEA AEGLRDV*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(85085..86284) /locus_tag="PA0072" /gene_synonym="102877" /name="tagS1" CDS complement(86284..87003) /function="Transport of small molecules; Protein secretion/export apparatus" /product_synonym="102880" /protein_id="NP_248763" /note="GO_component: ATP-binding cassette (ABC) transporter complex [goid GO:0043190] [evidence IEA]; " /db_xref="GI:15595271" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="TagT1" /translation="MILRLHEVARSHGAGRQRYRLRVPALELRAGRQLAIVGPSGCGK STLLDLLALALAPDPGGRFEFLAGERPQDIAALWRDGRQDRLAALRRQHCGYVLQSGG LLEFLDVRRNIGLPCALLGAPSAERVQALAERLEIGDQLDKKPAALSVGQRQRVAIAR ALAHAPRLLLADEPTAALDPLNAERVMRLLVEQARERGACTVVATHDERLARAAGLEV LAIRWQREADDSVGACLEEVG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(86284..87003) /locus_tag="PA0073" /gene_synonym="102879" /name="tagT1" gene complement(87000..90098) /locus_tag="PA0074" /gene_synonym="tagE1" /name="ppkA" CDS complement(87000..90098) /function="Adaptation, Protection; Translation, post-translational modification, degradation; Protein secretion/export apparatus" /product_synonym="TagE1" /protein_id="NP_248764" /note="GO_process: cellular protein metabolic process [goid GO:0044267] [evidence IDA]; GO_process: response to stimulus [goid GO:0050896] [evidence IDA]; " /db_xref="GI:15595272" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic Membrane, Class 3 (primary)" /product="serine/threonine protein kinase PpkA" /translation="MDIELPGFDIERELGEGAMATVYLATQRSLQRKVALKVMAAALA ADPSFAERFLREGRTLARLSHPNTVTIHDIGNVGSCYYMAMEYLPNGTLKERIQQGLD PEQGLAYVRQVAAALGYAHSQGLVHRDVKPANILFRADGTAVLSDFGIAKSIEDNTQF TQVGFAVGTPSYMSPEQARGQEIDGRADLYALGVVLYEILTGKLPYNGKDSLSTALAH LTEPLPELPIEQGRYQDILRQLLAKDPAERFPTAGALIAALDRLAPSALEATQIRPLA TPQGSPRASNPPPAEPAPLPPADLGGLQPVSIQLPPVTPSAGGATPPPPPPSQAAKPP SPPPPPLPPAKPRAGGSRTPLIAAAAAAVLLAIGGGAWWLLGSGDAPSAADPAPLGQT PADKPQQQTPVADAEQDGGERPLLMPGKKTLFQRVLTKPGAAISAEAGGPPRAGAVPA FSVLYVYARKQVGGSPWLRVGASSNGEGDGWLPASAVSDWKQSLVLKFTERSGRAPVM FLNSAEQVERLLGDTRAARDTLTQAVDHKGDPQVVAVEPNDRAIPQDQFYLLPIFDSK ESFDADGQPAQLLEVASIDPGGSAAAPQAPGQAGQGGASGAASDTFRTGIVLVVDTSV SMQPYIDRVREVIDGLQRQIGERGDLDKVSFGLVGFRNNTDKTPGLEYVSKTLVPLQP GNDAQRFAELSSQVRATDVSSHSFNEDAFAGIMQAVDEMDWSPYAGRVVLLVTDAGAL RKNDPLGRTQMNEAEVRQAALRKGVKIYALHLRTPAGKNNHGYAEQQYRSLTADANPK IADLYIPVAGGEVNAFGNTVKEIGTVFADLVHDAGNRKPQAPRFDAAPSVASKSAAIG YAMQMEFLGRRDPVRAPQVVTAWTADRDLTNPALPAFQVCVLLSKLQLNELQQSLKLI VDAAKRTQTSPKDFFQEIASASAYMSRDPAQLVKGSNLAQSGVLGEYLEGLPYRSKSL NMTQDLWLSLSVAEQQDFIDELESKIRLYETFHNDVANWVRFGDADAGDALYRVPLST LP*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(90106..90834) /locus_tag="PA0075" /gene_synonym="tagG1" /name="pppA" CDS complement(90106..90834) /function="Putative enzymes; Protein secretion/export apparatus" /product_synonym="TagG1" /protein_id="NP_248765" /db_xref="GI:15595273" /localization_and_confidence="Unknown, Class 3 (primary)" /product="PppA" /translation="MVPNSVSYYRSASYSHVGMVRKVNEDASLDAPEAGLWVVADGMG GHAAGDFVSSLIVDTLRRIPAASSLPAYVGALRTGLAQVNERVRQEAGLRGVSVMGST LVLLAARGNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQELLDNALISEEEARHHPR ANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYAVV RSLVHLGLTRGAPDNITALVVRAF*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." CDS complement(90844..91524) /function="Protein secretion/export apparatus" /product_synonym="102886" /protein_id="NP_248766" /db_xref="GI:15595274" /localization_and_confidence="Unknown, Class 3 (primary)" /product="TagF1" /translation="LNSVGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDEL GAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVMPSIDRVGRYFPLTVACLLPANADLG GLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRS EAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGEGEVI PLFPGIPG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(90844..91524) /locus_tag="PA0076" /gene_synonym="102885" /name="tagF1" CDS complement(91521..94826) /function="Protein secretion/export apparatus" /product_synonym="102888" /protein_id="NP_248767" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595275" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic Membrane, Class 3 (primary)" /product="TssM1" /translation="MQSLAEVSAPDAASVATAEELATLKQRMDEALALLKRAKLGGSE RRNLYELPWYVIIGPPGSGKTTALMNSGLDFPLAAQMGAGAIRGVGGTRNCDWWFTDE AVLLDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQRKRRPIDGAFIAISLSDLLLGSDA ERAAHAQAIRARIQELYQQLGVRFPIYVMLTKFDLVPGFMEFFDSLNREERAQVWGMT FALDDGKSAEGPLAVFDSEFALLEQRLTARLVERLQQERDPARRDLVYGFPQQFAALR ECLGEFLNGVFKPNPYEERPLLRGLYFTSGTQEGSPIDRLIGSMAQSMNLDRQHLARQ TGTGRSYFIERLFREVAFGERGLVGTNPKVERRRKWLTIGALSATALVVLAVTAVWIA SYRANQSYIAAVDQRVDPLARGIESLSPAQRDVLAVLPQLNAVQNLAGDAPSWAEGYG LYQGDMLGEESASVYRKLLIAVFAPRLVTRIEEQLRSGGSSDFLYEGLKAYLMLGSPD HYDADFIKAWISLDWERNLPRDLSPEQRQALHAHLDALLERRPPSARLDQDLVEDLRR QLQQLPVAQRVYDRVKRQRLPKDVPDFRISDAAGRDAPLVFARKSGKPLTDPLSGFFT YRGYREVFLTASLSQAGTIAEEQWVLGRDLNDAGDAANLALDVRRLYFQDYLRQWDDL LADLTVVPITNVTQAADVLRILSGPTSPFRKLLEAVARETDLQKGDRLVAAQVKKAAD GTVDKLKQRLGSLVGQEEEGAREQPRQVDSDPISAHFAELNSLVSKGEGGNEPAPIDS LLEDMNALYVQVSAMAGASGDSLLGDAKNQVAAAASRVALSAERQPPVVQGLVKNVVN STTSSMMGSVRNQLNAAWISDVVSVYRQSLAGRYPIAAGSSRDATLEDFGHFFGAGGV MDSYFRQYLQPYVDTSASTWRWQPGAAQKLGINPGVLHTFQRAAAIRDAFFRSGGMQP TVRFELKPVTMDAAISQFILDLDGQQLTYDHGPSRPVAMQWPSANGLGVVRLTVTPPP SSGRSGLTLEGPWAWFRLLDQSDLERGNSPDRFTLRLRIDGSSIACELRASSAFNPFK SRVVSGFSLPERL*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(91521..94826) /locus_tag="PA0077" /gene_synonym="102887" /name="tssM1" CDS complement(95048..96397) /function="Protein secretion/export apparatus" /product_synonym="102890" /protein_id="NP_248768" /note="GO_process: interaction with host via secreted substance [goid GO:0052048] [evidence IEA]; " /db_xref="GI:15595276" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="TssL1" /translation="MPPIDDPFGTPAGGGNGSPPDDRTMIMPRPGGRAPEPAGGPRGG DPYTPPPMASLAPLSGRGDGLNPLEQAAGPLLAMLTRLRNTIAHPAPASLRAQLLGYL RQFEEKARQAGVAPDEVMLARYVLCTALDEAVLSTPWGSTSDWGKQSLLITLHNEAWG GEKVFQLLEHCLQNPHQRLHLLELLYLCTSLGFEGRYRVMHDGRSQLEALRERTAAVI RSTRGEYEHELSPHWRGLSVMRDRLSQYLPPWVGIAIGLALLLALLFGLRMKLAADAE PVFKRIHAIGEIPVQAIDRPAVQPRVIERPRLARFLADDIKAQRVAVEDAVDRSVVTI RGDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNRPIATLRYPSNWKLS QARAQEVADLLGATTGDAGRFTAEGRSDTEPVATNASAEGRARNRRVEITVFAEGAQ* " /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(95048..96397) /locus_tag="PA0078" /gene_synonym="102889" /name="tssL1" CDS complement(96404..97738) /function="Protein secretion/export apparatus" /product_synonym="102892" /protein_id="NP_248769" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595277" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="TssK1" /translation="MSWNNRVVWSEGMFLRPQHFQQHDRYLETLVDGRCRSLLAGGWG FSELKLDDALLTQGKLAIVSARGVLPDGTPFNIPADDPAPAPLNVEESLRDGIVYLGL PLKRVGTRDTVEEGEALGGARYVSQVQEVRDDNAAFESRAPVALGSQAFRLLTERDGL GEYAAVGVARVREKRADQALSLDEDYLPPVLDIAAAPPLASFAKELLGLLHQRGEALA GRVVASSAGGASEIADFLLLQLVNRAEALTGHLSRVRPLHPQELYRELVALAGEFCTF TASQRRPEEYPVYNHDDLAASFAPVMLALRQALATVIDAKAIAIPIVEKAYGVHVAML SDRSLIDNASFVLVVRADVPGESLRGHFPQQAKVGSVEHIRDLVNLQLPGIGLLPMPV APRQIPYHAGSTYFELDRGSAHWKQLTHSGGFAFHIAGQFPGLNLAFWAIRG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(96404..97738) /locus_tag="PA0079" /gene_synonym="102891" /name="tssK1" CDS complement(97754..98218) /function="Protein secretion/export apparatus" /product_synonym="102894" /protein_id="NP_248770" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595278" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic Membrane, Class 3 (primary)" /product="TssJ1" /translation="MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAG QAAPLRLRLYELKKDTAFGRADYFALTDNAQSTLGGDLVEQDEFLLRPGEERRIERTL DEQTRQLGFVAAYRDLDRATWRQVLDVPGQRTSHLDITLGAQAIGIVARPAP*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(97754..98218) /locus_tag="PA0080" /gene_synonym="102893" /name="tssJ1" gene complement(98263..99756) /locus_tag="PA0081" /name="fha1" CDS complement(98263..99756) /db_xref="GI:15595279" /function="Protein secretion/export apparatus" /protein_id="NP_248771" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="Fha1" /translation="MPLRLTITSYHKLTPGQCSEKVLDQGQLTIGRGPDNDWVLPDPE RLVSSRHCTILNRDGVYYLTDTSTNGVLLVNAGHRLRRGNSEPLQDGETVRLGEYDIL VQLGHDIALPGSGNPQTDPFTSFDALMSRQAAGSAPAFAEPAPTPHPAVTAHFQGGSP LDTKPDLFDFLTPPPPGAAPRPDHVPAEQHDFRPPEPVIPPPPATTPAPPPAGGAPLI PADWDPFAELLGNTPAPSATPVAQPLPTAEPTPLAMPFADPGITQQPQPQPQPQPQPQ PQPQPQPQPASVAAPTPPASAAASAGGDLLQAFLRGAGMTQLKVDPAGAEAQMEAIGR SYRGLVEGLVDVLRARASLKGEFRMAQTMIQPVQNNPLKFAPNVDEAMLLLLRRDNQA FMAPDRAVADSFEDLKAHQLAVMAGVQAAIRHLLARFEPAALEARFGKPAGLSGLLPG ARQAQNWDSFTELYAKILREAEDDFQELFGREFSRAYEEHSARLRRS*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " CDS 100124..101158 /function="Protein secretion/export apparatus" /product_synonym="102898" /protein_id="NP_248772" /db_xref="GI:15595280" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="TssA1" /translation="VLDVPVLLAAVSPDSPCGDDLEYDAAFLELERIAQGQPERQMGD AVLPAEPPEWPRVRALASELFGRSKDLRVANLLLQSNVALDGLDGLADGLLLVRELLG QYWDGVYPLLDADDDNDPTFRINALTGLVAEPLLQLVWAIPLVRSRAFGPVNLRAALN AAGLQRFASETLSPEQIAGAFADADADALAATRRALDGAQEHALAIESGVAERVGSAQ GLDLGPLRQLLRQALQVFDLYGPQGAGESLAPGAEAVADEQVGAAPVAAVAAPAPRAS GEIANREDVLRQLDRLLEYYVRHEPSSPVPVLLKRAKTLVTADFAEIVRNLIPDGISQ FETLRGPESE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 100124..101158 /locus_tag="PA0082" /gene_synonym="102897" /name="tssA1" CDS 101247..101765 /function="Protein secretion/export apparatus" /product_synonym="102900" /protein_id="NP_248773" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595281" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="TssB1" /translation="MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMA DLAGKPAEPQAAVADRKFLEIDVDNFDARLKAMKPRVAFNVPNVLTGEGNLSLDITFE SMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALA SAPKPKDDEPQA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 101247..101765 /locus_tag="PA0083" /gene_synonym="102899" /name="tssB1" CDS 101778..103274 /function="Protein secretion/export apparatus" /product_synonym="102902" /protein_id="NP_248774" /note="GO_component: type VI protein secretion system complex [goid GO:0033104] [evidence IEA]; " /db_xref="GI:15595282" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="TssC1" /translation="MAELSTENLAQGQTTTEQTSEFASLLLQEFKPKTERAREAVETA VRTLAEHALEQTSLISNDAIKSIESIIAALDAKLTAQVNLIMHHADFQQLESAWRGLH YLVNNTETDEQLKIRVLNISKPELHKTLKKFKGTTWDQSPIFKKLYEEEYGQFGGEPY GCLVGDYYFDQSPPDVELLGEMAKISAAMHAPFISAASPTVMGMGSWQELSNPRDLTK IFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEEFAFEEETDGADSSK YAWANSAYAMAVNINRSFKLYGWCSRIRGVESGGEVQGLPAHTFPTDDGGVDMKCPTE IAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLP YLFATCRFAHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPL AAAEVVVEEVEGNPGYYNSKFFLRPHYQLEGLTVSLRLVSKLPSAKEA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 101778..103274 /locus_tag="PA0084" /gene_synonym="102901" /name="tssC1" gene 103350..103838 /locus_tag="PA0085" /name="hcp1" CDS 103350..103838 /db_xref="GI:15595283" /function="Secreted Factors (toxins, enzymes, alginate)" /protein_id="NP_248775" /localization_and_confidence="Periplasmic, Class 1 (primary); Extracellular, Class 1 (primary); Extracellular, Class 3 (primary)" /product="Hcp1" /translation="MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQSGSMHMGG GGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITL KEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNV QA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: interaction with host via secreted substance [goid GO:0052048] [evidence IEA]; " CDS 104006..104851 /function="Protein secretion/export apparatus" /product_synonym="102906" /protein_id="NP_248776" /db_xref="GI:15595284" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="TagJ1" /translation="MADPSFASGRLGSRLQGSIAMIAEELLRAGRLDDALKALQEQVR SQPSNATLRIFLFQLLAVMGQWARAQNQLKVVGELDASALPMVQTYSTAIDCEALRRE VFAGRLTPVILGQPAEWIAPLLQALSLDAEGHGEAAQALREQAFDAAPAVPGRIGEAP FAWLADADTRLGPVLEVIVNGRYAWLPMSNLRSLKVEAPSDLRDLVWLPAELTLANGG ATVALLPARYAETVEHGDDAARLGRKTEWLDSGLPVGQRLFVTDAGETALFDLRELDF EPTDA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 104006..104851 /locus_tag="PA0086" /gene_synonym="102905" /name="tagJ1" CDS 104853..105362 /function="Protein secretion/export apparatus" /product_synonym="102908" /protein_id="NP_248777" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595285" /localization_and_confidence="Unknown, Class 3 (primary)" /product="TssE1" /translation="MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASV LRDLAWLFNTTSLFDHGPAARMPAGNSVLNYGLPALAGHTASSVDVHAIEALLTETIA TFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVR VAQGERRRT*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 104853..105362 /locus_tag="PA0087" /gene_synonym="102907" /name="tssE1" CDS 105359..107218 /function="Protein secretion/export apparatus" /product_synonym="102910" /protein_id="NP_248778" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595286" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="TssF1" /translation="MNPRLLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADP YVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEG ALSSGFSIERGASLRGQLGPDDQTACEYRTAHPVTLWPLEVAQADYFGNPAAVLGRLA ASEPRAKAGLRIRLRSGAGIPFDSLSLDALPLYLHGADEQPYRLYEQLLGNACAVFVR APDNAWVERLPTSSLRARGFDDEDALLPVVPRAFQGYRLLQEYFALPARFLFVEFSGL NRALRRCHGEELELVVLFGKHDQRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRV NEHHVIVDRTRPLDFEVHSLQQVSGHGSGPEQPFQPFYAVRDPARYGREQAYFRVRRE PRVLSSKQRRKGPRSTYVGSETFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPI GAHKSDFTLEDSAPVMQVRCLAGPSRPRASRAHDASAWRLISQLSLNYLSLAERGQGA AALRELLRLYGDSGDPALQLQIEGLREVSSKPCTRRLPMPGPIVFGRGLEITLDFDEN AFRGTGVFLLGAVFERFLARYVSINSFTETVLRTGERGEVMRWQAKPGSRPNL*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 105359..107218 /locus_tag="PA0088" /gene_synonym="102909" /name="tssF1" CDS 107182..108228 /function="Protein secretion/export apparatus" /product_synonym="102912" /protein_id="NP_248779" /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " /db_xref="GI:15595287" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="TssG1" /translation="MAGEAGQPSEPLNLLAGMAAAPWDYDFFQALRRIECESPQLPRL GHSVRLADDPLRLGQKPDCTFAPSTLASVSQAGTAAVPRLDQFFFGLTGPNGPLPLHL TEYARERQRNVNDATFKRFMDVFHHRLLTLFYRAWAEARPEISHDRIDDDYWSARLAA LSGRGMPSLRGREPLADTARYYYTGHLAAQTRYPDGLRVILAEYFEVPVAVEEYVGQW LELPERSRLGVDSTSLGMDVCLGTHVWDRQHKFRLRLGPLDLDQYQRFLPDGDHFVEL AAWVAEYLGEELDWDVNLVLQRHEVPPLGLQGGGRLGFNTWLGDPGQDARDLLLARQY ATARPHEHKEKEHE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 107182..108228 /locus_tag="PA0089" /gene_synonym="102911" /name="tssG1" gene 108221..110929 /locus_tag="PA0090" /name="clpV1" CDS 108221..110929 /db_xref="GI:15595288" /function="Translation, post-translational modification, degradation; Chaperones & heat shock proteins; Protein secretion/export apparatus" /protein_id="NP_248780" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="ClpV1" /translation="MSEISRVALFGKLNSLAYKAIEAATVFCKLRGNPYVELVHWFHQ ILQLPDSDLHQIVRQSGIDPARLAKDLTEALDRLPRGSTSITDLSSHVEEAVERGWVY GSLMFGESQVRTGYLVIGILKTPSLRHALTGLSAEFAKLKVEALTERFDEYVGASPEN GLSASDGFNAGAAPGEASGALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDEEI RQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDVPPALKDVELRALDVGLL QAGASMKGEFEQRLRQVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAANLLKPAL ARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHH QVQILDEALEAAVRLSHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDSRRRI EALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRLVDELLET RARLRAAAEAVDAGGVPLGEGEVRLDEEQRQALHARLAELQAQLSALQGEEPLILPTV DYQAVASVVADWTGIPVGRMARNEIETVLNLDRHLKKRIIGQDHALEMIAKRIQTSRA GLDNPSKPIGVFMLAGTSGVGKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLK GAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGR VIDFKNTLILLTTNAGTEMIASLCADPELMPEPEAIAKSLREPLLKIFPPALLGRLVT IPYYPLSDDMLKAISRLQLGRIKKRVEATHKVPFEFDEGVVDLIVSRCTETESGGRMI DAILTNTLLPDMSREFLTRMLEGKPLAGVRISSRDNQFHYDFAEAE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_function: ATPase activity, coupled [goid GO:0042623] [evidence IEA]; " gene 110976..112907 /locus_tag="PA0091" /name="vgrG1" CDS 110976..112907 /db_xref="GI:15595289" /function="Protein secretion/export apparatus" /protein_id="NP_248781" /localization_and_confidence="Extracellular, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="VgrG1" /translation="MQLTRLVQVDCPLGPDVLLLQRMEGREELGRLFAYELHLVSENP NLPLEQLLGKPMSLSLELPGGSRRFFHGIVARCSQVAGHGQFAGYQATLRPWPWLLTR TSDCRIFQNQSVPEIIKQVFRNLGFSDFEDALTRPYREWEYCVQYRETSFDFISRLME QEGIYYWFRHEQKRHILVLSDAYGAHRSPGGYASVPYYPPTLGHRERDHFFDWQMARE VQPGSLTLNDYDFQRPGARLEVRSNIARPHAAADYPLYDYPGEYVQSQDGEQYARNRI EAIQAQHERVRLRGVVRGIGAGHLFRLSGYPRDDQNREYLVVGAEYRVVQELYETGSG GAGSQFESELDCIDASQSFRLLPQTPVPVVRGPQTAVVVGPKGEEIWTDQYGRVKVHF HWDRHDQSNENSSCWIRVSQAWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVY NAEQTVPYELPANATQSGMKSRSSKGGTPANFNEIRMEDKKGAEQLYIHAERNQDNLV ENDASLSVGHDRNKSIGHDELARIGNNRTRAVKLNDTLLVGGAKSDSVTGTYLIEAGA QIRLVCGKSVVEFNADGTINISGSAFNLYASGNGNIDTGGRLDLNSGGASEVDAKGKG VQGTIDGQVQAMFPPPAKG*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " gene complement(113022..113306) /locus_tag="PA0092" CDS complement(113022..113306) /db_xref="GI:15595290" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248782" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MTPIEYIDRALALVVDRLARYPGYEVLLSAEKQLQYIRSVLLDR SLDRSALHRLTLGSIAVKEFDETDPELSRALKDAYYVGIRTGRGLKVDLP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(113303..114595) /locus_tag="PA0093" CDS complement(113303..114595) /db_xref="GI:15595291" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248783" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MDAQAAARLGDEIAHGFGVAAMVAGAVAGALIGAAVVAATAATG GLAAVILAGSIAAGGLSMFQIVKGLTTIFELPEPTTGVLIRGSFNVYVNSRNAMRAGD DVSATCSGLPLNHPLWPFPVLIAEGSATVYINGKPAARLQSKMVCGAHIKTGSQNTFI GGPTERVAFVLDLEEWLHTGLEALGLAALAGGLLLAAMAGVAALVGVVAIGGLMMGGM ALLGDLGDRLGPGYRDLFQGVAGMALLGFGPKLAGRRPAAVTSETAQRRAYLNNKFGR SGNLDHDINYRGNRETAAKFFKSKDIDPADAESYMNGLDFNHPVRVETLAPGKNLWQY QSPGAPQGNWYTLSPRVQPTELGINPMGTNRAANTIEPKVLNSYRTTQKVEVLRSTAA PTDDFWSVKGQSYPAKGGAQQLFSNEKGSFGLLPREGS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(114611..115045) /locus_tag="PA0094" CDS complement(114611..115045) /db_xref="GI:15595292" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248784" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VTLYRLHEADLEIPDAWQDQSINIFKLPASGPAREASFVISRDA SQGDAPFADYVARQLENAEKQLPGFKLHKRWDINIHGHAAVLLDYQWQREGRDLMLRQ VFIERRPAVLITTLTTTPADLPHHEPAWKQAMQTLVPRPTPS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 115299..117524 /locus_tag="PA0095" /gene_synonym="vgr" CDS 115299..117524 /db_xref="GI:15595293" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248785" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MALAQQTRLVRVDSPLGAEVLQLQRMEGREELGRPFAYELELIS ENPDLPLDGLLGKPASLALELHDGSRRHFHGIVAACSQGSGNGQFASYQVTLRPWLWL LTRTSDCRIFQNQKVPDIIKQVFRDLGFSDFEDALSRSYREWEYCVQYRETSFDFVSR LMEQEGIYYWFRHEQSRHILVLSDAYGAHQSPPNYASVPYYPPTLEQRERDHFYDWHM AREVQSGSLSLNDYDFQRPGARLEVRSNIARSHAAADYPLYDYPGEYVQSQDGEQYAR TRIEALQARYERVRLRGRARGLGSGHLFKLSGYPREDQNREYLVVGAEYRVVQELYET GGGGVGAQFESELDCIDAGQAYRPLPTTPLPIVRGPQTAVVVGPKGEEIWTDQYGRVK VHFHWDRHDQSNENSSCWIRVSQAWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITG RVYNAEQTVPYELPANATQSGMKSRSSKGGTPANFNEIRMEDKKGAEQLFIHAEKNQD IEVENDETHWVGHDRTKTIDHDETVHVKHDRTETVDNNETITIGVDRTEKVGNNEKIS IGANRTEDVGSNETISIGVDRTEKVGSNEKISIGANRTEDVGNDETISIGANRSESVG NNETISIGADRSESVGANETIDIGGNQSTSIGKNESRSVGQGRDTSVGKDDSLDVGKS FTLNAGDSITLVTGAASIRMKKDGSIVISGKNITIDGSGAINVKADKNVVVKGRKILQ N*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 117552..118001 /locus_tag="PA0096" CDS 117552..118001 /db_xref="GI:15595294" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248786" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSVEIHLPGATTALPARLDGVVIGVLLDVPDAAAPVVAYPGCPS EHGLAAATTTQLSRADIGAQVALMFVAGDPRQPLLIGRIQRLPQEALAQLDGERLEFS AEREIVLRCGKASITLTRAGKVIIRGAYLSSRSTGVNRIKGGSVQIN*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 117931..119130 /locus_tag="PA0097" CDS 117931..119130 /db_xref="GI:15595295" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248787" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="VAPIFPAAPPGSTGSRAVRCRSTERGGPDMELLNATPLAAAYNQ GLDAEGRESLVVIAKGSFDLPLDGREARLLDEQQTLLMVDEFYGEPGFSAPRRECEFV PFKPFCDVLVLGSAQAPGGRPVQQLTAGIRVGRVSKALTVHGPRQWEPGLLGAGAGVA QPFQSQDISYASAFGGSHASPDNPGFMDCYMANPAGCGWFPRSADTAEIVGTPMPATE KLGEPVDSPHGRFTPMALGPLGRHWQARVGFAGRYDDAWLAERFPFLPADFDERYFQS APADQWTDHLRGGEEVLLLNLTGEERAAFRVPRREVPVTFFLKKGGHETAQARIDTLL VDCDARRVEVTWRIRRPLKRNLFEIAQVLVGSKSAAWWRARELGKDYYPSLAALARSR QAEEDEA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 119127..120164 /locus_tag="PA0098" CDS 119127..120164 /db_xref="GI:15595296" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248788" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSQALSIVASGMVSAVGLSAPASCAAIRCALDNFQETRFIDQGG EWLLAASVPLEQPWRGRAKLLKMAARAIDEALRGQPDLDCTELPLLLCVAEGDRPGRC AGLDESFLRDLEGELGRRFHPSSALIARGRVGGAVALLNARKLIQGGCRQVLVAGVDS FVSGPTLAAYEARERLLTSQNSNGFIPGEGAAAVLVAAPLHEEAPQLLCIGLGFGVEK ATVESEDLPLRADGLSQAVRAALAEAGCGLEQMDYRLTDISGEQYYFKEASLTLSRNL RVLKPKFDLWHPADCIGECGAAIGPALLAVALAASRKGYGDGPNVFCHLGNDAGERAA ALLSYRRVRAA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 120164..121324 /locus_tag="PA0099" CDS 120164..121324 /db_xref="GI:15595297" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248789" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MANEVYANNMEISCKAANGKSIAAFPDVCFTPPQAPPTPLGVPI PYPNTGLSKDTTKGTRTIRITRKEVMLKNKSYYKTSYGDEPGRAPKKGIVTSKIKGKV YFTSWSMNVKFESKNVVRHLDLTTHNHASFPGNTPVWPYLDQATVDAGGGPCSNEVKK EKKDCADFKPHGSKDACAGLGAGKPSGKKTSNEADRLADKVAARKCLTARRCALQPYK PNSCCPQQTAHHLIEASALHDKGRGGKGSVPLKGISNYSENKAPCVCAEGVNQNVGTH GLMHTFQSAAAAKSRSGTLQLSNGSSISAKKTTYGTAKRQSMAAMGKVFPQSKCSKEC LSAQLDNYHKQCGINARTPIKAVETGQTDVTAATQAIKTRNARLGATRSRVR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 121346..122266 /locus_tag="PA0100" CDS 121346..122266 /db_xref="GI:15595298" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248790" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MLKKLSPIFSNITGVVRYQDLAYVASVSDEIQEQNIAHSYVTEW DCGTWCVAGEDDDMLPWEIVSATVVHEPVEQALFLGARGQVFCMGSGDIHEEQLPDGD DAIGGRGNMRGVACIDGVAYACGMDRQVYRRFDENDWRAIDTGARPPAGSEAVVGFEA IGGFGAREIYAVGWDGEIWQYDGKRWQPRESPTNLILTAICCAEDGSVYACGQAGTLL RGRNDHWEIIAQDDVDEDLWSLAWFDGALYVSSATAVYTLVGGHLKEVDFGDEQPQRC FHLSAADGVLWSIAAKDIFSFDGQQWTRID*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 122248..123495 /locus_tag="PA0101" CDS 122248..123495 /db_xref="GI:15595299" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248791" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MDAHRLSIAAIVDQHAEEAAFLALLRDYAVRAPHYDLEELAELD QRIEAHLDGLAIAGQAGHDALLEQLDAHAQGEAFALAVLAMQAGDDALIGRMRACLAA SPEARRGFAAALGWLDWDQARPWVERLLASPEPLFRAIGLAACGMHRHDPGPALLSAL GHADPAVLARAARTAGELRRRDLMANIRAYRAHDDPSLRFWANWATAQMGDEEALGPL RAFAGQPGPFQLPATMVLLAWQPRDTSMAWIRQLMQAADTRRIGIQATGLFGDPVAVP WLIQQMRDESLARVAGEAFSLITGADLALLDLELEALPDYDPGPNDDLDDDNVALDDD ENLSWPEAERVSAWWRDNGARFVAGRAYLLGEPLGEARCRQVLRDGQQRQRMAAACLL ARFVPNLPLFPTGAPVRRQLDLF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: biological_process [goid GO:0008150] [evidence IEA]; " gene 123871..124599 /locus_tag="PA0102" CDS 123871..124599 /db_xref="GI:15595300" /function="Central intermediary metabolism" /protein_id="NP_248792" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable carbonic anhydrase" /translation="MPDRMRGVKSDSPEQESADDALKRIVDGFQHFRREVFPEQQALF KKLANSQRPRAMFITCADSRIVPELITQSSPGDLFVTRNVGNVVPPYGQMNGGVSTAI EYAVLALGVHHIIVCGHSDCGAMRAVLDPQTLERMPTVKAWLRHAEVARTVVADNCDC GASHDTLGVLTEENVVAQLDHLRTHPSVASRLASGQLFIHGWVYDIESAQIRAYDAKQ GRFLPLDGEHPVPMATPAPRYLSS*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 124810..126381 /locus_tag="PA0103" CDS 124810..126381 /db_xref="GI:15595301" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248793" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable sulfate transporter" /translation="MHVSKVFPSLRDTLPRDLMASVVVFLVALPLCMGIAIASGMPPA KGLLTGIVGGLVVGFLAGSPLQVSGPAAGLAVLVFELVRTYGVAMLGPILLLAGAIQL LAGRLRLGCWFRVTSPAVVYGMLAGIGILIVLSQLHVMLDLAPKASGLDNLLAFPQAA FAALGSLGMDSGLDAALLGLGTIAVMWGWDKLRPQRLRFLPGALLGVSLATLASLWLA LDVRRVEVPANLGEAIVWLRPADLLALADPSLLLAAVVVAFIASAETLLSAAAVDRLH DGPRSDMDRELSAQGVGNMLCGLLGALPMTGVIVRSSANVNAGARTRASAIFHGLWLL AFVLLLGSLLRQIPVASLAGVLVYTGVKLVDFKALGNLSRYGRMPMLVYAATALAIVF TDLLTGVLVGFALTLLKLVLKAARLKIALRYTGEHEAELRLSGAATFLKVPALSRVLD EVKPGTTLHVPMDNLSYVDHACMELLEDWGRMAPVQGSRLVIEPRALKRRLEGRLRGS VGLGGARNGGAVSPG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: membrane [goid GO:0016020] [evidence IEA]; " gene 126518..127114 /locus_tag="PA0104" CDS 126518..127114 /db_xref="GI:15595302" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248794" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MVDGFVQPVGEGLADQLVGHQVGYGGVQWDQCLAEVGDVAVVHF FHQAVRQVGFVEQGVEAVVAGEQRRRGEEELLGDLQHRLDPFLDAGFAGHAVGGVEQV RYLFDVGVDEAGEYVFRVLALRLDGAMQVGQAAGYQISQVTVAGFAEVRLLDEFTEGS GVHGVSHTTGMVKKRRNIAGGARRLRRDCHNRFVVMRG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 127378..128502 /locus_tag="PA0105" /gene_synonym="coII" /name="coxB" CDS 127378..128502 /db_xref="GI:15595303" /function="Energy metabolism" /protein_id="NP_248795" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="cytochrome c oxidase, subunit II" /translation="MLRHPRVWMGFLLLSAISQANAAWTVNMAPGATEVSRSVFDLHM TIFWICVVIGVLVFGAMFWSMIVHRRSTGQQPAHFHESTTVEILWTVVPFVILVVMAV PATRTLIHIYDTSEPELDVQVTGYQWKWQYKYLGQDVEYFSNLATPQDQIHNRQAKDE HYLLEVDEPLVLPVGTKVRFLITSSDVIHSWWVPAFAVKRDAIPGFVNEAWTKVDEPG IYRGQCAELCGKDHGFMPIVVDVKPKAEFDQWLAKRKEEAAKVKELTSKEWTKEELVA RGDKVYHTICAACHQAEGQGMPPMFPALKGSKIVTGPKEHHLEVVFNGVPGTAMAAFG KQLNEVDLAAVITYERNAWGNDDGDMVTPKDVVAYKQKQQ*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_process: oxidation reduction [goid GO:0055114] [evidence IEA]; " gene 128512..130104 /locus_tag="PA0106" /gene_synonym="coI" /name="coxA" CDS 128512..130104 /db_xref="GI:15595304" /function="Energy metabolism" /protein_id="NP_248796" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="cytochrome c oxidase, subunit I" /translation="MSAVIDTPDHHAGDHHHGPAKGLMRWVLTTNHKDIGTLYLWFSF MMFLLGGSMAMVIRAELFQPGLQIVEPAFFNQMTTMHGLIMVFGAVMPAFVGLANWMI PLMIGAPDMALPRMNNFSFWLLPAAFGLLVSTLFMPGGGPNFGWTFYAPLSTTFAPHS VTFFIFAIHLAGISSIMGAINVIATILNLRAPGMTLMKMPLFVWTWLITAFLLIAVMP VLAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVSAII PTFARKPLFGYTSMVYATASIAFLSFVVWAHHMFVVGIPVTGELFFMYATMLIAVPTG VKVFNWVTTMWEGSLTFETPMLFAVAFVILFTIGGFSGLMLAIAPADFQYHDTYFVVA HFHYVLVPGAIFGIFASAYYWLPKWTGHMYDETLGKLHFWMSFIGMNLAFFPMHFVGL AGMPRRIPDYNLQFADFNMVSSIGAFMFGTTQLLFLFIVIKCIRGGKPAPAKPWDGAE GLEWSIPSPAPYHTFSTPPEVK*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_process: oxidation reduction [goid GO:0055114] [evidence IEA]; " gene 130115..130669 /locus_tag="PA0107" CDS 130115..130669 /db_xref="GI:15595305" /function="Energy metabolism" /protein_id="NP_248797" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGING KTAGSAYSGEQQVDVGREVKVQFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARN PSDKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDV RHVTLAYTLFDITARKPPVPVAGR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 130680..131567 /locus_tag="PA0108" /name="coIII" CDS 130680..131567 /db_xref="GI:15595306" /function="Energy metabolism" /protein_id="NP_248798" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="cytochrome c oxidase, subunit III" /translation="MASHEHYYVPAQSKWPIIASIGLLVTVFGLGTWFNDLTAGHKES HGPWIFFVGGLIIAYMLFGWFGNVIRESRAGLYSAQMDRSFRWGMSWFIFSEVMFFAA FFGALFYVRHFAGPWLGGEGAKGVAHMLWPNFQYSWPLLQTPDPKLFPPPSAVIEPWK LPLINTILLVTSSFTVTFAHHALKKNKRGPLKAWLALTVLLGIAFLILQAEEYVHAYN ELGLTLGAGIYGSTFFMLTGFHGAHVTLGALILGIMLIRILRGHFDAEHHFGFEAASW YWHFVDVVWIGLFIFVYVI*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_function: catalase activity [goid GO:0004096] [evidence ISS]; GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_process: oxidation reduction [goid GO:0055114] [evidence IEA]; " gene complement(131583..131792) /locus_tag="PA0109" CDS complement(131583..131792) /db_xref="GI:15595307" /function="Membrane proteins" /protein_id="NP_248799" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MLKVAIVLLLLATLVSLFSGLFFLVKDQGHGSRVVNSLTVRVVL AAATLVLVAWGFYSGELNSHAPWHF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 131808..132602 /locus_tag="PA0110" CDS 131808..132602 /db_xref="GI:15595308" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248800" /localization_and_confidence="Outer Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MGGFMQYSQRLGEAGRNDRRSMRGAFRPGLLPTLVVLGLLPVLL WLGTWQLQRADEKRALLASYEARRGAEPVSPGQLEGLRDPAYVRVRLHGRFDERHTLL LDNRLRNGQAGVEVLQPFYDQASGLWLLVNRGWVAWTDRRSPPTLETPDRVLLLDAWT YLPPPGGLHLADAPAGGWPRLVTQLDIPALWQAFGRAGLPWEIRLEPGDASFDTDWPL VSMPPERHTGYAVQWFALATALLALYLYLGVRRAREKNHESRDSDA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 132577..133155 /locus_tag="PA0111" CDS 132577..133155 /db_xref="GI:15595309" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248801" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSLAIPMPERPRRARGRLQLLAIIGLVVGPMLLASAMYKWNFWV PQGRSYSGALIGNGQTPADLGVQGRSQGEQWQLLVTAPGTCGEDCQQLVYLARQINIA LGREASRAGHALAASGELPADFANLVRQDYPRLQRYGLDPALYDKAGGGERPLLWVVD PHGNLVLRYDAKANGKKLLKDVQLLLKLSHIG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 133220..134293 /locus_tag="PA0112" CDS 133220..134293 /db_xref="GI:15595310" /function="Membrane proteins" /protein_id="NP_248802" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MSGATRKPGFTVAVLATLLAAVVVLLGAYTRLTHAGLGCPDWPG CYGFVHVPLSEAQLAHAELHFPDAPVEAQKGWNEMIHRYFAGALGLLILGLALHALVR RGRDGQPLKLPLLLLAVVIAQAAFGMWTVTLKLWPQVVTAHLLGGFTTLALLFLLALR LSGRFAARRYPAATRGLAGLALLLVIGQIALGGWVSSNYAAVACIDLPTCHGEWWPRM DFANGFHLTQHIGPNYLGGQLDSDARTAIHMTHRIGALCVTLVLLLLAWRLQRSGLVW PTALMLLGLSLQIGLGISNVLLHLPLPVAVAHNGGGALLLLSLVLVNYRLRAPASVRA PAPSPQRVRRTLPPAQGSRLKAA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 134319..135233 /locus_tag="PA0113" CDS 134319..135233 /db_xref="GI:15595311" /function="Energy metabolism" /protein_id="NP_248803" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="probable cytochrome c oxidase assembly factor" /translation="MATVIDRHSQPTWRDFLELTKPKVVVLMLITSLIGMLLATKAPL DGFVPWQVLIFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPLAEGRVSPSMALG FALLLALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKRATPQNIVIGGLAGAAP PLLGWVAITGHLSAEPLLLVLIIFAWTPPHFWALCIHRKDEYAKADIPMLPVTHGERY TKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALALGARFLDWAWALYCDSRPHAAIK TFKYSIVYLFLLFMALLVDHYLPLKLLL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: protoheme IX farnesyltransferase activity [goid GO:0008495] [evidence IEA]; " gene 135259..135894 /locus_tag="PA0114" /name="senC" CDS 135259..135894 /db_xref="GI:15595312" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248804" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic Membrane, Class 3 (primary)" /product="SenC" /translation="MTRVNKTVLVLVALVALVLGLTVHKVLTAQRQADPTVLLDAGIV ILPQTRKVPALEFTNQDGQAVSTASLKGRWHLLFFGYTFCPDVCPTTLAQLRELQGKL PQEVRDDLQVVFVSVDPNRDTPQQIKQYLGYFNAGFQGLTGTPENIQKLANAMSIPYI PADTSKPNYTVDHSGNLVIIGPDGEQHGFIRAPLNNAKLEAQLPGVLKPQA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(135934..136386) /locus_tag="PA0115" /gene_synonym="elaA" CDS complement(135934..136386) /db_xref="GI:15595313" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248805" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKCPYQEVDGLD LVGDTHHLMAWRDGQLLAYLRLLDPVRHEGQVVIGRVVSSSAARGQGLGHQLMERALQ AAERLWLDTPVYLSAQAHLQAYYGRYGFVAVTEVYLEDDIPHIGMRRA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: ribosome biogenesis [goid GO:0042254] [evidence IEA]; " gene 136518..136991 /locus_tag="PA0116" CDS 136518..136991 /db_xref="GI:15595314" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248806" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MRWEELSEQPCSLARVLAILGDRWTLLVLRDCFLGVRRFDDFER SLGVTRHVLADRLKRLVEAEILAKVPYQERPLREEYRLTEKGMELYPAILSLVNWGDR HLAGVEGPPLEHVHKHCGQHMHGVLVCSECGEPLHARDVTVREGLFWKGRLLRRG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 137248..137976 /locus_tag="PA0117" CDS 137248..137976 /db_xref="GI:15595315" /function="Putative enzymes" /protein_id="NP_248807" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable short chain dehydrogenase" /translation="MTQRKAVLVMGAGDATGGAIARRFAREGYVACVARRNAEKLEPL VQAIRDQGGEALACGCDARQEQQVIDLFARIEGEVGALEAVIFNVGANVWFPITETTE RVYRKVWEMAAFGGFLTGREAARVMLPRQRGTIIFTGATASLRGRAHFAAFSGAKFAL RALAQSMARELGPKDIHVAHPIIDGAIDTDFIRETLPELYKRKEQDGILDPEHIAETY WQIHCQPRDCWVHELDLRPWMETF*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 138001..138588 /locus_tag="PA0118" CDS 138001..138588 /db_xref="GI:15595316" /function="Putative enzymes" /protein_id="NP_248808" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGV FKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGE GFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTE EAVRRGVFGAPSFFVGDQLFFGQDRLDFVAEVLAG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 138818..140167 /locus_tag="PA0119" CDS 138818..140167 /db_xref="GI:15595317" /function="Transport of small molecules" /protein_id="NP_248809" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="probable dicarboxylate transporter" /translation="METPAMFIKRCSRSIFLQVVIGLVIGVICGVGIPDLAVQMKPLG DGFIKLIKMLIALIVFCVVVNGISGAGDLKKVGRIGLKSVIYFEILTTIALVLGLVVA YSLGLGSGANIHLNELPAGDVALYTGRTQEIHGPVAFLMGLIPTSVFSAFAENDILQV LLFSVLFGSALNLVGEQASGVARLINEFSHIVFRIMGMIVRLAPLGVFGAVAFTTARY GVDSLSHLGALVLVFYATCLVFVMAVLGSVLRLSGVRMLPFLRYFREELLIVMGTASS DAVLPQVMRKLEHMGIRSSTVGLVIPTGYSFNLDGFSIYLTLAVVFIAHVTGTPLAMT DLITILLVSLVTSKGAHGIPGSALVILAATLTAVPAIPVAGLVLVLSVDWFMGIGRAL TNLIGNCVATVTIARWENDIDMPRAQAILDGRLEAPAKADGEPLKRSAVAGEGKLHG* " /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 140216..140902 /locus_tag="PA0120" CDS 140216..140902 /db_xref="GI:15595318" /function="Transcriptional regulators" /protein_id="NP_248810" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MFSSSKLVNAVAQRLLDTIEQGRWVAGQMLPGQRELAEQMEISR PSLREAIMVLETLGVVRSLPGKGVMVLERSEPLREVAAPGEATMEDVLQLRYALEPFI VGIVAQSAGAAEISELRLLLLDLREAVEDGDPQALVEAYTAFHRRLVKLTSNPIFLSV SEQIGSALERSDNLVRRQPEYAEEILQEHDAILRAIRQHDSERASQAMRQHILNEGAR LNIDLRLPQV*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 141003..141737 /locus_tag="PA0121" CDS 141003..141737 /db_xref="GI:15595319" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248811" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MVGFEARTQQGAALRPTSHFVYESIYTAILEKRLAPAAKLSKET LGQIFRVSNGTIQRALTRLAEDGAVVMPPKEVASVARPDERQARQVLDARLLVESEVV RQLPAGLDPAALAELRALVDEEQACLAARDSAGLIRLAGRFHLRLAELTENPLLQGFV RGLVARASLDIALNKGAVYTAEACAAQRALLDALEDGDSAAAAALMDAYLRGLFARMR FLPPPTTDLREAFGMKAPSGEKRRRA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." CDS 141917..142327 /db_xref="GI:15595320" /function="Adaptation, Protection" /protein_id="NP_248812" /localization_and_confidence="Extracellular, Class 3 (primary)" /product="rahU" /translation="MAYAEWIAVKVVVSKSIGTVGIRNATLQWGKFYRYTNKDDEIST EEVSSMNVQAGSPQWIASCGRENASSGTQGSFDCYDGNTKMGTFSWDDPWKSGATNTW SFTPASADYAGITSGGNATGTDIGEVTLTLGRFS*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 141917..142327 /locus_tag="PA0122" /name="rahU" gene complement(142359..143267) /locus_tag="PA0123" CDS complement(142359..143267) /db_xref="GI:15595321" /function="Transcriptional regulators" /protein_id="NP_248813" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="probable transcriptional regulator" /translation="MDSLKGMAIFATVVDKGSMAAAAQSLGMTPSAVSQQIRKLESRA QVTLLHRTTRRLTLTEAGEAFYRSCAQMLAIAEEAERRLGEWRDAPVGELRLAAPVGF SGTLITQALKPLLENHRQLRLQLFFQDERIDLVAERIDLAIRVGNLADSSLVARHLGD WSSVLCAAPAYLRQRAPINRPEQLTEVDWISLNTSNHLNHLTLSGPGGEVCKLRLEPR VAANGMLAVRQFTLDGLGVSYQPLPEVRDALNDGRLQQLLPEWRIPGLGIYAVTPRRE AQPAKVKVAIEALRRAFATDGDERWS*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(143567..143848) /locus_tag="PA0124" CDS complement(143567..143848) /db_xref="GI:15595322" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248814" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQ QVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKEIQILRIDRVEITP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(143845..144072) /locus_tag="PA0125" CDS complement(143845..144072) /db_xref="GI:15595323" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248815" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQ WQVAAIDEGLADANAGRLLEHIEIEKRWGLQ*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(144248..144868) /locus_tag="PA0126" CDS complement(144248..144868) /db_xref="GI:15595324" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248816" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MPTRVLRGLVAALPLFLAACSDSAPSSEEIARLLAERGFDKPAC ASSTLFKTFPVTLSDSFSGPGPAKGNAAVYDALVGVGLLRRDGDSYDLTPAGREDYKP ESKAFCYSSGFDVSVRSVDPAKPDDYGPAVEKGWLVTVEVKPREVKDWAKNPEVLKQA SLTTLQQITQPQVGQVSLVKPRGEEGYKLVNTRFSPRQGFHFNQAW*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 144969..145469 /locus_tag="PA0127" CDS 144969..145469 /db_xref="GI:15595325" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248817" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRLPANLGRLLPALCLGVLLSACSTFGQRDPLRIDLVGLEPLPG QGMEMRFMVKLRVQNPNDEPIEYNGIALDLDVNGQPLASGVSDQTGEVPRFGERVVSV PLTVSAFSAFRQAWGLSNNAPTQGMPYVVKGKLAGGLFGTVRFSEKGTLDFSGPAVGA PKTKGL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 145542..145883 /locus_tag="PA0128" /gene_synonym="phnA" CDS 145542..145883 /db_xref="GI:15595326" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248818" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="VSTLPPCPQCNSEYTYEDGALLVCPECAHEWSPNEAATASDDGK VIKDSVGNVLQDGDTITVIKDLKVKGSSLVVKVGTKVKNIRLVDGDHDIDCKIDGIGA MKLKSEFVRKV*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." CDS complement(145965..147392) /db_xref="GI:15595327" /function="Transport of small molecules; Carbon compound catabolism" /protein_id="NP_248819" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="Amino acid permease" /translation="MSKVVLASQLPNKRNASLAPGLKQRHVTMLSIAGVIGAGLFVGS GHAIAAAGPAALLAYLIAGTLVVLVMRMLGEMAVASPDTGSFSTYADRSIGRWAGFTI GWLYWWFWVLVIPLEAIAAAAILNAWFPAIDTWIFALAVTFLLTVTNLFSVARYGEFE FWFALLKVIAIIAFIVLGAVAIVGGLPEREVSGLSSLMASHGGFVPNGYGAVLGALLT TMFSFMGTEIVTIAAAESKDPAKQITRATNSVIWRIGLFYLVSIFIVISIVPWNDPLL IQVGSYQRALELLDIPHAKLIVDLVVLVAVASCLNSAIYTSSRMVFSLAKRGDAPSVL KLTNTAHVPRPAVLASTAVGFLTTIVNYFAPEKVFTFLLASSGAVALLVYLVIAVAQL RMRKQLQASGQPIEFRMWLYPWLTWAVILFIVAALSIMLIMPEHRHEVFATALLTIFT VCLGLLNARRKPRLGEDYAGKTARV*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: gamma-aminobutyric acid:hydrogen symporter activity [goid GO:0015495] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; GO_process: spermidine catabolic process [goid GO:0046203] [evidence IDA]; " gene complement(145965..147392) /locus_tag="PA0129" /name="bauD" CDS complement(147561..149054) /db_xref="GI:15595328" /function="Putative enzymes; Carbon compound catabolism" /protein_id="NP_248820" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="3-Oxopropanoate dehydrogenase" /translation="MGTLHHLINGEMVADNGRSADVFNPSTGEAIHKVPLADGKTLQK AIDAARAAFPAWRNTPPAKRAQVLYRFKQLLEQNEARISKLISEEHGKTLEDAAGELK RGIENVEYACAAPEILKGEYSRNVGPNIDAWSDFQPIGVVAGITPFNFPAMVPLWMYP LAIACGNTFILKPSERDPSSTLLIAELFHEAGLPKGVLNVVHGDKEAVDGLLQAPEVK AISFVGSTPIAEYIYAEGTKRGKRVQALGGAKNHAVLMPDADLDNAVSALMGAAYGSC GERCMAISVAVCVGDQVADALIAKLVPQIKALKIGAGTSCGLDMGPLVTAAAQAKVTG YIDSGVAQGAELVVDGRGYQVAGHENGFFLGGSLFDRVTPEMTIYKEEIFGPVLCVVR VNSLEEAMQLINDHEYGNGTCIFTRDGEAARLFCDEIEVGMVGVNVPLPVPVAYHSFG GWKRSLFGDLHAYGPDGVRFYTRRKAITQRWPQRASHEASQFAFPSL*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: valine catabolic process [goid GO:0006574] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; GO_process: spermidine catabolic process [goid GO:0046203] [evidence IDA]; " gene complement(147561..149054) /locus_tag="PA0130" /name="bauC" CDS complement(149138..149425) /db_xref="GI:15595329" /function="Carbon compound catabolism" /protein_id="NP_248821" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSGRPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHGHDYVVVP LTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; GO_process: spermidine catabolic process [goid GO:0046203] [evidence IDA]; " gene complement(149138..149425) /locus_tag="PA0131" /name="bauB" CDS complement(149425..150771) /function="Amino acid biosynthesis and metabolism; Carbon compound catabolism" /product_synonym="omega-amino acid--pyruvate transaminase" /protein_id="NP_248822" /note="GO_function: phosphoribosylglycinamide formyltransferase activity [goid GO:0004644] [evidence ISS]; GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; GO_process: spermidine catabolic process [goid GO:0046203] [evidence IDA]; " /db_xref="GI:15595330" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="Beta-alanine:pyruvate transaminase" /translation="MNQPLNVAPPVSSELNLRAHWMPFSANRNFQKDPRIIVAAEGSW LTDDKGRKVYDSLSGLWTCGAGHSRKEIQEAVARQLGTLDYSPGFQYGHPLSFQLAEK IAGLLPGELNHVFFTGSGSECADTSIKMARAYWRLKGQPQKTKLIGRARGYHGVNVAG TSLGGIGGNRKMFGQLMDVDHLPHTLQPGMAFTRGMAQTGGVELANELLKLIELHDAS NIAAVIVEPMSGSAGVLVPPVGYLQRLREICDQHNILLIFDEVITAFGRLGTYSGAEY FGVTPDLMNVAKQVTNGAVPMGAVIASSEIYDTFMNQALPEHAVEFSHGYTYSAHPVA CAAGLAALDILARDNLVQQSAELAPHFEKGLHGLQGAKNVIDIRNCGLAGAIQIAPRD GDPTVRPFEAGMKLWQQGFYVRFGGDTLQFGPTFNARPEELDRLFDAVGEALNGIA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(149425..150771) /locus_tag="PA0132" /gene_synonym="oapT" /name="bauA" CDS 150906..151823 /db_xref="GI:15595331" /function="Transcriptional regulators; Carbon compound catabolism" /protein_id="NP_248823" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="BauR" /translation="MAKSRNPSLGQVSDFDIRLLRIFKTIVECGSFSAAESTLGLSRS AISLHMGDLEKRLGMRLCQRGRAGFALTDEGREVYRATQTLLAALEGFRAEVNDLHQH LRGELNIGIINNLVTLPQMRITHALSALKGQGPQVRINIGMTTPNEIELGVLDGHLHV GVVPLISPLSGLEYLPLYDEHAQLYCSRGHALFERADGDIAVDEVLAADAVAPSYRLP AEAQARHQELNNSASASDREGMAFLILTGNFIGYLPSHYAADWVAAGMLRPLLPERFH YAIALTIVTRKGRRPNLVLERFLEAVAVS*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: positive regulation of transcription, DNA-dependent [goid GO:0045893] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; GO_process: spermidine catabolic process [goid GO:0046203] [evidence IDA]; " gene 150906..151823 /locus_tag="PA0133" /name="bauR" gene complement(151936..153306) /locus_tag="PA0134" /gene_synonym="gda2" CDS complement(151936..153306) /db_xref="GI:15595332" /function="Nucleotide biosynthesis and metabolism" /protein_id="NP_248824" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable guanine deaminase" /translation="MNDAVPAGNFVPPLILHSDHGGSAMSSSAHRGRILHFLGDPAKL GDKAWEYFEDGLLWIEHGHVRALDHATYLLPQLPADLPLEEHPQRLLLPGFVDCHVHY PQLGVIASYGTQLLDWLETHTFPAEQRFADAGYAAAQAELFLDELLRHGTTTALVFGT VHAVSAEAFFQAAQKRRLRMIAGKVLMDRNAPPALCDTAASGYAESRALIERWHGNGR LQYAVTPRFAPTSSPEQLAAAARLLDEYPGVYLHTHLSENLKEVAWVGELFPQAQDYL DVYHRAGLVGERSVFAHGIHLSERECRCLAHKNAALAHCPSSNLFIGSGLFDLGRAQQ YGIRVGIGSDVGGGTSLSLLANLADAYKIQQLRGTSLDPFQALYLATLGGARALDLDG LVGNFLPGREADFVALDLAATPMIAQRMEHARGLADTLFVLNTLGDDRAVAETWVMGE RRHVKG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: guanine deaminase activity [goid GO:0008892] [evidence IEA]; " gene 153696..153836 /locus_tag="PA0135" CDS 153696..153836 /db_xref="GI:15595333" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248825" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VECATTVHRETVDSGSTHGAAEHASVDRRGLSWKAGKPSIHGHH GV*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 154417..155988 /locus_tag="PA0136" CDS 154417..155988 /db_xref="GI:15595334" /function="Transport of small molecules" /protein_id="NP_248826" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="probable ATP-binding component of ABC transporter" /translation="MSAPSSFAPPRLELRGISKRYPGCLANDRIDLCIDAGEIHALLG ENGAGKSTLMKIIYGVTRPDAGEIRWQGEPVQVRDPARARALGIGMVFQHFSLFETLS VAENIALALGAEAGSPRRLEARIREVSQRYGMPLEPRRLVHGLSIGERQRVEIVRCLM QDIRLLILDEPTSVLTPREAEDLFVTLRRLAEEGCSVLFISHKLAEVRALCQRATVLR GGRVAGQCVPAQCSDLELARLMVGDAEGLAAEYPKVTGGAPFLQVRDLHWRNPDPFGV SFAGLDLEVRSGEILGIAGVAGNGQDELLALLSGEVRLPRAQAERIRLGGCAGAHLAP DARRRAGQAFVPAERLGHGAVPEMSLADNALLTAFQQGLVKRGLVRRRKVLALAEEII RRFAVKAPGAGAPARSLSGGNLQKFILGREILQAPRLLVAAHPTWGVDVGAAALIHRA LIALRDAGTAILVVSEDLDELFLLSDRIAALCSGRLCPAVATASASPQKVGGWMAGQF EAPAAVAGAVAQGSL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 155988..157085 /locus_tag="PA0137" CDS 155988..157085 /db_xref="GI:15595335" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248827" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MLLSLEPRGRQSRWMLLASPLLAGLLTLVCGALLFACLGHDPWQ TLHTVLVQPLSDLYGLGELLVKAMPILLCALGLALAYQARVWNIGAEGQLLVGALAGS AVAIQLLDWQSRWALAWVLLAGTAAGALWAGFAAWLRTRFNANEILTTIMLNYIALNL LLYGVHGPLKDPDGFNFPQSALFGEASRLPALFEDSRVHLGALFGLLALAAVWVLAQR SFLGFQVRVLGLDRRAAGFVGFREKRLVWFVLLFSGALAGLAGVCEVAGPIGQLVPQV SPGYGYAAITVAFLGRLNPFGILCASLLMALLYLGGEAAQMSLNLPLALSGLFQGMML FFLLACDVLILYRPRLHGRWRKRPALRDALA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 157108..158034 /locus_tag="PA0138" CDS 157108..158034 /db_xref="GI:15595336" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248828" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MDIDLLDNLLFAMVRTGTPLLLVALGELVCERSGVLNLGQEGMM LFGAVIGFMVAFSSGSLWLGVLLAVLAGMLLAALFAGVALYLNANQVACGLALTIFGV GLASFVGAAWVGKPLQGFAPLALPVLGELPLLGRMLFAQDALVYLSLALFAAVAWMLL RSRAGLVLQAVGENPDAASAMGLPVLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWAEN MTAGRGWIALALVVFASWRVLRVLLGAWLFGLASILHLVAQGVGLSIPANLLAMLPYA ATILVLVLLSRDALRTRLYAPVSLGQPWKAGH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 158199..158762 /locus_tag="PA0139" /name="ahpC" CDS 158199..158762 /db_xref="GI:15595337" /function="Adaptation, Protection" /protein_id="NP_248829" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic, Class 3 (primary)" /product="alkyl hydroperoxide reductase subunit C" /translation="MSLINTQVQPFKVNAFHNGKFIEVTEESLKGKWSVLIFMPAAFT FNCPTEIEDAANNYGEFQKAGAEVYIVTTDTHFSHKVWHETSPAVGKAQFPLIGDPTH QLTNAFGVHIPEEGLALRGTFVINPEGVIKTVEIHSNEIARDVGETVRKLKAAQYTAA HPGEVCPAKWKEGEKTLAPSLDLVGKI*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: response to stimulus [goid GO:0050896] [evidence ISS]; GO_function: alkyl hydroperoxide reductase activity [goid GO:0008785] [evidence RCA]; GO_function: peroxiredoxin activity [goid GO:0051920] [evidence IEA]; " gene 158907..160472 /locus_tag="PA0140" /name="ahpF" CDS 158907..160472 /db_xref="GI:15595338" /function="Adaptation, Protection" /protein_id="NP_248830" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="alkyl hydroperoxide reductase subunit F" /translation="MLDANLKTQLKAYLEKVSQPFEIVASLDDSDKSRELLGLLQDIV GLTDKITLKTDGSDARKPSFSLNRPGADIGLRFAGIPMGHEFTSLVLALLQVGGHPSK LDADVIEQVKGIEGTFEFETYFSLSCQNCPDVVQALNLMAVLNPNIRHVAIDGALFQD EVEARQIMSVPSIYLNGEVFGQGRMGVEEILAKIDTGAAARDAEKLTARDAFDVLVVG GGPAGAAAAIYAARKGIRTGVAAERFGGQVLDTMAIENFISVQETEGPKLARALEEHV RHYEVDIMNLQRASKLVPAKNAGELHEVRFESGGSLKAKTLILATGARWREMGVPGEQ EYKAKGVCFCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVAHVTLLEFDSKLRAD AVLQRKLYSLPNVEVITSALTSEVKGDGQKVTGLVYKDRNSEEFKSIELEGIFVQIGL LPNTEWLKGSVELSPRGEIIVDARGETSLPGIFAAGDVTTVPYKQIVIAVGEGAKASL SAFDHLIRTSAPE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: response to stimulus [goid GO:0050896] [evidence ISS]; GO_function: alkyl hydroperoxide reductase activity [goid GO:0008785] [evidence RCA]; GO_function: oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor [goid GO:0016668] [evidence IEA]; " gene complement(160552..161448) /locus_tag="PA0141" CDS complement(160552..161448) /db_xref="GI:15595339" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248831" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="VALQVASAPHGSSEDSTSASLPANYPYHTRMRRNEYEKAKHDLQ IELLKVQSWVKETGQRVVVLFEGRDAAGKGGTIKRFMEHLNPRGARIVALEKPSSQEQ GQWYFQRYIQHLPTAGEMVFFDRSWYNRAGVERVMGFCSPLQYLEFMRQAPELERMLT NSGILLFKYWFSVSREEQLRRFISRRDDPLKHWKLSPIDIKSLDKWDDYTAAKQAMFF HTDTADAPWTVIKSDDKKRARLNCIRHFLHSLDYPDKDRRIAHEPDPLLVGPASRVIE EDEKVYAEAAAAPGHANLDIPA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: polyphosphate kinase activity [goid GO:0008976] [evidence IEA]; " gene 161906..163255 /locus_tag="PA0142" CDS 161906..163255 /db_xref="GI:15595340" /function="Putative enzymes" /protein_id="NP_248832" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSRTWIRNPLAIFTANGLDAAGGLVVEDGRIVELLGAGQQPAQP CASQFDASRHVVLPGLVNTHHHFYQTLTRAWAPVVNQPLFPWLKTLYPVWARLTPEKL ELATKVALAELLLSGCTTAADHHYLFPGGLEQAIDVQAGVVEELGMRAMLTRGSMSLG EKDGGLPPQQTVQEAETILADSERLIARYHQRGDGARVQIALAPCSPFSVTPEIMRAS AEVAARHDVRLHTHLAETLDEEDFCLQRFGLRTVDYLDSVGWLGPRTWLAHGIHFNAE EIRRLGEAGTGICHCPSSNMRLASGICPTVELEAAGAPIGLGVDGSASNDASNMILEA RQALYLQRLRYGAERITPELALGWATRGSARLLGRSDIGELAPGKQADLALFKLDELR FSGSHDPLSALLLCAADRADRVMVGGAWRVVDGAVEGLDLAALIARHRAAASALIAG* " /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: guanine deaminase activity [goid GO:0008892] [evidence IEA]; " gene 163363..164415 /locus_tag="PA0143" /name="nuh" CDS 163363..164415 /function="Nucleotide biosynthesis and metabolism" /product_synonym="nucleoside hydrolase" /protein_id="NP_248833" /note="GO_process: nucleotide metabolic process [goid GO:0009117] [evidence IDA]; " /db_xref="GI:119167454" /localization_and_confidence="Periplasmic, Class 1 (primary); Unknown, Class 3 (primary)" /product="purine nucleosidase Nuh" /translation="MSRAARPCNRFCSLLLGLALLMPASLPLSAAETVAPPSPRTLII DTDPGADDVIALLFAMASPKELKIQALTTVAGNVPLEKTARNARLAREWGKRPDIPVY AGAPRPLLRTPIYAADVHGSEGISGVEVHEPKQPLAEGNAVDYLIRTLRAAPEKSVTL AMLGPETNLALALTQAPDIVKGVREIVIMGGAHFNGGNITPAAEFNIFADPHAAEIVL KSGAPITMLPLDVTHKILTSPERIAKLRNLGNQAGKTVADILDAYVQYDIKYYGLKGG PVHDATVVAYLLKPSLFKGKRINVQVDSREGITFGQTVADWYGGLKQPANVEWINEGD AQGFFDLLTERIARLP*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(164443..165069) /locus_tag="PA0144" CDS complement(164443..165069) /db_xref="GI:15595342" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248834" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSRSNGSSSRRTFLRLAALLLPAGALLGSLPGVRAAARPRKLYL AGPDVFRADAVAHGEALKALCARYGFEGLYPLDNALPKQLAEPREQAAWIYRANIGLI ERADAVLANLNFFRGAEPDSGTAFEVGYATALGKPVYGYVDDAGSYAERIRRHAPELI GEDPTRDRDGMTLEEFGLPLNLMLAVPATLVVGDAEQALRQLASRRHG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(165219..165737) /locus_tag="PA0145" CDS complement(165219..165737) /db_xref="GI:15595343" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248835" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MTAIYLAGPDVFRPDAEAHGETLKALCAEFGFVGLYPLDHALPA DIREPAAQAAWIYRANVGLIERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYA YLSDAGAYAERLARLAPEWLGEHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREA LRRLAEELGGNA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 165976..167073 /locus_tag="PA0146" CDS 165976..167073 /db_xref="GI:15595344" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248836" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MKHRRTQSRMSVLRRLAAVLGLGACALAAEAAEPLKIGFVYVGP VGDHGWTYQHELGRRELVEHFGDKVKTSFVENVAEGADAERVIRNLAKDGYGLVFTTS FGYMNPTAKVARQFPKVTFEHATGYKRDRNLGTYLSRSYEGRYVGGFLAAKMTRSHKI GYIASFPIPEVIRDINAIQLALDKYDPQAELKVMWVSTWFDPGKEADAANALIDQGVD VVFQHTDSPAPIQAAERRGVYAVGYASDMQHFGPKTVLTSIVNDWGPHYIRSAQAVMD GTWKSEDFWGGLAESTVVLPLNQEVLPAPVREEAGRLIESIRSGAFHPFTGPIRDQSG KERFAAGVSATKADLASMNYYVEGIKADLPK*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 167146..168108 /locus_tag="PA0147" CDS 167146..168108 /db_xref="GI:15595345" /function="Putative enzymes" /protein_id="NP_248837" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable oxidoreductase" /translation="LDRLPIIDIAPLYGADRGAWNDVARRIDQACREWGFFYIAGHPL PAARFEALLAAAREFFALPVEEKLKIDITRSRNHRGYGAIATEQLDPALPSDFKETFD MALHLPAEHPDVRAGKSFYGPNRHPDLPGWEALLEGHYADMLALARTVLRALAIALGI EEDFFDRRFEQPVSVFRLIHYPPASARQSADQPGAGAHTDYGCVTLLYQDAAGGLQVQ NRQGEWIDAPPIDGTFVVNIGDMMARWSNDRYRSTPHRVISPRGVHRYSMPFFAEPHM DTEIRCLPGCFDADNPPKYPPTTCGDWLTSRFAQTYAYRRGETA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 168213..169163 /locus_tag="PA0148" /gene_synonym="add" CDS 168213..169163 /db_xref="GI:15595346" /function="Nucleotide biosynthesis and metabolism" /protein_id="NP_248838" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="adenine deaminase" /translation="MYEWLNALPKAELHLHLEGTLEPELLFALAERNRIALPWNDVET LRKAYAFNNLQEFLDLYYAGADVLRTEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTH TDRGIPFEVVLAGIRAALRDGEKLLGIRHGLILSFLRHLSEEQAQKTLDQALPFRDAF IAVGLDSSEVGHPPSKFQRVFDRARSEGFLTVAHAGEEGPPEYIWEALDLLKVERIDH GVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSDD PAYFGGYVTENFHALQQSLGMTEEQARRLAQNSLDARLVK*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: purine salvage [goid GO:0043101] [evidence IEA]; GO_function: adenine deaminase activity [goid GO:0000034] [evidence IDA]; " gene 169361..169906 /locus_tag="PA0149" CDS 169361..169906 /db_xref="GI:15595347" /function="Transcriptional regulators" /protein_id="NP_248839" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable sigma-70 factor, ECF subfamily" /translation="LPADGEAARRADLLKAFLAQRQRMESLVSRWVGCRATAADLVQE LFLRFWRRPAAPVEELGSYLLRSARNLAIDHLRGEGSRQRQLDDWLPEQRQGEPVGPE QALEAGDQWRRVEAALRGLPERTRRIFLLNRIHGRTYAEIAQAMQLSQSAVEKHMMRA LDACKASLAGPAGEQARSAQP*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 169903..170898 /locus_tag="PA0150" CDS 169903..170898 /db_xref="GI:15595348" /function="Membrane proteins; Transcriptional regulators" /protein_id="NP_248840" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="probable transmembrane sensor" /translation="MTRPDSDAAPYEPVLEQTAQAWLVRLRGTPDAATRRAFEDWLAQ RPAHAEAYARAEALWRLTEIPASRLAIEEADALEAYLRPRRASRNPRRWAYPLASVAC LLAMLWLGGWWQPGDWLQDWRADYVAAPGQVAEWKLADGSYLSLDAGSAVRVRIDGGQ RRVELLRGAAALRVKRDALPFVVEAGEGRARVLGTEFEVRRGAGATRVTVLQGRVAVS AGTGAGAAEEVLGAGQQVGFADGKLGRPVAIDAAAALAWRQGWLSFYRRPLAEVLDEL ARYYPGRILLLDDALGRQPVSGSFRSDDPEAALKSLQAVLGYRQQILFGRLVVIR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 171047..173434 /locus_tag="PA0151" CDS 171047..173434 /db_xref="GI:15595349" /function="Transport of small molecules" /protein_id="NP_248841" /localization_and_confidence="Outer Membrane, Class 2 (primary); Outer Membrane, Class 3 (primary)" /product="probable TonB-dependent receptor" /translation="MTPFPRFALRTLPALFLSLGCLAATVQAAEAVRYRFSQAAAPLA QALNAFSRASGQTLLYTAELPPQATAPALHGSLVAEEALQRLLQGSGLRARRIDERTL TLEPIPASGALDLDATTVSAAAPAQGYRPAANASISRGDAPVLEIPQAISVVPAQALQ DQRPRNLDDALGNISGITQANTLGGTQDAVMKRGFGDNRDGSIMRDGMPSVQGRNFTA TADHVEVLKGPASLLYGIQDPGGVVNVVSKKPQLQQANALTLRGSAYAHGRNGSGGQL DSTGPLGDSGLAYRMILDHEDEDYWRDFGKSRETLVAPSLAWYGEDTTVNLSYEHREF TTPFDRGTAIDPRTNRPLDIPRSRRLDEPFNITEGRSELTRLDLERQLDDTWKAHFGY GYSRETYDDNQARVMAVNADGTLTRRMDGTHGAVSSDSFTTLGLSGTLQLAGMQHDLQ FGMDHEKRKIFRADLLRDSKTSRFDYLDPVYGQVVPSTRVVAGDSDQTDKLRSDSLYF QDSIHLDERWILVGGARYQIYDQLAGRGRPFNANTDINGQKWVPRGGLVYRLSDEVSL YGSYMRSFKPNSTIAPLSTGETIDSAILPEEATSWELGAKLDVPGRLSGTLALFDIRK KNVLVNELDGAGNSSVRAAGRVRSRGLELDLTGQLSERWSLIGSYAWLAAEVTEDPTL EGKRLQNVARNTASLSAVYELGQLFGGDRLRLGGGARYVGKRPGDPANSFDLPSYTVA DAFASYDTRFGGHGVKFQLNVKNLFDRTYYPSSANRLYVAMGEPRQFQVSTTVEF*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: outer membrane [goid GO:0019867] [evidence IEA]; " gene 173811..174638 /locus_tag="PA0152" /name="pcaQ" CDS 173811..174638 /db_xref="GI:15595350" /function="Carbon compound catabolism; Transcriptional regulators" /protein_id="NP_248842" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="transcriptional regulator PcaQ" /translation="VAVSQPAISKTLKELEEILGARLFERSKAGAELTEAGVTFLRYA GPCVQALRDGVNTLRGHEAQVETVRVGVLSTVESLVVPEVIRRLHRRHGALVVSVATG PSAYLLAQLKVGELDLVVGRMTDSPDIQGLTFEHLYSESMMLVVRPGHPLLAAPLGDL QRLAEFPLVLPLAGTTIRRHADSLFVQWGIALAGQRLETLSPTLSRSYVLRSEAIWVA PRDAVRLDVGNGELAELDLGIREPGGSVGLCHNAALPLPLGAQWFSAVLREVAAELH* " /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_function: transcription regulator activity [goid GO:0030528] [evidence ISS]; GO_process: positive regulation of transcription, DNA-dependent [goid GO:0045893] [evidence IEA]; " gene 174773..175492 /locus_tag="PA0153" /name="pcaH" CDS 174773..175492 /db_xref="GI:15595351" /function="Carbon compound catabolism" /protein_id="NP_248843" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="protocatechuate 3,4-dioxygenase, beta subunit" /translation="MHDAESRRFVIRDRNWHPKALTPDYKTSVPRSPSQALVSIPQSL SETSGPDFSHLRLGRHDNDLLLNFDHGGLPQGERIIMFGRVFDQYGKPVPHTLVEMWQ ANAGGRYRHKNDRYLAPLDPNFGGVGRTLTDSEGHYYFRTIKPGPYPWRNGPNDWRPA HIHVSVSGPAIAARLVTQMYFEGDPLIPKCPIIRTLADPEAAQSLIGRLDMSMANPMD CLAYRFDIVLRGQRKTFFENA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: protocatechuate metabolic process [goid GO:0046278] [evidence IEA]; " gene 175503..176108 /locus_tag="PA0154" /name="pcaG" CDS 175503..176108 /db_xref="GI:15595352" /function="Carbon compound catabolism" /protein_id="NP_248844" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="protocatechuate 3,4-dioxygenase, alpha subunit" /translation="MSHELLRETPSQTAGPYVHIGLALAAAGNPTRDLEIWNRMAREG ARGQHILLLGHVYDGNGHLVRDSFLEFWQADSEGRYQERYDPERPFNSFGRTATTFDA GEWTLHTVKPGVVRNAQGVPMAPHINVSLFARGINIHLQTRLYFDDETEANAACPVLN LIEQAPRRDTLLAQRCEVDGQLAYRFDIRIQGDNETVFFDF*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: protocatechuate metabolic process [goid GO:0046278] [evidence IEA]; " gene 176315..177154 /locus_tag="PA0155" /name="pcaR" CDS 176315..177154 /db_xref="GI:15595353" /function="Carbon compound catabolism; Transcriptional regulators" /protein_id="NP_248845" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="transcriptional regulator PcaR" /translation="MSELPEHPATLAPPTVLSPAKRIEAFTGDPNFMTSLARGLAVIH AFQERKRHLTIAQISHRTEIPRAAVRRCLHTLMQLGYATTDGRTYSLLPKVLTLGHAY LSSTPLAITAQPILDRLSEQLHEACSMATLEGDDVLYIARSATPQRLISVDLNVGSRL PAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRTLYTPETLLPCLVEIRRQGWCIV DQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRAELESRFLPLLLEASRELSAR LFT*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence ISS]; GO_function: transcription regulator activity [goid GO:0030528] [evidence ISS]; " gene 177307..178458 /locus_tag="PA0156" /gene_synonym="triA " /name="triA" CDS 177307..178458 /function="Membrane proteins; Antibiotic resistance and susceptibility" /product_synonym="probable RND efflux membrane fusion protein precursor; Resistance-Nodulation-Cell Division (RND) triclosan efflux membrane fusion protein, TriA efflux membrane fusion protein precursor)" /protein_id="NP_248846" /note="GO_process: transport [goid GO:0006810] [evidence IEA]; " /db_xref="GI:15595354" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="Resistance-Nodulation-Cell Division (RND) triclosan efflux membrane fusion protein, TriA" /translation="MSDARGAFHSKGRWSRMALPAILCAGLLVGCGAEPPAEEHVRVL AQTVKMAEFASATSITGDIQARVQADQSFRVGGKIVERLVDVGDHVAAGQVLARLDPQ DQRSNVENAQAAVAAQQAQSKLADLNYQRQKALLPKGYTSQSEYDQALASVRSAQSSL KAAQAQLANARDLLSYTELRASDAGVITARQAEVGQVVQATVPIFTLARDGERDAVFN VYESLFSHDVDGQRITVSLLGKPEVTASGKVREITPTVDERSGTLKVKVGLDSVPAEM SLGSVVNASVAAPAEHSVVLPWSALSKVGEQPAVWLLDQQGKARLQPVRVARYASEKV VIDGGLEAGQTVVTVGGQLLHPGQVVEVAQPPQPTQSTASRDAVGGGQP*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 178455..179525 /locus_tag="PA0157" /gene_synonym="triB " /name="triB" CDS 178455..179525 /function="Antibiotic resistance and susceptibility; Membrane proteins" /product_synonym="probable RND efflux membrane fusion protein precursor; Resistance-Nodulation-Cell Division (RND) triclosan efflux membrane fusion protein, TriB efflux membrane fusion protein precursor)" /protein_id="NP_248847" /note="GO_process: transport [goid GO:0006810] [evidence IEA]; " /db_xref="GI:15595355" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="Resistance-Nodulation-Cell Division (RND) triclosan efflux membrane fusion protein, TriB" /translation="MKPFSLAGLFGFALLLSGCGDEPPPAPPRPVLTVTVKTLKNDDL GRFAGSIQARYESVLGFRTNGRIASRLFDVGDFVGKGALLATLDPTDQQNQLRASQGD LASAEAQLIDAQANARRQEELFARSVTAQARLDDARTRLKTSQASFDQAKAAVQQARD QLSYTRLVTDFDGVITTWHAEAGQVVSAGQAVVTLARPEVREAVFDLPTEVAESLPAD ARFLVSAQLDPQARTTGSIRELGPQADASTRTRRVRLSLAQTPEAFRLGSTIQVQLSS AGSVRSVLPASVLLERDGKTQVWVVDGKQSSVALREVQVLSRDERQVVIGQGLADGDR VVRAGVNSLKPGQKIKLDEDAR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 179522..182569 /locus_tag="PA0158" /gene_synonym="triC " /name="triC" CDS 179522..182569 /function="Antibiotic resistance and susceptibility; Transport of small molecules" /product_synonym="probable RND efflux transporter; Resistance-Nodulation-Cell Division (RND) triclosan efflux transporter, TriC efflux transporter)" /protein_id="NP_248848" /note="GO_function: metal ion:hydrogen antiporter activity [goid GO:0051139] [evidence IEA]; " /db_xref="GI:15595356" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="Resistance-Nodulation-Cell Division (RND) triclosan efflux transporter, TriC" /translation="MKGGFNLSDWALRHQSLVWYLMAVSLVMGVFSYLNLGREEDPSF AIKTMVIQTRWPGATVDDTLEQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLKDT TKAGDIPDIWYQVRKKISDIQGEFPQGIQGPGFNDEFGDVFGSVYAFTADGLDFRQLR DYVEKVRLDIRSVKDLGKVQMIGAQNEVIYLNFSTRKLAALGLDQRQVVQSLQAQNAV TPSGVVEAGPERISVRTSGNFRSEKDLQAVNLRVNDRFYRLSDLASISRDFVDPPTSL FRYKGEPAIGLAVAMKEGGNILEFGEALNARMQEITGELPVGVGVHQVSNQAQVVKKA VGGFTRALFEAVVIVLIVSFVSLGLRAGLVVACSIPLVLAMVFVFMEYTDITMQRVSL GALIIALGLLVDDAMITVEMMITRLELGDSLHDSATYAYTSTAFPMLTGTLVTVAGFV PIGLNASSAGEYTFTLFAVIAVALLLSWIVAVLFAPVIAVHILPKTLKHKSEQKKGRI AERFDSLLHLAMRRRWTTIFLTALLFGVSLFLMKFVQHQFFPSSDRPELLVDLNLPQN SSIHETRAVMDRLEATLKDDEDIDHWSAYVGEGAIRFYLPLDQQLQNNFYGQLVIVTK DLEARERVAARLRDRLRKDYVGISTYVQPLEMGPPVGRPIQYRVSGPQIDKVREYAMG LAGVLDGNPNIGDIVYDWNEPGKMLKIDIAQDKARQLGLSSEDVAQIMNSVVTGSAVT QVRDDIYLVNVIGRAEDSERGSLETLESLQIVTPSGTSIPLKAFAKVSYELEQPLVWR RDRKPTITVKASLRGEIQPTDLVARLAPEVKRFADGLPANYRIEVGGTVEESGKAEGP IAKVVPLMLFLMATFLMIQLQSVQKLFLVASVAPLGLIGVVAALLPTGTPMGFVAILG ILALIGIIIRNSVILVTQIDAFEKDGKTPWEAVLEATHHRTRPILLTAAAASLGMIPI AREVFWGPMAYAMIGGIVAATLLTLIFLPALYVAWYRIPEPGR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 182768..183706 /locus_tag="PA0159" CDS 182768..183706 /db_xref="GI:15595357" /function="Transcriptional regulators" /protein_id="NP_248849" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="VDTLQGMRVFARVVDSGSFTSAAQALDLSTAQVSRLISDLEAHL QTRLLHRTTRRLALTEAGERYLERCRGILEDIEVAEAEAAGAHIRPCGRLRVQSLMGM GQHHLVPMIARYGALFPDVVIELTLSQRNPDMLEEGQDVLITGERQLPDSEFVAQRLG SIHSVLCASPGYLQQHGVPRSVDDLERHVCLRLQDPAYPEGWIFADEQGERTVSPQNT FMVNVAEVMAQAAKADLGIALLPSYVAAAALRNGELLRVLPGHAMHQRTIYALYPSRR YLDAKIRTWVDLLQQELPQAFARDETTMQSSSYCAQ*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 183822..184007 /locus_tag="PA0160" CDS 183822..184007 /db_xref="GI:15595358" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248850" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MNRQILAAAILSLFSLAFSQAGFAEESSLMTNRMVDANQQAIEH QQELSASAAQAGARSDS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 184287..184439 /locus_tag="PA0161" CDS 184287..184439 /db_xref="GI:15595359" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248851" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VESLKPDESKRLSIEESDCVSAGFQCPEIHWQDFPTPNFDCSYS TSSQGR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 184594..185928 /locus_tag="PA0162" /gene_synonym="opdC " /name="opdC" CDS 184594..185928 /function="Membrane proteins; Transport of small molecules" /product_synonym="histidine porin OpdC " /protein_id="NP_248852" /db_xref="GI:15595360" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Outer Membrane, Class 2 (primary); Outer Membrane, Class 3 (primary)" /product="histidine porin OpdC" /translation="MRNLFALTPMALALCTASAAWADEGEAKEGFIEGSSLQLLTRNY YFNHDRRHASGHDSKEWAQGFIATFQSGYTPGVVGFGVDAYGMLGLKLDGGGGTGGTS ILPITSPSKEGYESGKAPDEFSSGGAALKIRAFDTELKLGDQFLSNPVVAGGESRMLP QTFRGVSLTNNSFEDLTLTAGQVSFTKYYNQSGHRRLGSYYGELPGDRDSHHLSWLGG TWGGIEGFTSSLYAAELQNVWKQYYADVDYTYEIDDNWSLNPGAHYYKTVDSGDSLLG RIDNNTYSLHFAVGYRQHTVTAVLQKVNGNTPFDYINQGDSIFLDNSQQYSDFNGPNE KSWKLQYDYDFVALGLPGLSASASYSRGKLDLTRVDPDSPGYGGWYSADGKNAKHWER DLDLQYVVQGGPAKDLSLRLRWATHRGTGGYSAVDNDIDEYRVIVDYPIDVF*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(185957..186754) /locus_tag="PA0163" CDS complement(185957..186754) /db_xref="GI:15595361" /function="Transcriptional regulators" /protein_id="NP_248853" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MTMNGQPAELHRPIPTLARLPRPVYARAESLRAGSWTSRHRHAW VQLSYAISGVLGVHTAEGSFFAPPQRAIWIPAQLEHEVVTSTRAEMRSLYIRGDACAW APTRCRVLEVTPLARELIKSFCELPVDYPEGDSAESRLVQVLLDQLRLLPEVAFSLPM PREPRLLRLCQALIDEPTQSLTMGDWAQRLGTSEKTLSRLFQRETGMNYRLWRQRQRL LASLNALEAGDSVTGAALDSGYDSTSAYIAAFKGLFGFTPGELFRQR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 186832..188448 /locus_tag="PA0164" CDS 186832..188448 /db_xref="GI:15595362" /function="Amino acid biosynthesis and metabolism" /protein_id="NP_248854" /localization_and_confidence="Periplasmic, Class 2 (primary); Periplasmic, Class 3 (primary)" /product="probable gamma-glutamyltranspeptidase" /translation="MLDFSAHALPYASQRSPVHARRGMVATSQPQAAQVGLEILRRGG NAIDAAIATAAALTVVEPTGCGIGGDAFALVWTRGRLHGLDASGRAPGLLDRERVRAA GHERMPLYGWTPVTVPGCPAAWGELSRRFGKLPFEQLLRPAIELARDGFPVSPVIARL WQSGLDKFRAALPQRPELRAWFDEFLIDGRAPRAGEVFRQPGQADTLDELARSQCESF YRGELARAIVGHAECSGGYLRAEDLAGYQAKWVEPISLNYRGYDVWEIPPSGQGLIAL MTLNILKGFEFGERDCARTWHRQLEAMKLAYVDGLHYISQPQSMRVSVEELLHEDYAA SRRALIGERALDPSPGQPRPGGTVYLACGDEEGNLVSFIQSNYHGFGSGVVVPGTGIA LQNRGAEFSLDPDHVNCLEPGKQTFHTIIPGFLSKDGVPLGPFGVMGAYMQPQGHVQM VMNLVDFGLNPQAALDAPRWQWLGGLRVGIEHAAPRALAAELAQRGHQVEIAYDSTSY GRGQIVLRDPASGVLCGGTEPRTDSQIAVW*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: glutathione biosynthetic process [goid GO:0006750] [evidence IEA]; " gene 189120..189956 /locus_tag="PA0165" CDS 189120..189956 /db_xref="GI:15595363" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248855" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Outer Membrane, Class 2 (primary); Outer Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MSRTLATVMLAGGLLAAGQAVAEDHDMTPTHETDSGPLLWHNES LTYLYGKNFKINPPIQQTFTLEHASGWTWGDLFIFFDQINYNGKEDASNGKNTYYGEI TPRLSFGKLTGADLSFGPVKDVLLAGTYEFGEGDTEAYLLGPGFDLAIPGFDYFQLNF YYRKPDGNRVRAGAWQITPVWSYTIPVGNSDILIDGYMDWVINNKSASTSRRNQSDYH ANLHFNPQVKYDLGKALGYEPKHLYVGLEYDYWSDKYGVKDSQYFTTDQNTASFLVKY HF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 190198..191604 /locus_tag="PA0166" CDS 190198..191604 /db_xref="GI:15595364" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248856" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="probable transporter" /translation="MHSEDQRPNDLIYGLDDRPRPLPAFLAALQHVLASFVGIVTPPL VIGSLLGLGEHLPYLISMALMVSGAGTLIQARRPFGIGAGMICLQGTSFAFLGAVLAA GMLVKQRGGGPEEILAMIFGVCFFGAFVQIVLSRFLGHLRRVITPLVTGIVITLIGVS LIKVGITDLGGGAGATDFGAPANLALGALVLLSIVLLNRSRLPWLRLAAIVIGLALGT LAAWATGLFVPRALPELPLVSLPQPFRFGFAFDWMAFLPVALIYLISSIETVGDLTAN CMLSRQPLEGPAYLQRLRGGVLGDGVSCLLAATFSAFPNTTFAQNNGVIQLTGVASRH VGIYIGGVLLALGLFPWVGAILQQIPKPVLGGATLVMFGSVAAAGIRILGQTAMDRRS VLIIAASFGVGLGVAAQPTLLDQMPAVVKTLFDSAITSGGITAILLNLLLPEERVAEA AQASAKGGALARWRKPLG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: xanthine transmembrane transporter activity [goid GO:0042907] [evidence IEA]; " gene 191697..192362 /locus_tag="PA0167" CDS 191697..192362 /db_xref="GI:15595365" /function="Transcriptional regulators" /protein_id="NP_248857" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MTLTVPAHDPAARDKPAGRIRQKNEEAILAAAEEEFARHGFKGT SMNTIAQNVGLPKANLHYYFGNKLGLYTAVLSNILELWDSTFNTLGVDDDPAEALARY IRAKMEFSRRYPLASRIFAMEIISGGECLTAHFNQDYRSWFRGRAAVFEAWIAAGRMD PVDPVHLIFLLWGSTQHYADFASQIGLVTGRKRMSRQDFAAAADNLVRIILKGCGLTP PAA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 192368..192958 /locus_tag="PA0168" /gene_synonym="yigZ" CDS 192368..192958 /db_xref="GI:15595366" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248858" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MPSTLQGLAEYREEIRKSRFHTIAAPVADEDEAQAFIAAHRDAS AGHNCWAWKCGAQYRFSDDGEPGGSAGRPILAAIEGQDMDCVAVLVSRWFGGIKLGTG GLARAYGGGAAKCLQQAPRSELVERCRVRFACAFADHALLKARSLALGASVAAEDYGA DGVVLTLELPVARFEALQALLVDLSRGQVRPQRLDA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." CDS complement(192965..193672) /db_xref="GI:15595367" /function="Motility & Attachment" /protein_id="NP_248859" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="SiaD" /translation="VRLERIARISDGFQSMAREQNLSLSERYHKQLRRLEKVARISDR YQQMMRDLNLALKEASIRDPLTGLPNRRMLLERLREENERSQRHGQSYVLAMLDVDFF KQVNDTWGHDSGDRVLVEIARAMESELREYDLCGRWGGEEFLLLLPQTRLQDAGPVLE RVRDSVRTLAVRVGTEALSVTASVGVTEHRIGETYSQTVNRADAALLDAKRSGRDKCV FAALPPLPAPSRPAPAR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: cyclase activity [goid GO:0009975] [evidence IEA]; " gene complement(192965..193672) /locus_tag="PA0169" /name="siaD" gene complement(193799..194179) /locus_tag="PA0170" CDS complement(193799..194179) /db_xref="GI:15595368" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248860" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSDLHIPGTQSTPAIQGDWQAGRLSMQGDSYPENSYELFGQVID WVERFLADGQRPLELDLRLLYLNTSSIKAMMDILDLLEEAHQGGRPVSLRWHYDRRNE RVAELAEEFREDCSFPFAIQAHDE*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(194206..194748) /locus_tag="PA0171" CDS complement(194206..194748) /db_xref="GI:15595369" /function="Motility & Attachment" /protein_id="NP_248861" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="METLDLLAMRESYTRQRILLCFNGPISRSLIEEIGHALRNYLHA EQAKPSEAMDVFAVYIEMTQNIRHYANLKGYGEHEAAATVAIARNEDGHYVVSAGNLV ERDDGQSLVRSIQAIANLDKAALKAAYKEQLRRPRDSGCASGAGLGLLDIARKSSEPL AASLKEQPDGRAFFSLRAVI*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." CDS complement(194757..196748) /db_xref="GI:15595370" /function="Motility & Attachment" /protein_id="NP_248862" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="SiaA" /translation="MAANWGLRGKSVVALLLACALALVPAVLLGWRAMDDIRTHFGLA YAKNFTLLHRQKILAPVSRELALSRRFAESVVTRDWLLKEDDPARRALFFREAEGYRG DFRDHAYFIIASGSHHYYFNDGRQPYSERPRYTLEAGDPEDAWYFNTLRNSAAYNINV NVDSKLNLTKVWFNLVIRDQGRPIGLAGSGLDLSGFLDDFIIAREPGVTPMIVGDDGA IQAHPDRRLIAYSSAAGGASERHRVFDLLDQPEQRDALREAMRLARAKAGSVHCLWAG LDGRQQLFAVAYIPQLRWYVLTAVDLHAAQVLDNRWLWPLAGTFLLLLVALLLGFAYA VERLLLRPLRSLKRSAKAIAAGRYDTPLPLARQDEIGSLSKAFASMADQVRRHTAELE DKVQERTQALEEANREMAAAQKKIGDSLDYASLIQRAILPDRQLSATLGEHHFILWKP RDVVGGDFYVYREQADGYLIGVVDCAGHGVPGALMTMLARAAIDHAIEAVGSRDPAAI LGETDQAMRSMLSQEQIPQALATNMDAGLVWVDRRRRQLAFAGAKISLYASDGEEVQE LKGARRAIGDKRRGDYRNIEVPLAPGWTFYLSTDGFLDQAGGEHGFGFGSRRFADMLR DHARQPLPEQAEAFVATLAEYQGEHPQRDDITILSFRFD*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(194757..196748) /locus_tag="PA0172" /name="siaA" gene complement(197011..198060) /locus_tag="PA0173" CDS complement(197011..198060) /function="Adaptation, Protection; Chemotaxis" /product_synonym="response regulator for chemotaxis" /protein_id="NP_248863" /note="GO_process: regulation of sporulation resulting in formation of a cellular spore [goid GO:0042173] [evidence IEA]; " /db_xref="GI:15595371" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable methylesterase" /translation="MPISVLVVDDSALIRSLLKEIIQADPELRLVGCAPDAFVARDLI KQHAPDVISLDVEMPRMDGLTFLDKLMKARPTPVLMISSLTERGSEATLRALELGAVD FIAKPRLGIAEGMQAYAEEIRAKLKTVARARLRRRAADAPAPPESAAPLLSTEKIIAL GASTGGTEALKEVLLGLPAHSPGVVITQHMPPGFTRSFAERLDRLTRLSVSEARDGDR ILPGHALVAPGDHHMEVQRSGANYVVRLNRQAQVNGHRPAVDVMFESLARCAGRNLLA GLLTGMGKDGARGLLAIRQAGGYTLAQDEATCVVYGMPREAVELGAAEDVLPLERIAA ALLQQAARRGSGNRL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(198080..198682) /locus_tag="PA0174" CDS complement(198080..198682) /db_xref="GI:15595372" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248864" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MNLQAREGAPLNRYYDPYFACDAVKLLPGEYFASGEDLVIVTVL GSCVSVCLRDPLNGIAGMNHFMLPERGLGGDPASPSARYGSHAMELLINRMLALGASR ERLQAKVFGGGSVLRQISAAIGQRNVEFTLDYLATERIPLLASDVLEAFPRKIYFFPR NGRVLVKSLVELKNDTVLQRERDYRRRIDRNADGGPIDLF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(198688..199530) /locus_tag="PA0175" /gene_synonym="cheR2" CDS complement(198688..199530) /db_xref="GI:15595373" /function="Transcriptional regulators; Adaptation, Protection; Chemotaxis" /protein_id="NP_248865" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable chemotaxis protein methyltransferase" /translation="MPTSTPSPVFGNQEFHYTREDFQQVRERLYRLTGISLAESKAQL VYSRLSRRLRLLRLGSFAEYFTHLDREPGEQQLFVNALTTNLTAFFRERHHFPLLADL ARRQLQRHRPLRIWSAAASTGEEPYSIAITLVEALGSFDPPVKIVASDIDTGVLDCAR QGVYPLERLEQMPAPLKKRFFLRGTGPNAGKARVVEELRQLVEFRQINLLEADWSIAG ELDAIFCRNVMIYFDKPTQTRLLERMVALLRPEGLFFAGHSENFVHASHLVRSVGQTV YSPA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(199600..201639) /locus_tag="PA0176" /name="aer2" CDS complement(199600..201639) /function="Adaptation, Protection; Chemotaxis" /product_synonym="methyl-accepting chemotaxis protein" /protein_id="NP_248866" /db_xref="GI:15595374" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="aerotaxis transducer Aer2" /translation="MGLFNAHAVAQQRADRIATLLQSFADGQLDTAVGEAPAPGYERL YDSLRALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARIAK GVNELVAAHIAVKMKVVSVVTAYGQGNFEPLMDRLPGKKAQITEAIDGVRERLRGAAE ATSAQLATAAYNARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLP NFDAGRLMGANIDVFHKNPAHQRHLLANLTGVHKAELNLGGRRFSLDVVPVFNDANER LGSAVQWTDRTEEHRAEQEVSQLVQAAAAGDFSKRVEEAGKEGFFLRLAKDLNSLVDT ADRGLRDVSRMLGALAQGDLTQRIEADYQGTFGQLKDFSNDTAQSLSRMLGQIREAAD TINTAASEIASGNAELSARTEQQASSLEETASSMEELTSTVKLNAENARQANSLAANA SEVATQGGTVVQKVVSTMSSINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGE QGRGFAVVAGEVRTLAQRSAAAAKEIKTLISDSVDKVENGNTLVAQAGQTMSDIVVAI RRVTDIMSEIAAASAEQSTGIEEVNSAVSQMDDMTQQNAALVEEAAAAAEAMQEQAGL LNQSVAVFRLDTPPSVVQLASARPSAPRPSAPAPLARSGMARASKARKEDGWEEF*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(201675..202160) /locus_tag="PA0177" CDS complement(201675..202160) /db_xref="GI:15595375" /function="Adaptation, Protection; Chemotaxis" /protein_id="NP_248867" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable purine-binding chemotaxis protein" /translation="MNGTEASQANGPAQEYLTFTLGREEYAIDILRVQEIRGYDQVTA IANAPPFIKGVINLRGAIVPIVDLRIKFHLAEVTYDPFTVVIILNIGRRIVGVVVDSV SDVIALGGDAIRPPPEFGASFDTEYLLGLATAGERMLILVDIERLMTSREMALVDEAA A*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(202147..204066) /locus_tag="PA0178" CDS complement(202147..204066) /function="Chemotaxis; Adaptation, Protection; Two-component regulatory systems" /product_synonym="probable chemotaxis protein sensory transduction histidine kinase" /protein_id="NP_248868" /note="GO_function: protein histidine kinase activity [goid GO:0004673] [evidence IEA]; " /db_xref="GI:15595376" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable two-component sensor" /translation="MPQDMSQFLQVFFEETEEHLATLELLLIGLDLDRPDSETLHGIF RAAHSIKGSSGMFGFDDITAVTHELETLLDRIRCGQMHLRPDMISSFLEARDVLQRLL DAHRSGRPDPGVPLLETVERLRGWLRVPEQEAAEEGFGLFDDAPARETADDDAFGFFD EGPGAPERAAAPEAFGLFDEAPGAPAASEAFGLFDEAPGSPPAEERAFGLFDGAPGSP AAPSAPAQAVAAPARGAVAPVRGDGESGSIRVSVEKIDSLINLVGELVITQAMLGQLG EQLDPSRHERLQHALAQLEHNTRDLQESVMSIRMLPINFIFSRFPRLVRDTATRLGKQ VELHLHGEHTELDKSVIEKLSDPLTHIVRNSIDHGIETPAERLAAGKPASGTVKLAAS HQGGSVVVEVSDDGRGLSRPRILAKARERNLPVHDGMSDAEVWQLVFMPGFSTAETVT ELSGRGVGMDVVKRNIGAMGGRIDIDSAPGMGTRIGIRLPLTLAILDGLIVAVEAVNY VIPLTYIVESLQARSDDVRGLGGEDNAMIRVRGEYLPLFSLHELLRIGGEAPAPEQGI VVILESEGRSFALQVDELVGQQQVVIKSLEQNFRRVEGIAGATIMGDGSVALILDVDA LPRLAAREDTADERH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(204094..204459) /locus_tag="PA0179" CDS complement(204094..204459) /function="Chemotaxis; Adaptation, Protection; Two-component regulatory systems" /product_synonym="probable chemotaxis response regulator" /protein_id="NP_248869" /note="GO_process: phosphate metabolic process [goid GO:0006796] [evidence IEA]; " /db_xref="GI:15595377" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable two-component response regulator" /translation="MGKPILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQS KSYSLVFTDQNMPNMDGLSLIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGW LVKPFDPPKLLEVTRKVLP*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(204657..205829) /locus_tag="PA0180" /gene_synonym="mcpA" /name="cttP" CDS complement(204657..205829) /function="Adaptation, Protection; Chemotaxis" /product_synonym="McpA" /protein_id="NP_248870" /note="GO_process: chromosome condensation [goid GO:0030261] [evidence IEA]; " /db_xref="GI:15595378" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="chemotactic transducer for trichloroethylene [positive chemotaxis], CttP" /translation="MRESLGVSLPSRPLLLKLGLLSLPWALCAGLHAVGLGVWLVLAL GWFASLAMLVLLLRAPRQAVANANPQADAASPAWSAAQRALADETAQLDGHARQIDEL LHSAIRQLSDSFHGLAERIDTQRGLSHSLIERYDGRGQVDEGINFQDFVRTTQQTLSL FVEATLETSRTSQQLVERMDQVRLKITEILQSTQDMDAIAKQTNLLALNAAIEAARAG ESGRGFAVVADEVRALSTRSTEFSAAIRKHVDVVHHEIQDAESAISQLADKDMSFALD SKHKIQGMLDDLEAMNRHTLKVIHELDRLSLEVGQGVDAAVTALQFQDMGSQLLGQMR KHHARLGAFALGLGALEARPRQEWPERVAREVEELRRPLPSPVSQNSVNVGEVELF*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(206022..206954) /locus_tag="PA0181" CDS complement(206022..206954) /db_xref="GI:15595379" /function="Transcriptional regulators" /protein_id="NP_248871" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="METLSNIQCFVRSAEAGSFAEAARRLGLTPAGVGKNVARLESNL GVRLFQRSTRRLTLTEAGERFLQEVGGSLEGIQTALANVSSVGNQPSGTLKVSMGLAF GRDYILPLLGEFLERYPDIVPDWHFDNRQVDLIGEGFDAAIGGGFELPPGVVARNLTP GHLILLASPTYLRDKPPIRHPGDLGGFDGIRIRSPQTGRVRSWPLRRRNGEEAPIELR ERMTMSDPEATCEVAAMGLGITLVCMQHAYAYLESGALVRVLPDWYVDAGNTSLYYAA NKLLPAKTRVFVDFVVDYFRRQDLARRFSAFPTG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 207071..207823 /locus_tag="PA0182" /gene_synonym="yjgI" CDS 207071..207823 /db_xref="GI:15595380" /function="Putative enzymes" /protein_id="NP_248872" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable short-chain dehydrogenase" /translation="MSVSSASLAGKVAFVQGGSRGIGAAIVRRLAAEGASVAFTYVSS ADKSRALAAELEGAGASILALHADSADAAALVAAVDEAAARFGRIDILVNNAAVLALG SVEELPLADFERTLAINVRSVFVATQAAVKHMGDGGRVISIGSTNAERMPFAGGATYA MSKSALVGLTKGLARDLGPRGITVNNVQPGPVDTDMNPDDGDFAEALKGLMALPRYAR SEEIASFVAYLAGPEAAYITGASLTIDGGFSA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: fatty acid biosynthetic process [goid GO:0006633] [evidence IEA]; " gene complement(207923..209533) /locus_tag="PA0183" /name="atsA" CDS complement(207923..209533) /db_xref="GI:15595381" /function="Central intermediary metabolism; Carbon compound catabolism" /protein_id="NP_248873" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="arylsulfatase" /translation="MSKRPNFLVIVADDLGFSDIGAFGGEIATPNLDALAIAGLRLTD FHTASTCSPTRSMLLTGTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLR EAGYQTLMAGKWHLGLKPEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGT PALYVEDERYLDTLPEGFYSSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQAPR EIVEKYRGRYDAGPEALRQERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKS ARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPD LLGFLDRHYDNSLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYP RLSRQGAISHAFATVMDVTPTLLDLAGVRHPGKRWRGREIAEPRGRSWLGWLSGETEA AHDENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATWQLYDLARDPGEIHDLADSQPG KLAELIEHWKRYVSETGVVEGASPFLVR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence IDA]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence IDA]; GO_process: metabolic process [goid GO:0008152] [evidence IDA]; " gene complement(209621..210460) /locus_tag="PA0184" /gene_synonym="atsC" CDS complement(209621..210460) /db_xref="GI:15595382" /function="Transport of small molecules" /protein_id="NP_248874" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable ATP-binding component of ABC transporter" /translation="MNAFTAPATGTPLVSFRQVRKHFAVDGRRLEAIQQFDLEIGEGE FIAIVGASGCGKSTLLRLLIGLDRDYDGEIRVDGRPIAGIGGERGIVFQEHRLFPWLT VQQNVALGLVNEALGETDKAARIDEYIRLVGLHGFERAYPHQLSGGMAQRVAIARGLV ASPRLLLLDEPFSALDALTRQQLQEELLAIRRRTRITTLLVTHDVEEALYLADRVVVM EPRPGRIRRVVEVGLAHPRERGGFDFLRQREALLHELTADGEYVAPPPRRVENLPFEF IAC*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(210457..212073) /locus_tag="PA0185" /gene_synonym="atsB" CDS complement(210457..212073) /db_xref="GI:15595383" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248875" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MKNIDKTLSPAWSRPLPRLAPPPSAAFARRLGDGLLPWLLPLGL ALLWWVASHRHWMSAQVLPTPELVWQSARELLAGELWSELAISLRRLAWGLLAGVASG AALGAWLGFSPRAERLVFPTFSALAQIPTLAWIPLFMLFFGIGELLKLVVLVKAVVVP VTIHTLVGVRDAQPKLREAAAVLRLPPRLLVWRLILPAALPAFLTGLRLALAQGWTSL LAVELLASSEGIGYLMVQGRQLFMLDIVFVCILIIGLVGVGMDRAIQWLDRRLLHWPQ AATGEFRRRPPGRGWQRLQVWLPPLALLLLWQSASSAEWVDPAILASPLEVARATWSG ALDGSLPGALFDSLKRTLGGLLLGGGLGFLGGLLLGLWRPAERFFGPTFAALRQVAIF AWVPLLTAWFGLGEPAKLTFVAIAAFFPLLLATQRGIASLPPSLGEAARVLRLGPWRR LLRLVLPGAAPSVFAGLRLALIYAWLGTIGAEYFMPSDGGIGSLMIGAQQLFRMDLIG AGMLLVGLTGALLNALGQRIEARATRWRHA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 212340..213401 /locus_tag="PA0186" /gene_synonym="atsR" CDS 212340..213401 /db_xref="GI:15595384" /function="Transport of small molecules" /protein_id="NP_248876" /localization_and_confidence="Unknown, Class 3 (primary)" /product="probable binding protein component of ABC transporter" /translation="MKALTSSLLGLFAAPVLAGLLGAYVPLASAAPPKEIRIAVPDVS AGSSHSGGGVVDVLYTRQLLEKEFANDGIAVKWSFFKGAGPVVNEAFANGQVDFAYLG DLAAIIGKSGGLDSRLLAATARGVNHYLGVQPGSGIKTLEDLKGKRVGIFRGTASQLS FDNALASVGLSEKDLKVINLDFSAALSALAARQIDATWGLAGLFALRDRGLAEIPLST RDLNGAGTLQALLVGSGAFVDAHPDITERLLKVQLQAQDWLAREENRDAYIELVSKQA SYPVVILQSEYRGRKLGDALSPRLDADFLGRLDASIQAAKRFGLIRREFSAEQWAAPE LLEAAGKLAKAKAVAQAAE*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex [goid GO:0043190] [evidence IEA]; " gene 213819..214634 /locus_tag="PA0187" CDS 213819..214634 /db_xref="GI:15595385" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248877" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MNLDSKLFDATLDLERVKVSVRTLVKLSRQEQSAIIRTLNEFGF LLLRSEHGEDRQELLALKELFGRAAPHPRADADGIVPISNARYVSGYLGSTPLEHKLH TDGAFLDTPEQLCSLQCVRNAREGGETLLASAGLAFERLRRRMPTKHLGLLRGDALTI VRKHQSSTQPVFRLNGEALGIKFRQNDGAAEVVEHPVAVEAFAELVAALEDPACQLRI KLEPGEILVLDNTAVLHGRTAFCANELREMRRLNFDGHGRLRAELELGFKVGL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 214631..215512 /locus_tag="PA0188" CDS 214631..215512 /db_xref="GI:15595386" /function="Membrane proteins" /protein_id="NP_248878" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="VIAQFVAVVLPILICTGIGFAWSRSAGPVDTRALVFLVANVGFP CLLLSSLDRPGLSIGMVAGVFLATALAVLAFALLGLVALRLLRMPVRRYLPSIMLPNS GNMGIPIAYLAFGEEALVYAVAFSTLIQVGHATLGVWFASGDITPASILRNPMIYALA VALGLIALGWSLPPPLRDVTRLLGGITVPLMLVMLGLSLAGLRLHETWRPLLLSLVRV WGGFAVGYGIAAGLGMAAVAAGTFAIQCGMPTAVLTYLLAKRYDGPVNEVAGMVLITT LLVLLSTPLFIQLLPRA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(215550..216908) /locus_tag="PA0189" /gene_synonym="opdI" CDS complement(215550..216908) /db_xref="GI:15595387" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248879" /localization_and_confidence="Outer Membrane, Class 2 (primary); Outer Membrane, Class 3 (primary)" /product="probable porin" /translation="MQNLRRAVFAGLVAGTLSEGAAATAGDGGFVEDSELQFLARTYY FNRDYRDSPNNAGRNRFKPRSERNGYREEATQGLRLQFASGYTPGSLGFGLDAHAMLG LQLDSGGGRTGTGNLPVGADGHPDHRYGKVGGALRLRHGETRLKYGQTTTSAPVFAAS SNRTLAGMAYGLLLEDRSFDGLLLEGGRFTAASGPGESKVRGDISTVYGRLGAYPVRL DAVGFLGGQWQATERLQLSLYASRFDDIWQQAYFGASHRQPLGGERALRVDLDAYRTR DSGQSRFGRIDTLTSSLALGYEHGPQRITLAYQRVHGEQPFDYMAFGDGRSSASMVLA NSVGYSDFNGPGERSWQLRYDLDLGALGLPGLSLHALHARGRAGASASSAAESIYAGL YGRDGRHRENDLGFAYRVKAGPLAGLALRASQAWHRGNASYLDGDIDETRLVVDYSRS IW*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 217156..217881 /locus_tag="PA0190" CDS 217156..217881 /db_xref="GI:15595388" /function="Putative enzymes" /protein_id="NP_248880" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="probable acid phosphatase" /translation="MNNKTLCPSLLLCLSLLAPLSCLGETAAAPYPLAHPPRLADYLP PPPAADSAAAVADLGAVLEAQRLRTPEQVRRVRAHDQWEDNVFPFAGDLLGASFDKER LPLTRSFFNRAQENLVEVLMPAKKHFARPRPYEVTPKVKPVLPPPEGESYPSGHTMDS YFKASLLSMLVPEHHDAFFARAEEHAQSRVLAGVHFPSDLEGGQTAAAALVASLLADP AVAADFAAVREELRGALGLPKLQ*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(217905..218822) /locus_tag="PA0191" CDS complement(217905..218822) /db_xref="GI:15595389" /function="Transcriptional regulators" /protein_id="NP_248881" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MDLRQLRYFIALAEHRSFVRAADAMGITQPAFSRSIQGLEQELG CQLVDRGSKDLRPTPEGQVVLQHALSLVQGSANLIHEIAQLNKLDAGELRFGSGPAPA QQLVPDAVADFINRHPRVQISLDVDNWEKLSRALLREEIEFFVADIRDFEADPNFQTR PLTPRRGQFFCRPQHPLLGKDSLSTNDLFNYPLASTLIPPGIRKLLANLSGKIDFAAN IRCENMHALIRIVRQTDAIGIASDETLRPYLQRGELQPLQWRNLPQNLDSLSARCGII SRSGYRLSAAAKAMIETLVELDQAQHAAA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: positive regulation of transcription, DNA-dependent [goid GO:0045893] [evidence IEA]; " gene 219172..221544 /locus_tag="PA0192" CDS 219172..221544 /db_xref="GI:15595390" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248882" /localization_and_confidence="Outer Membrane, Class 2 (primary); Outer Membrane, Class 3 (primary)" /product="probable TonB-dependent receptor" /translation="MKHHYRLPLRRTPPGGSDYALALLLALGGALPASAADAPAPAEE APPLAGSAPAKADTALGKVTVTARRREEDSQKVPTPITVLGGETLEAQRISRVQDLQQ VLPSVNVAYIHARQSSVAVRGIGNNPASDGLEGSAGIYLDNVYLGRPGMAVFDLLDIE QLELLRGPQGTLFGKNTTAGVLNISTRAPTFTAERTVEVSGGQDGYFQGRGTVSGPLG ETLAGRLSAYRTRDDGYIKNIHDDNYLNGGERQGARGQLLFEPNEDFSLRWIADYNEE DSSNGSMVVYGGAERFWQRAALVGASPLRDPQRRKVNINGRQHVSVHQGGSSLEANWN LAGGYRLTSISAYRYWHFTPANDEQLNVSAINDTGVEVHDRQFSQEIRLASPTGGAFD YVVGAYAFRQNLGNKTFTSYGPLADLYLLGANLGALNDTYSKANGKIETDSFALFAQG TWHLTERLDFTAGLRGTYEEKNAKVERFAPLGGAAVGGVGAAVRNGQLGAYDSGDLSQ YNFAPSALLSLSYQFSDDLLGYASLSHGEKSGGVNLAVGSAPSAGADSLLVGPERAND AELGLKSTLFDRRLLLNANLFWTGIHGYQATTLYQAPGSTQLVQVLANAGSVRSRGLE FEATALPLRGLTLNFNGSYNDVTYLSFKDAPCPAEVSTRPGAPSSCDLTGQRVVGASK WIANLNGEYQWRLDDRFQPYVSASYAYRSAAEGTLDNSDLSKIDGYALVNLAAGLRSD LGDGQLDTSVWLKNAFDKDYYLSAFASINGSYTASVGQPRTLGVSLRYDF*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: outer membrane [goid GO:0019867] [evidence IEA]; " gene 221585..222487 /locus_tag="PA0193" CDS 221585..222487 /db_xref="GI:15595391" /function="Putative enzymes" /protein_id="NP_248883" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSNAAQALATPVRLDIRPVAGRIGAEIRGVTLSGELDAATVEAI QAALVRHKVIFFRDQSHLDDQTQEAFAHLLGEPVAHPTVPSREGTRFLLELDGAEGRR ANSWHTDVTFVEAYPKASILRSVVAPESGGDTVWANTASAYADLPAELRELADRLWAV HSNEYDYAGVKPSASVEQLENYRKVFTSTVYETEHPVVRVHPQSGERTLLLGHFVKRL KGLSQHDSAHLFAVLQGHVTRLENTVRWRWQAGDVAIWDNRATQHYAIDDYGDQPRVV RRVTLGGDVPVGIDGQRSRTIRKA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 222555..223454 /locus_tag="PA0194" CDS 222555..223454 /db_xref="GI:15595392" /function="Putative enzymes" /protein_id="NP_248884" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSQSATARQPEPEVAEAFRITPLEAPLGAEVRGLDARRPLAPEQ VLALKQALREHHILVFRQQHLDDEQYLRFATLFGSVFQPPADIPVLSSGGDGKVPDIV KVANTGDGELGNFALPAHIDHQWTPVPSSGSFLYALEVPSSGGETRFTNLARAYESLD EATRREIDGLRLINYNPFIRLREGGYGGGFATYRTPDIEPIQGSEHPLVRTHPESGRR VLFLSAHTEVEIPGYDPARGQALIGRLREHLARPELSYSHAWSVGDIVWWDNQAVLHA RNAFPASERRRLKRISLAGSRPF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 224101..225217 /locus_tag="PA0195" /name="pntAA" CDS 224101..225217 /db_xref="GI:15600764" /function="Energy metabolism; Transport of small molecules" /protein_id="NP_248885" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="putative NAD(P) transhydrogenase, subunit alpha part 1" /translation="VQIGVPLETHAGETRVSATPETVKKLIGQGHQVIVQSGAGVSAS QPDSAYEAAGATIGSAAEAFGADLVLKVVAPSAAELAQMKSGAVLVGMLNPFDNENIA RMAERGITAFALEAAPRTSRAQSLDVLSSQANIAGYKAVMLAANHYPRFMPMLMTAAG TVKAARVLILGAGVAGLQAIATAKRLGAVIEASDVRPAVKEQIESLGAKFVDVPYETD EERECAEGVGGYARPMPASWMERQAKAVHERAKQSDIVITTALIPGRKAPTLLHEATV AEMKPGSVVIDLAAAQGGNCPLTEADQVVVRHGVTIVGHSNLAALVPADASALYARNI LDFLKLTLNAEGFSVNLEDDIVAACLMCRDGQAVRKNG" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_process: oxidation reduction [goid GO:0055114] [evidence IEA]; " gene 225295..225603 /locus_tag="PA0195.1" /name="pntAB" CDS 225295..225603 /db_xref="GI:119167455" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248886" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="putative NAD(P) transhydrogenase, subunit alpha part 2" /translation="MDIISDGIYNLIIFVLAVYVGYHVVWNVTPALHTPLMAVTNAIS AIVIVGAMLAAALTVTPLGKAMGTLAVALAAVNVFGGFLVTRRMLEMFKKKAPKAGGH *" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: oxidation reduction [goid GO:0055114] [evidence IEA]; " gene 225603..227039 /locus_tag="PA0196" /name="pntB" CDS 225603..227039 /db_xref="GI:15595393" /function="Transport of small molecules; Energy metabolism" /protein_id="NP_248887" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="pyridine nucleotide transhydrogenase, beta subunit" /translation="MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIA VATTVGLVFKLGAEIATTGVGYIVVGLLVGGTAGSIMAKRVEMTKMPELVAFMHSMIG LAAVFIAIAAVVEPQSLGIVAHLGDTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSG KYKFRLFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFTGNLTAFAVMLALAFVLGVLI IIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAM NRSFFNVILGGFGAEADAGGPAGSKEQRPVKSGSADDASFLLTNADSVIIVPGYGLAV ARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINS EFGQTDVVLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLD NELFYLDKTMMVFGDAKKVIEDMVKAVE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_function: NAD(P)+ transhydrogenase (AB-specific) activity [goid GO:0008750] [evidence RCA]; " gene 227382..228194 /locus_tag="PA0197" /name="tonB2" CDS 227382..228194 /db_xref="GI:15595394" /function="Transport of small molecules" /protein_id="NP_248888" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="TonB2" /translation="MATPQPVDARTQPWRETPGGDLVALGRPVRQALHLVRHNPAQGR VLSRRETILLVLFALTLHGAVIHWLSQQRTPALPEVPPQVPPMTIEFTAPAPPVVEPP PPEPLPPVVEEPPPPVVDENAVKPPPPKPVPKPKPKPKPQPRPKPAPKAVEPAPPAPP QPAAPPAPPAPAAAPAPLTPPSANAGYLHNPAPEYPALAMRRGWEGTVLLRVHVLASG SPSEIQVQKSSGREALDQAAVKAVKRWSFVPAKRGDKAEDGWVSVPIDFKLN*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: energizer of outer membrane receptor-mediated transport activity [goid GO:0015570] [evidence IEA]; " gene 228223..228942 /locus_tag="PA0198" /name="exbB1" CDS 228223..228942 /db_xref="GI:15595395" /function="Transport of small molecules" /protein_id="NP_248889" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="transport protein ExbB" /translation="MSLLTTPLESVEGAVIWLLVGFSVVTWGLALVKGVQFARQKRQD RQFQKQFWSATSLDSAGEQAQDKQGAGARVAQAGFAAIQVQDNGQPDLAQSINHQDRL ERALRQQIQRERRSLESGLAVLASIGSTSPFIGLFGTVWGIMEALKGISAAGSASLET VAGPIGSALIATGVGIAVAVPAVLVYNYFLRRLKLTAADLDDFAHDFYSLAQKSAFRV IVHPSAARQAGNPSRNVKEAS*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_process: proton transport [goid GO:0015992] [evidence IEA]; " gene 228944..229345 /locus_tag="PA0199" /name="exbD1" CDS 228944..229345 /db_xref="GI:15595396" /function="Transport of small molecules" /protein_id="NP_248890" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="transport protein ExbD" /translation="MAFSTQDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNSIPI NLPKTESVAPPEQKDPLVVSIDGAGKLFVNKDEIQPELLESNLAAAKAKDAEVRVQLQ ADEGVNYGQVAKAMASIERAGITRLAVITAR*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: intrinsic to external side of plasma membrane, in periplasmic space [goid GO:0031237] [evidence IEA]; " gene complement(229526..229738) /locus_tag="PA0200" CDS complement(229526..229738) /db_xref="GI:15595397" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248891" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MAKKFPLHPSHPERICWGCDRYCSAESMGCGNGASRTQHPSELF GEDWAGEWEVEGTEDAKEQEAPARQA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 229954..230535 /locus_tag="PA0201" CDS 229954..230535 /db_xref="GI:15595398" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248892" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MHSERVRYVLVPGWYGSEDAHWQSHWQRALPNASRVEQQDWITP LRADWIAELDAEIRRQPGPVVLIAHSLGCVTVALWAAQAERRVRDQVRGALLVAPADV ERESCAEALRNFAPISREPLPFPSVLVGSDNDQACSPQRAMHLARAWGAETVILPEAG HINVKSGHGAWEAGYRHLFRLQYLIDSQARRRA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(230543..232000) /locus_tag="PA0202" CDS complement(230543..232000) /db_xref="GI:15595399" /function="Putative enzymes" /protein_id="NP_248893" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable amidase" /translation="MKPNPPINELVLLQAHQLAERIRLRQVSCREVMQAYLAHIERFN PRVNALVSLLPAERLLEEADARDGELARGEWRGWMHGLPHAIKDLSLTRGIRTTLGSP LYRDYIPERDGIMVERIRAAGAILIGKTNTPEFGLGSQTYNPLFGATACAYDERLSAG GSSGGAAAALALHLVPVADGSDMMGSLRNPAAFNNVIGFRPSQGRVPFDDSADLFFDQ LGYEGPMGRSVRDTALLLSVQAGADRRAPLSIAEPGARFAAPLERDFEGTRLGWLGDL DGYLPMQDGILQMCQRALGDFRSLGCEIEEANLGFAPERLWECWRTLRHWLVAGSLGG VHADPAKRALLKPEALWEVENGLRLGADAVFRASVIRSDWYRAIGRLFERYDYLLLPS AQVFPFAKETPWPRSIEGVAMDTYHRWMEVVVPGSLSGCPVANVQAGFNAEGLPMGLQ IIGPHQADFAVLQLAHAYERASRWFERQPSPLLAN*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [goid GO:0050567] [evidence IEA]; " gene complement(232066..233100) /locus_tag="PA0203" CDS complement(232066..233100) /db_xref="GI:15595400" /function="Transport of small molecules" /protein_id="NP_248894" /localization_and_confidence="Periplasmic, Class 2 (primary); Periplasmic, Class 3 (primary)" /product="probable binding protein component of ABC transporter" /translation="MHQRIASIGLGLTLALGGSAQAAGQLNVVSWSGYFSPQLLEKFE KESGIRVTVDSYDSNETLLAKLKQGGAGYDVAIPSQQFVPILVKEALLERFDPAAEPY YANLLDNLKKPAWDPEGAYSVPFIWGTTSVVLDGARYAGPADSYAVLYQPPEELRGRI NMFDSVSEVVDMASLYLGIPLCSADPKQMQRVLELLKAQKPFVKTYSSKAGSIRENLA AGEVDMSMFWGGSSMRARELKPSLKYLYPKEGVLAWVDNLVIPRGSRNPDNARRFIAF LAQPENAALTQNFLKHQSPVKGVEPYLDASLKDAPELHVPAGTRVVFSQTCGEDAIRL ADRLWTNLMR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(233123..233932) /locus_tag="PA0204" CDS complement(233123..233932) /db_xref="GI:15595401" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248895" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MIARLWKGSRHNVQDFPGFGAFSLLFYLYLYAPILVLVVYSFNA NQSATVWTGFSLDWYRAAFANQALRQAAGNSLLIAVCASAAATAIATLAALGTSRGAK FRGLRLSMGAIMLPLVLPEIVVGVATLALFSTVGLSLGYGNLIIAHTVFCIPFAYLPI RARLDDMDLSLEQAAADLYAGPWRTLRKVTLPLLAPGIFSGLMLAFIVSLDNFVISMM VSQAGTTTLPIFIFGLLRMGVTPDVNAVSTLILGVSVIFVSLSYLLGKPRA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(233929..234849) /locus_tag="PA0205" CDS complement(233929..234849) /db_xref="GI:15595402" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248896" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MHPIPSPGAALQRRQALRSFLGVTPALVAIGLFLVLPILIVAAY SLMEANPYGGVDRAFSGEAYVSLLFERQMDDSLAFADSYLTIALRSLGIAALTTLITL SLGFPVAVWLAMQPPRRRGLLIFLITVPFWANLLIRTYAWILLLRGSGVINNGLLGLG LVDHPLPLLYSDGAVLLGLVYTYAPFVVLPIYATLEKMDMRLLEAAQDLYAGRLRTLR KVVLPTARPGILAGAILTFVPCLGAMIAPELLGGGTRMMLGNLIFRQFADARNWPFGA ALSLVLMAAVMLILTVYAWRAERLARGMGR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(234875..235987) /locus_tag="PA0206" CDS complement(234875..235987) /db_xref="GI:15595403" /function="Transport of small molecules" /protein_id="NP_248897" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable ATP-binding component of ABC transporter" /translation="MSALHSLRTHAVSIRAVRKVYGDPESGPVALKRVDLDIRDNEFF TLLGPSGCGKTTLLRMIAGFEFPTEGEILLYGENIAARPPFERPVNTVFQHYALFPHM SIAENLAFGLESRPLGRSLGKAEIAERVREMLALVQMERFADRRPGQLSGGQQQRVAL ARALAPQPRVLLLDEPLSALDLKLRQAMREELKAIQAKTGITFIFVTHDQEEALTMSD RIAVLSEGQVQQVGPPEEIYERPGNRFVADFIGETNFIEAELLQRDGPLALYRGPGGE AFEAAARDGLAAGARVCLSIRPERLDLLAANTGGGLPCTVESQVYLGTDLQYRVRLAD GSLLTVRTPNGTARRFATGEAACLAVAKDSASVLLD*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 236218..237111 /locus_tag="PA0207" CDS 236218..237111 /db_xref="GI:15595404" /function="Transcriptional regulators" /protein_id="NP_248898" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MSIPRLPPLNAVRAFEAAARLGSYVAAAKALHVTQPAVGRHVRL LEDWLGARLFERTSRGVLLTPAGRQYYAAVSTALQQIAEAGGQLSGARWLRIMAVPAF SRRWLTSRLETLCAQRPGLKIALEPNPTFDHVEERSADLGIVYGLPGQYANPRALLIR PKVFPVCSPAYLAAAGPLESAEQLVAHKLIHVDDGEWWNLWFSAIGVDVEVRPAVLYL SNDHALARAEEGLGIALANEVLVRQELRSGALVRPLAAEAALECYQVLTPPGTPSADV EWFIGWLGEALREEFPDAVTS*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 237232..238896 /locus_tag="PA0208" /name="mdcA" CDS 237232..238896 /db_xref="GI:15595405" /function="Carbon compound catabolism" /protein_id="NP_248899" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="malonate decarboxylase alpha subunit" /translation="MTTPISPPPQWSRRRQEKQRRLERVRGLADGAVLPREGLVAALE ALIAPGDRVVLEGNNQKQADFLSRSLARVDPGKLHDLHMIMPSVGRPEHLDLFELGIA RKLDFSFSGPQSLRIGQLLEDGLLEIGAIHTYIELYARLVVDLIPNVALVAGFVADRE GNVYTGPSTEDTPALVEPTAFSDGIVIVQVNRIVDDPRDLPRVDIPASWVDFVVEADQ PFYIEPLFTRDPRHIKPVHVLMAMMAIRGIYQRHNVQSLNHGIGFNTAAIELILPTYG ESLGLKGKICRHWTLNPHPTLIPAIESGWVESVHCFGTELGMEGYIAQRPDVFFTGRD GSLRSNRMFCQLAGQYAVDLFIGATLQVDGDGHSSTVTRGRLAGFGGAPNMGHDPRGR RHSTPAWLDMRGEPEALLERGRKLVVQMVETFQDGGKPTFVERLDALEVARQTGMPLA PVMIYGDDVTHVLTEEGIAYLYKARSLEERQAMIAAVAGISPIGLRHDPRETQRMRRE GLIALPEDLGIRRTDASRELLAAKSIAELVEWSGGLYQPPARFRSW*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_function: decarboxylation-driven active transmembrane transporter activity [goid GO:0015451] [evidence IEA]; " gene 238896..239777 /locus_tag="PA0209" /gene_synonym="mdcB" CDS 238896..239777 /db_xref="GI:15595406" /function="Putative enzymes" /protein_id="NP_248900" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MNAIANLAATPGADLGECLADLAVDALIDEAELSPKPALVDRRG NGAHADLHLGLMQASALSLWPCFKEMADAAQRHGRIDARLRGVLGQLGRDGEAAMLRT TEGVNTHRGAIWALGLLVAAAALEPRRTQAGEVAARAGRIALLDDPAAAIGDSHGERV RRRYGVGGAREEARLCFPRAVRHGLPQLWRSREGGAGEQNARLDALLAIMSVLDDTCV LHRAGRVGLAAMQDGARAVLAAGGSASLAGRRRLCELDRRLLALNASPGGAADLLAAC LFLDRLPAVSGGWAGSL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: triphosphoribosyl-dephospho-CoA synthase activity [goid GO:0046917] [evidence IEA]; " gene 239779..240078 /locus_tag="PA0210" /name="mdcC" CDS 239779..240078 /db_xref="GI:15595407" /function="Carbon compound catabolism" /protein_id="NP_248901" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="malonate decarboxylase delta subunit" /translation="METLTFEFPAGAPARGRALAGCVGSGDLEVLLEPAAGGALSIQV VTSVNGSGPRWQQLFARVFAASTAPAASIRIHDFGATPGVVRLRLEQALEEAGHD*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_function: acyl carrier activity [goid GO:0000036] [evidence RCA]; GO_function: carboxy-lyase activity [goid GO:0016831] [evidence RCA]; " gene 240071..240934 /locus_tag="PA0211" /name="mdcD" CDS 240071..240934 /db_xref="GI:15595408" /function="Carbon compound catabolism" /protein_id="NP_248902" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="malonate decarboxylase beta subunit" /translation="MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSP WLERQGIVPQADDGVVVARGLLDGQPAVLAAIEGAFQGGSLGEVSGAKIAGALELAAE DNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQRYQPVVAVIAGPVGCF GGMSIAAGLCSYVLVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRFAS GLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRR LYQGLGQGDAT*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_function: carboxy-lyase activity [goid GO:0016831] [evidence RCA]; " gene 240931..241737 /locus_tag="PA0212" /name="mdcE" CDS 240931..241737 /db_xref="GI:15595409" /function="Carbon compound catabolism" /protein_id="NP_248903" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="malonate decarboxylase gamma subunit" /translation="MSQPFASRGLAWFQALAGSLAPRPGDPASLRVADAELDGYPVRF LAVVPDPDNPFPRARQGEVGLLEGWGLAAAVDEALEADREAPRKRALLAIVDVPSQAY GRREEALGIHQALAGAVDAYARARLAGHPLIGLLVGKAMSGAFLAHGYQANRLIALHD PGVMVHAMGKAAAARITLRSVEELEALAAKVPPMAYDIDSYASLGLLWRTLPVETVEV PSTADLVRVRTCLGEALADILGGPRDLGGRLGAANREASARVRRLLREQW*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_function: carboxy-lyase activity [goid GO:0016831] [evidence RCA]; " gene 241753..242445 /locus_tag="PA0213" /gene_synonym="mdcG" CDS 241753..242445 /db_xref="GI:15595410" /function="Carbon compound catabolism" /protein_id="NP_248904" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="VVIANSSQRGSSRRRLAPDPMRRRAGPEPHDLLLGMAPAHLPEN APAWVCAALKAGWPVVVRRAPADPARVAIGVRGLAREQRWAGWMPLAAITRRLRPEAL GQREPAMLRDLPAWRALRDLRAPLNALGLAWGVTGGAGFELASGVAVLHPDSDLDLLL RTPRPFPRDDALRLLQCFEQCPCRIDLQLQTPAGGVALREWAEGRPRVLAKGSEAPLL LEDPWRIAEVEA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: prosthetic group biosynthetic process [goid GO:0051191] [evidence IEA]; " gene 242442..243374 /locus_tag="PA0214" /gene_synonym="mdcH" CDS 242442..243374 /db_xref="GI:15595411" /function="Carbon compound catabolism" /protein_id="NP_248905" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable acyl transferase" /translation="MSVLFAYPGQGAQRPGMLAALPDEPPVRACLEQAADCLGQAPAE LESAEALRGTRAVQLCLLIAGVAASRLLETRGHRPGLVAGLSIGAYPAAVVAGALDFD DALRLVALRGELMQAAWPEGYGMSAILGLEQAQLEALILAVRREHPPLYLANVNAERQ LVVAGSEAALAALAERARAAGASAAKRLAVSVPSHCALLDEPAARLAEAFAGIRLHRP RVPYLSSSRARLVAEPAALADDLAGNMARRVEWLATLRSAYERGARLHLELPPGRVLS GLARPLFGCATPAFEGSRADTLDALLREEEKRTR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 243431..243835 /locus_tag="PA0215" /gene_synonym="madL" CDS 243431..243835 /db_xref="GI:15595412" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248906" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="malonate transporter MadL" /translation="MIIYGVALLSLCTLAGLFIGEILGVLLGVPANVGGVGIAMLLLI FVGSYLGKRGLLSAKTEQGVEFWSAVYIPIVVAMAAQQNVLGALSGGPAAILAGIAAV AVAFALVPLLDRFGRKKAEGARPLKPRTSVQG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: organic acid transport [goid GO:0015849] [evidence IEA]; " gene 243841..244605 /locus_tag="PA0216" /gene_synonym="madM" CDS 243841..244605 /db_xref="GI:15595413" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248907" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="malonate transporter MadM" /translation="MFESLNKVINGYGLISGFAIIGVTMAVSYWLSARLTRGRLHGSA IAIFLGLVLSYVGGVATGGQKGLVDVPLMSGIGLLGGAMLRDFAIVATAFGVNVEELR RAGVSGVVSLFLGVGSSFVAGVAVAMAFGYTDAVSLTTIGAGAVTYIVGPVTGAALGA SSEVMALSIAAGLVKAILVMVLTPFVAPYIGLNNPRTAVIFGGLMGTSSGVAGGLAAT DPKLVPYGCLTAAFYTAIGCLLGPSLLYFSVRGLVG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: organic acid transport [goid GO:0015849] [evidence IEA]; " gene complement(244690..245619) /locus_tag="PA0217" /gene_synonym="mdcR" CDS complement(244690..245619) /db_xref="GI:15595414" /function="Transcriptional regulators" /protein_id="NP_248908" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MLIDEEITLKKLETFLAFMRTGNLARAAAELGTSNVSVHRAIHS LESALRCPLFKHEGRNLTPLESAYVLEERAQKLVQEVLDTVRLTREAAGFSAERFKLG ALYSLTVKTVPQLIMGLKLRRSALNIDLILGSNVDLFYQLKNMELDAILVSLNDSVSD PDCEHLPLFSDDIFLAVPVDSPYARLAEIDLSTLRDTPFVTLTQGFATHQDGTRVFQQ AGFEPQIAMQVNDIFTLLSMVSSGVGHALLPKRIEAVYENRVRLIPLQPRYRLQQHIG VVFLKAKERDPNLLALLAECRMYSLRLEQEAAG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(245948..246868) /locus_tag="PA0218" CDS complement(245948..246868) /db_xref="GI:15595415" /function="Transcriptional regulators" /protein_id="NP_248909" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="VASYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEE SFGVQLFIRHHAQGVSLTPAGARFYRKAQELLRMAHEFEQNALADNDVIAGQIDIGCF ETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIE TEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLT PNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECTYDGKKVVMVDLAEPVSTSGLAAA WLKRAQLTKPARLFVDYCREQLGKLAERRH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 247219..248709 /locus_tag="PA0219" CDS 247219..248709 /db_xref="GI:15595416" /function="Putative enzymes" /protein_id="NP_248910" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable aldehyde dehydrogenase" /translation="VFELSDWQRRAATQRFIDQALIGGRQRPAASGATFDAIDPASNR LLARVAACDAADVDAAVAAARRAFDEGPWARLAPVERKRVLLRLAELMLAHREELALL DSLNMGKPVMDAWNIDVPGAAHVFAWYAESLDKLYDQVAPTAQQTLATITRVPLGVIG AVVPWNFPLDMAAWKLAPALAAGNSVVLKPAEQSPFSALRLAELALEAGVPEGVLNVV PGLGEQAGKALGLHPEVDALVFTGSTEVGKYFMQYSAQSNLKQVWLECGGKSPNLVFA DCRDLDLAAEKAAFGIFFNQGEVCSANSRLLVERSIHDEFVERLLAKARDWQPGDPLD PASRAGAIVDRRQTAGILAAIERAQGEGATLLGGGRQLTINGSDNFIEPTLFGDVRPD MQLAREEIFGPVLAISAFDSEDEAIRLANDSRYGLAASLWSDDLHRAHRVARRLNAGT VSVNTVDALDVAVPFGGGKQSGFGRDLSLHSFDKYTQLKTTWFQLR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: betaine-aldehyde dehydrogenase activity [goid GO:0008802] [evidence IEA]; " gene 248767..250200 /locus_tag="PA0220" CDS 248767..250200 /db_xref="GI:15595417" /function="Transport of small molecules" /protein_id="NP_248911" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="amino acid APC family transporter" /translation="MNDTPNVREPALRRVLGLGPLLAVAIGLVVSQGVMVLMLQGAGT AGLGFIVPLGVAYLLALSYAFSFSELALMIPRAGSLSSYTEVAIGHFPAILATFSGYV VVAMFALSAELLLLDLIIGKVYPGALPPMLVAYGVLGLFTLLNLLGIDIFARLQSALA LLMMIVLLVLGLGAVSSDHASAQTALASGWNPLGVSALALTAMAVWGFVGAEFVCPLV EETRRPERNIPRSMILGLSIIFLTIALYCFGALLCIPQAELAGDPLPHFLFANRVFGE YGQLFLVIAAITATCSTLNSSLAAIPRMLYGMAQNGQAFPQFKQLSRRARTPWVAVLF VAAITGLPILILGQDPDSINLLLLAAALAWLLAYIIAHVDVLALRRRYPHIARPFRTP FYPLPQLFGIAGMIYAVVHVSPTPEMTGRIFASAGVVLGVVSLVAVVWIKGVMRKPLF VPEPLETAGETAQGKSVALDPLQSPSA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 250231..251613 /locus_tag="PA0221" CDS 250231..251613 /db_xref="GI:15595418" /function="Putative enzymes" /protein_id="NP_248912" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable aminotransferase" /translation="MTAQLNPQRDTRDYQQLDAAHHIHAFLDQKALNREGPRVMVRGD GLQLWDNDGKRYLDGMSGLWCTNLGYGRQDLAAAASRQLEQLPYYNMFFHTTHPAVVE LSEMLFSLLPDHYSHAIYTNSGSEANEVLIRTVRRYWQILGKPQKKIMIGRWNGYHGS TLGSTALGGMKFMHEMGGMLPDFAHIDEPYWYANGGELSPAEFGRRAALQLEEKILEL GAENVAAFVAEPFQGAGGMIFPPQSYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFA HEHFGFQPDTLSIAKGLTSGYIPMGGLVLGKRIAEVLVEQGGVFAHGLTYSGHPVAAA VAIANLKALRDEGVVTRVREETGPYLQRCLREVFGDHPLVGEVQGAGFVAALQFAEDK VTRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDELIDKTRIAV DRTAREIGVL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 251777..252835 /locus_tag="PA0222" CDS 251777..252835 /db_xref="GI:15595419" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248913" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKA AQEQAYFKPFERSGGGQVVAGEYNGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEG LFERLDPARFGDPAQFVPGTFSECGVATYVWSMVMAYDSTKLARAPQSWADFWNVREF PGKRGLRKGAKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNIQWWEAG AQPPQWLAAGDVVMSAAYNGRIAAAQKEGVKLAIVWPGSLYDPEYWAVVKGTPNKALA EKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQEALPTAPANLEGARAVDAEF WVDHGEELEQRFNAWAAR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(252913..253794) /locus_tag="PA0223" CDS complement(252913..253794) /db_xref="GI:15595420" /function="Cell wall / LPS / capsule; Amino acid biosynthesis and metabolism" /protein_id="NP_248914" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable dihydrodipicolinate synthetase" /translation="MSASIHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVHAIAP LGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEA VMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDN VTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNPLALEAFVAGAKGWCSAAPNLIPTLN GQLYQAVLDGDLEKARALFYRQLPLLDFILRRGLPTTIKAGLGLSGLEVGAPRLPVQA LDTEGCRYLQGLLEELR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: lysine biosynthetic process via diaminopimelate [goid GO:0009089] [evidence IEA]; " gene complement(253854..254636) /locus_tag="PA0224" CDS complement(253854..254636) /db_xref="GI:15595421" /function="Putative enzymes" /protein_id="NP_248915" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable aldolase" /translation="MATTLELPKDQLIQHALKQMKSSLGDNTWTDRQKLALTCRILFE AGHDSGLAGQITSRGPEAGTYYTQQLGLGFDEISAGNLLLVDEDLNVLHGHGMANPAN RFHSWVYRARPDVNCIIHTHPLHIAALSTLEVPLQVSHMDLCPLYDDCAFLKDWPGVP VGNEEGEIISAALGDKRAILLSHHGLLATGASIEEACVIAVLLERAAKMQLLAMAAGE IKPIPPALAREAHDWISTPKRHGAAFNYYARRCLPRNSDCLS*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: L-fucose catabolic process [goid GO:0042355] [evidence IEA]; " gene 254791..255330 /locus_tag="PA0225" CDS 254791..255330 /db_xref="GI:15595422" /function="Transcriptional regulators" /protein_id="NP_248916" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MSMRLKLLRKKLGVTLETLAEKTGLTKSYLSKVERGLNTPSIAA ALKLAKALNVQVEELFSEESDGVDGYSIVRRDQRKSLSSGDDGPAYASLAQQIGARAL LPFIVHPPRDFSHSTFKEHLGEEFIFVHEGQVEVDFMNQRIILERGDALHFNAQKPHR IRSLGETQAELLVVIHSDE*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 255481..256332 /locus_tag="PA0226" CDS 255481..256332 /db_xref="GI:15595423" /function="Carbon compound catabolism" /protein_id="NP_248917" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable CoA transferase, subunit A" /translation="MAEILSLREAVRRFVHDGDSVALEGFTHLIPTAAGHELIRQGRK DLTLIRMTPDLVYDLLIGAGCAKKLVFSWGGNPGVGSLHRLRDAVEKGWPQPLEIEEH SHADLANAYVAGASGLPFAVLRAYAGSDLPKVNPLIRSVTCPFTGEVLAAVPSVRPDV SVIHAQKADRKGNVLLWGILGVQKEAALAAKRCIVTVEEIVDELDAPMNACVLPSWAL SAVCLVPGGAHPSYAHGYYERDNRFYQDWDPIARDRESFTAWIDEYIRGTEDFGAFQA KLAEGKR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 256329..257111 /locus_tag="PA0227" /gene_synonym="pcaJ" CDS 256329..257111 /db_xref="GI:15595424" /function="Carbon compound catabolism" /protein_id="NP_248918" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable CoA transferase, subunit B" /translation="MSSYSTNEMMTVAAARRLHNGAVCFVGIGLPSKAANLARLTSSP DVVLIYESGPIGAKPSVLPLSIGDGELAETADTVVPTGEIFRYWLQGGRIDVGFLGAA QVDRFGNINTTVIGDYRQPKVRLPGAGGAPEIAGSAKEVLIILKQSHRTFVDKLAFVT SVGHGEGGDSRQRLGLPGKGPVAIITDLCIMEPEAGSNEFVVTSLHPGVTREQVVEAT GWAIRFAERVAETPAPSEVELAALRDLEARTAAAHGQKGSDE*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 257108..258313 /locus_tag="PA0228" /name="pcaF" CDS 257108..258313 /db_xref="GI:15595425" /function="Fatty acid and phospholipid metabolism; Carbon compound catabolism" /protein_id="NP_248919" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="beta-ketoadipyl CoA thiolase PcaF" /translation="MSREVFICDAVRTPIGRFGGSLSAVRADDLAAVPLKALVERNPG VDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAF RAIACGEMELAIAGGVESMSRAPYVMGKADSAFGRGQKIEDTTIGWRFVNPLMKEQYG IDPMPQTADNVADDYRVSRADQDAFALRSQQRAGRAQEAGFFAEEIVPVTIRGRKGDT LVEHDEHPRPDTTLEALARLKPVNGPEKTVTAGNASGVNDGAAALVLASAEAVEKHGL TPRARVLGMASAGVAPRIMGIGPVPAVRKLLRRLDLAIDAFDVIELNEAFASQGLACL RELGVADDSEKVNPNGGAIALGHPLGMSGARLVLTALHQLEKSGGRRGLATMCVGVGQ GLALAIERV*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: cellular lipid metabolic process [goid GO:0044255] [evidence ISS]; " gene 258463..259761 /locus_tag="PA0229" /gene_synonym="kgtP" /name="pcaT" CDS 258463..259761 /function="Membrane proteins; Transport of small molecules" /product_synonym="alpha-ketoglutarate permease" /protein_id="NP_248920" /note="GO_component: membrane [goid GO:0016020] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_function: solute:hydrogen symporter activity [goid GO:0015295] [evidence IEA]; " /db_xref="GI:15595426" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="dicarboxylic acid transporter PcaT" /translation="MTAPVHQYSNEERRKRIFAIVGASSGNLVEWFDFYVYAFCAIYF APAFFPSDNPTVQLLNTAGVFAAGFLMRPIGGWMFGRIADKHGRKTAMLISVVMMCAG SLAIACMPTYASIGTLAPALLLLARMFQGLSVGGEYGTSATYMSEVALKGQRGFFASF QYVTLIGGQLLAVLVVVILQQLLSEDELRAWGWRIPFVIGAITAVIALWLRRSLNETA SKSTLERKESGTFAELFKHKRAFFTVLGFTAGGSLIFYTFTTYMQKYLVNTAGMSAKT ASAVMTFALLAYMLMQPLFGMLSDRIGRKTSMLWFGTLGTLCTLPILLALKTVSSPYM AFFLIILALAIVSLYTSISGLIKAEMFPPEVRALGVGVSYAVGNAIFGGSAEYVALGL KSVGMENVFYWYVSAMCLLALLVCVSLPDLRKVSYLNDEP*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 259784..261163 /locus_tag="PA0230" /name="pcaB" CDS 259784..261163 /db_xref="GI:15595427" /function="Carbon compound catabolism" /protein_id="NP_248921" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="3-carboxy-cis,cis-muconate cycloisomerase" /translation="MSDVPANQLFDAYFMAAPMRAVFSDRGRLQGMLDFEAALARAEA RTGVVPATAVAPIEAACRAELYDPLALAEAVATAGNSAIPLVKALGRQVAAGDAEAER YVHLGATSQDAMDSGLVLQLRRALALLEQDLQRLAEVLADQAERHADTPLAGRTWLQH ATPVTLGMKLAGLLGALTRHRQRLRELRPRLLVLQFGGASGTLAALGEQALPVAAALA EELGLALPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDVSLLMQTEAGEVFEPAGAG RGGSSTMPHKRNPVSSAVLIAAATRAPGLVSTLFAAMPQEHERSLGLWHAEWETLPEL CCLVAGALQQAIGLLEGLEVDAQRMRRNLGLTHGLVLAEAVSIALARRIGREAAHHLV EQCCRRAVEQRRELRAVLGEEARVSAELSGDELDRLLDPAHYLGQARAWVERALAEHH ALGFEPHPA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: catechol metabolic process [goid GO:0009712] [evidence RCA]; GO_function: 3-carboxymuconate cycloisomerase type II activity [goid GO:0018842] [evidence RCA]; GO_function: 3-carboxy-cis,cis-muconate cycloisomerase activity [goid GO:0047472] [evidence IEA]; " gene 261179..261970 /locus_tag="PA0231" /name="pcaD" CDS 261179..261970 /db_xref="GI:15595428" /function="Carbon compound catabolism" /protein_id="NP_248922" /localization_and_confidence="Unknown, Class 3 (primary)" /product="beta-ketoadipate enol-lactone hydrolase" /translation="VPTVRLADGDLNYSLEGPAGAPVLLLSNSLGTDLGMWDTQIPAL TAHFRVLRYDTRGHGASLVTPGPYAIGQLGADVLALLDALELPRVHFCGLSMGGLIGQ WLGIHAGERLGRLVLCNTAAKIASDEVWNTRIDTVLKGGEQAMRDLRDASVARWFTAG FAEREPAQVERIVAMLAATSPQGYAANCAAVRDADFREQLGLVQAPTLIVAGSHDAVT TPDNARFMQARIADAQLVEFAAAHLSNVEAGDAFSRRLVDFLLSA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: catechol catabolic process [goid GO:0019614] [evidence RCA]; GO_function: hydrolase activity, acting on ester bonds [goid GO:0016788] [evidence RCA]; GO_function: 3-oxoadipate enol-lactonase activity [goid GO:0047570] [evidence IEA]; " gene 261981..262382 /locus_tag="PA0232" /name="pcaC" CDS 261981..262382 /db_xref="GI:15595429" /function="Carbon compound catabolism" /protein_id="NP_248923" /localization_and_confidence="Unknown, Class 3 (primary)" /product="gamma-carboxymuconolactone decarboxylase" /translation="MDEKQRYEAGMQVRRAVLGAAHVERSLANLTPFNEEFQEMITRH AWGDIWTRPGLPRHTRSLVTIAMLIGMNRNEELKLHLRAAKNNGVSRDEIKEVIMQSA IYCGIPAANATFHLAESVWDELGVESQQASR*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: protocatechuate catabolic process [goid GO:0019619] [evidence RCA]; GO_function: carboxy-lyase activity [goid GO:0016831] [evidence RCA]; GO_function: 4-carboxymuconolactone decarboxylase activity [goid GO:0047575] [evidence IEA]; " gene 262557..263498 /locus_tag="PA0233" CDS 262557..263498 /db_xref="GI:15595430" /function="Transcriptional regulators" /protein_id="NP_248924" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MSRKLHIHAPAIHYFDMVRRCHSIREAARRLNVASSAVNRQILK LEDEIGAPLFDRLPGGLRLTGAGEIFARHVTVVLQDMERVRSELDALQGLRTGHVEIA TIEAVTSDLLPCVLKAMRERYPDITVGVTLLGSQAIPEAVSSGAVDLGLAFALPRSAD LQQVSVGHFRLGAIVSPQHPLARHQAIAFADCVEHGLIMAKSELSIHHLLAPLQRRLR EPRRAVLESSSLELSRQLARRGLGVAFQTRLGIEADIAQGELRFLPLKDNGGIHSDLG LYVRTGRYLPVAVDALARQIAEEVRLREREEARLNEA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: positive regulation of transcription, DNA-dependent [goid GO:0045893] [evidence IEA]; " gene 263689..264522 /locus_tag="PA0234" CDS 263689..264522 /db_xref="GI:15595431" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248925" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MKKMMQGAAALIALVGAGESMALEWMSNSVGFRYGQQFTNPNNP DKFAKRIYSFTHADGYRYGSNFFNLDVFLSDNRDPRKGTDHGGSEVYAVYRHQLYASR VFDRPLGTGLVKDYAFTLGFDASRNNNLASAKKRALVFGPTLKFNGPGVLDLSLLYYR EKNHFGVPGARHPDHTFDTTYMLNLTWMRPFKVGNHAAKFQGFVNYVGDKGEDYNDKH TAAETLVRTALMVAALPGDKRQPNLWLGVGYEYWHNKFGVDGGTGSRTSTPTLNMEFT F*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(264964..266310) /locus_tag="PA0235" /name="pcaK" CDS complement(264964..266310) /db_xref="GI:15595432" /function="Membrane proteins; Carbon compound catabolism; Transport of small molecules" /protein_id="NP_248926" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="4-hydroxybenzoate transporter PcaK" /translation="MNSPSLPAVERLDVQAFINAQPLSPYQWRIVLLCFLIVFLDGLD TAAMGFIAPALTQDWGIDRASLGPVMSAALIGMVFGALGSGPLADRYGRKLVLVAAVF LFGLFSLASAYSTNVEQLLALRFLTGLGLGAAMPNATTLLSEYTPERLKSLLVTSMFC GFNLGMACGGFVSAKLIPLFGWHSLLLLGGLLPLVLAVVLLFRLPESARYLVVRNRGS ERVRQVLAPIAPAQVALARSFHVPEQQTVQARNVFAVIFSGTYSAGTLLLWLTYFMGL VIVYLLTSWLPTLMRDSGASLEQAAFIGALFQFGGVLSAVAVGWAMDRFNPHKVIGLF YLLAGVFAWCVGQSLGQVTLLATLVLLAGMCINGAQSAMPSLAARFYPTQGRATGVSW MLGIGRFGAILGAWIGATLLGLGWNFEQVLTALVLPAALATAAVLLKGLVSHADAG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_component: membrane [goid GO:0016020] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_process: aromatic compound catabolic process [goid GO:0019439] [evidence ISS]; GO_function: xenobiotic transporter activity [goid GO:0042910] [evidence IEA]; " gene 266616..267395 /locus_tag="PA0236" CDS 266616..267395 /db_xref="GI:15595433" /function="Transcriptional regulators" /protein_id="NP_248927" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MAGSLIERALGLLELLASDARGLPLQQLADRLDIPKSAAHRMLA ELIRLGYVRQDDDTSRYRLSTRLAALGFRFLASSGVVDLVQPVLDGLARETGELVRLG VIEGDRQTWIAKSQGATSGLRYDPDMGREAPLFYTASGHAWLASLSDKAALALVERQG VGAARDFGPNAPRSRSELLRYLKRAREHGYAWQIECSAPGMAAMAALVRHPEDGRALG VLSVAGPSARFGEARMHELAPLLLAAAQDLSHASQASELFR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 267638..268681 /locus_tag="PA0237" CDS 267638..268681 /db_xref="GI:15595434" /function="Putative enzymes" /protein_id="NP_248928" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="probable oxidoreductase" /translation="LDAPLRIALIGAGNMGRQHYHRLQRIAGARLCAVADPQGQAFAA DTGVPWFGDHRRLLEEARPQAAIVANPNNLHVATALDCLAAGVPLLLEKPVGVQLDEV SELVAVARRSGVPLLVGHHRRHNPLVVRARQLIAEGALGRLLSVTALWQLKKPDSYFE VAWRREPGAGMLLTNLIHDLDLLRHLCGEVREVQALAGNAIRGLPNEDNIALLLRFAN GALGSLTGCDAAAAPWSWELAAGENPVYPRQAEQPCYLLAGTEGALSLPQLRRWRYAE ARQGWHDPLAASEEAVATGDPLQRQLEHFVRVARGEEAPLMDATDAARTLALVEAVRE AARSGRACAPASF*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 268704..269519 /locus_tag="PA0238" CDS 268704..269519 /db_xref="GI:15595435" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248929" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MESRILSLAALTVLELSPPDMVEAAARAGYSHVGLRLVPATVEE HHYPLLADAGLRRRTLARLRDSGVRTLDVEILRLRPDTRVGEFAAVLEVGAEFGARYV LVAGNDDDERRSADNFAALCDLARPLGLDPHLEFMPWTGIRDLRQAARVVEAAARDNA GLLLDAFHFDRSASSLEDLRAIPPARLGYAQLCDVVGPRPTSMDEILRQAREERRFPG DGGLDLLALLRALPENLPLSLEVPALDLLARGVDGAERARLAIERTRALLARL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 269669..270547 /locus_tag="PA0239" CDS 269669..270547 /db_xref="GI:15595436" /function="Membrane proteins" /protein_id="NP_248930" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MNASTSPLPASDQTLRGILLICAAVFLFASHDGLSKFLSGFYPI VMVVWARYLVHTLLMVAVFVPRNGLAVIRSRRPLMQLARALCLIGTSLFFTTGLRYLP LAEATAVNFLAPLLVTALSVPLLKEKVSLGQWLAVLTGFIGVLFIVRPGGALFTPAAL FPLGSALCFGLYQLLTRMLANSDSPTTSNFLAGIFNTLIMSLLVPFFWQTPSLLHGLM MIALGGCGMGGHLLLTQAFRHAPPATLAPFSYGQIIFAGLLGLLVFGHVPDAWALLGI LVICASGLVVAWRRGR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(270573..271838) /locus_tag="PA0240" /gene_synonym="opdF" CDS complement(270573..271838) /db_xref="GI:15595437" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248931" /localization_and_confidence="Outer Membrane, Class 2 (primary); Outer Membrane, Class 3 (primary)" /product="probable porin" /translation="MSHPSHVRALCASLCLGAGLPVHAGHVHAGQGFLEDAKASLTAR NFHLHRNFVGDASQGKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGGKGTA GTQLLPIHDDGRPADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFR GGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGE RSLLGLWNAELKDIYRQQYLQLQHSQPLGDWLLGANLGGFRGRDAGSARAGKLDNRTV SALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRY DFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRW RNSSQRRDWGSNTRFDENRLIVSYPLSLL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(271904..273229) /locus_tag="PA0241" CDS complement(271904..273229) /function="Membrane proteins; Transport of small molecules" /product_synonym="probable MFS transporter" /protein_id="NP_248932" /db_xref="GI:15595438" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="probable major facilitator superfamily (MFS) transporter" /translation="MIHSSSSRLLAADAPRESRGGRIRNAFAVGRTRWGMLALVFFAT TLNYIDRAALGVMQPILAEKMSWTAMDYANINFWFQVGYAIGFILQGRFIDKVGVKRA FFLAVLLWSLATGAHGLATSAAGFMVCRFILGLTEAANYPACVKTTRLWFPAGERAVA TGIFNAGTNVGAMVTPALLPLILGVWGWQAAFLCMSALGLVWLVFWWRNYYNPEEHPR VKQSELEYIQQQEEPPATRVPFSQILRRRGTWAFALAYSITAPVFWFYLYWLPPFLNQ QYGLGISVTQMGIPLILIWLTADFGSVGGGILSSWLIGRGMPAIRARLLSMLLFACTI VGVVFAANASGLWIAVLAIALAVGAHQAWTANIWSLVMDYTPKHLMSTVFGFGGMCAA LGGMFMTQIVGGVLTATNNNYAVLFTMIPAMYFIALTWLYFMAPRRIEA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 273775..275679 /locus_tag="PA0242" CDS 273775..275679 /db_xref="GI:15595439" /function="Putative enzymes" /protein_id="NP_248933" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MQRSIATVSLSGTLPEKLEAIAAAGFDGVEIFENDLLHYDGSPR DVRRLCADLGLEILLFQPFRDFEGCRRERLGRNLERAERKFDLMQELGTDLVLVCSNV AADALGEPALLADDLRQLAERAAVRGLRIGYEALAWGRQVNTWEQAWDLVRRADQANL GLILDSFHTLSLDGDPRGIADLPGEKIFFVQMADAPLLAMDVLEWSRHFRCFPGQGGF DLAGFLAPVVASGYRGPLSLEVFNDGFRAAPTRANAVDGLRSLLYLEEKTREHLQRQT PHVAVDELFAPPPASLCDGIEFLEFAVDETLGARLGQWLQRLGFARAGEHRSKNVSLL RQGDINLVLNAEPYSFAHGFFEAHGPSLCATALCVRDAGQALERARAYGGQPYRGLLG PNEREIPAVRALDGSLLYLVERHTEGRSIYDSDFVTNDADTSGLGLRRVDHVALALPA EGLDSWVLFYKSLFDFGADDEVVLPDPYGLVTSRAVRSPCGSVRLPLNISEDRNTAIA RSLSSYRGSGVHHIAFDCADIFAAVAQAKEAGVALLEIPLNYYDDLAARFDFDDEFLS ELAYYNVLYDRDAQGGELFHVFTEPFEERFFFEILQRRHGYAGYGAANVPVRLAAMAQ ARRGVRRVKL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: tyrosine catabolic process [goid GO:0006572] [evidence IEA]; " gene 275772..276440 /locus_tag="PA0243" CDS 275772..276440 /db_xref="GI:15595440" /function="Transcriptional regulators" /protein_id="NP_248934" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MSKPDPAVVEESAPRGKGRKNNPEKTRQDILRAAIDEFVAQGLS GARVDAIAERTHTSKRMIYYYFGSKEQLYQAVLEKLYSDIRGIEGTLRLGALPPAKAM EKLVEFSFDYHDRHVDFVRIISIENIHKGEHIASSELVQSVNSSIVQSIAEILRRGEA EGVFRAGLEALDVHMLISSFCFYRVSNRYTVSRIFRTDLHDAEVRQRHRRMIGEAVLR YIRA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(276480..277334) /locus_tag="PA0244" CDS complement(276480..277334) /db_xref="GI:15595441" /function="Putative enzymes" /protein_id="NP_248935" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSAPRSVLAGLIGAGIQASRTPALHEREGDAQGIRYLYRLIDLD PLGKSADDLEFLLAAASDLGFTGLNVTFPCKQAIIPLLDDLSAEARGIGAVNTVVLRD GRRIGHNTDCLGFAEGFRRGLADAPRQRVVQMGAGGAGAAVAHALLAEGVERLVLFDV DPARAQALADNLNQHFGAPRALAGSDLAGALGDAQGLVNTTPVGMAKLPGMPVPAELL RADLWVAEVIYFPLETELLRQARALGCRTLDGGTMAVFQAVKAFELFSGVTADAARMQ AHFASLGD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: chorismate biosynthetic process [goid GO:0009423] [evidence IEA]; " gene complement(277331..277777) /locus_tag="PA0245" /gene_synonym="aroD2" /name="aroQ2" CDS complement(277331..277777) /function="Amino acid biosynthesis and metabolism" /product_synonym="dehydroquinase" /protein_id="NP_248936" /note="GO_function: fumarylacetoacetase activity [goid GO:0004334] [evidence ISS]; GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: L-phenylalanine biosynthetic process [goid GO:0009094] [evidence ISS]; GO_process: tyrosine biosynthetic process [goid GO:0006571] [evidence ISS]; GO_process: tryptophan biosynthetic process [goid GO:0000162] [evidence ISS]; GO_process: chorismate biosynthetic process [goid GO:0009423] [evidence IEA]; " /db_xref="GI:15595442" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="3-dehydroquinate dehydratase" /translation="MTRTVLVLNGPNLNLLGTREPQTYGRRTLGEIADECAAFAETRG FAVDFRQTNQEGQLLDWIHQARGRVAGIVINPAAWTHTSVALRDALAAVELPVVEVHL SNVHQREAFRHHSYVSPVALGVICGFGSLGYRLALEHFAERFEAAA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(277894..279399) /locus_tag="PA0246" CDS complement(277894..279399) /function="Membrane proteins; Transport of small molecules" /product_synonym="probable MFS transporter" /protein_id="NP_248937" /note="GO_process: response to drug [goid GO:0042493] [evidence IEA]; " /db_xref="GI:15595443" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable major facilitator superfamily (MFS) transporter" /translation="LSDLAQNPPAVRTVLAGLMLSIFLSALDQTIVAVSLPAISADYA DLDLLAWVISAYMVAMTVSMPIYGKLGDLYGRRRLMLFAIVVFTAASLLCGLAQSMGQ LVLARVLQGIGAGGLMAVSQAIIGDIVPPRERGRYQGYFSSMYAIASVAGPVLGGLLT EYLSWHWVFWINLPIGLLALAISRRTLVGLPVPRRQPVIDYLGIVLMVVGLTALLLAI TQIGQGAAWSDPALLGLFALAALALLLFVAQERRFREPLVPMQLFAVRAATLSWLVAF FASFQAISLTVLVPLRYQSVTGAGADSAALHLLPLVMGLPLGAYCCGRLTASLGRYKP LILLGAVLLPCGIAGLALVPVGDHWLSGLCMLLTGIAIGTQFPTSLVAAQNAVEQRHI GVATSNATLFRSLGGAVGVALMSAILLALLKHLRIGGGLDQGFSESALLSSLDAASGP ARVILQHVLADAFKVLFLVNAAVALLGLAVASALPDMTLRGRGATQPTAGE*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(279574..280758) /locus_tag="PA0247" /name="pobA" CDS complement(279574..280758) /db_xref="GI:15595444" /function="Carbon compound catabolism" /protein_id="NP_248938" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="p-hydroxybenzoate hydroxylase" /translation="MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIR AGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQ TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDG FHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATR SRYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPM QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLR RIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLPYEE IE*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: cellular catabolic process [goid GO:0044248] [evidence IDA]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence IDA]; GO_function: aromatic-amino-acid transaminase activity [goid GO:0008793] [evidence IDA]; GO_process: benzoate metabolic process [goid GO:0018874] [evidence IEA]; " gene 280936..281802 /locus_tag="PA0248" /gene_synonym="pobR" CDS 280936..281802 /db_xref="GI:15595445" /function="Transcriptional regulators" /protein_id="NP_248939" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MTDSTRDVPVFKLYGAPLEWPTPDLLHCESIPARSRLHDWEIKP HRHADLAQLLYVRKGWAQLQVEGEPTRVEQPSIQFVPPLCIHGFQFSERIDGYVLTLA APLLARLQAHLGAQRQALEAPGLYPVGADRRYIDTLFDAIDGEYAGAAPARELLLQSL IGVLAVWLGRQVMVRRAEARPGRGQEYLSAFSQLVERHFREHLGIDEYARRLGISPAH LNGVARRLSGQTALGIVHQRLLLEAKRDLVYTAMTVNEIADRLGFSEPAYFTRFFKRL SGVSPSVFRKGD*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IEA]; " gene complement(281799..282245) /locus_tag="PA0249" CDS complement(281799..282245) /db_xref="GI:15595446" /function="Putative enzymes" /protein_id="NP_248940" /localization_and_confidence="Unknown, Class 3 (primary)" /product="probable acetyltransferase" /translation="MSSPPKIRRYIPADRDATLAIWLEASRVGHGFLGEAELQKQKAL VRDHYLDASETWLALDGDTPLGFIGLLDAFIGGLFVAPTAHGRGIGRQLVEHAATLKG ALEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQLRREH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: ribosome biogenesis [goid GO:0042254] [evidence IEA]; " gene complement(282323..282757) /locus_tag="PA0250" CDS complement(282323..282757) /db_xref="GI:15595447" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248941" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MKTVAQLLNAKQNQQVYTIGADEMVLDALRLMAEKNIGALLVVN HGEVVGVVSERDYARKMVLKGRSSIGTPISAIMSAPVVSVDSKQSVDTCMNLMTDRHL RHLPVVEDGQLLGLLSIGDLVKAAIAEQAELIQQLEQYIRGD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: purine ribonucleotide biosynthetic process [goid GO:0009152] [evidence IEA]; " gene complement(282912..283553) /locus_tag="PA0251" CDS complement(282912..283553) /db_xref="GI:15595448" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248942" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MNDYIARLREKYDAHFGCAPAMTLDCRDFWRHCVAAPEMAVFAY RLESTRRPHHVVITAGMSQAPMHFAPYMGKARWSAELICYLDELGGDDLRHLQWLAGL PFHERLALGHGHAVAFGFPLYEQSLLRHFLLLPAPLEEDASLFDGFALSAHPVDLLWV VPLTEQEYQVNVKEHLEGIARLLTDAGHPLSLDRHRYCYVTGQSPEGLARVLH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(283818..284105) /locus_tag="PA0252" CDS complement(283818..284105) /db_xref="GI:15595449" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248943" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MGGLRKPIRPAMPRHPHTTLLLCLCLTLPGCESGRSYSLSEGAP VTGIRIQRDDRSPLQRLRDCERQGCSERQKIDPFTPDPDYLRAEGHFPLPW*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(284197..284673) /locus_tag="PA0253" CDS complement(284197..284673) /db_xref="GI:15595450" /function="Transcriptional regulators" /protein_id="NP_248944" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="VTGPMTETNALGLPQGPLYLMTEIVRQRERQLTALLAPLELGLH EWRALRIIHAFDGDVPMSVLIEHSQTDRTALGRTIERLVRRGWVSRLPDPDDGRAVLV RRSPAAQAVFEQALAQVAGLDERLLAGLGSGPEEEALTLVLGKLLRAFDGLSRVRQ*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(284714..286204) /locus_tag="PA0254" CDS complement(284714..286204) /db_xref="GI:15595451" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248945" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MNRSALDFRHFVDHLRRQGDLVDVHTEVDANLEIGAITRRVYER RAPAPLFHNIRDSLPGARVLGAPAGLRADRARAHSRLALHFGLPEHSGPRDIVAMLRA AMRAEPIAPRRLERGPVQENVWLGEQVDLTRFPVPLLHEQDGGRYFGTYGFHVVQTPD GSWDSWSVGRLMLVDRNTLAGPTIPTQHIGIIREQWRRLGKPTPWAMALGAPPAALAA AGMPLPEGVSEAGYVGALVGEPVEVVRTQTNGLWVPANTEIVLEGEISLDETALEGPM GEYHGYSFPIGKPQPLFHVHALSFRDQPILPICVAGTPPEENHTIWGTMISAQLLDVA QNAGLPVDMVWCSYEAATCWAVLSIDVQRLAALGTDAAAFAARVAETVFGSHAGHLVP KLILVGNDIDVTEIDQVVWALATRAHPLHDHFAFPQIRDFPMVPYLDAEDKARGSGGR LVINCLYPEQFAGQMRAATASFRHAYPTALRRRVEERWSDYGFGDA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: carboxy-lyase activity [goid GO:0016831] [evidence IEA]; " gene complement(286338..287024) /locus_tag="PA0255" CDS complement(286338..287024) /db_xref="GI:15595452" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248946" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MVGSSARRLRLRRTRGRVGLGLVAGLSVLAGMTDAIGFLATGDF VSFMSGNTTRLAVSLGEGDFGGLVRLSVALASFVVGNALGVILARFSGRRAAPILVCC AMLLALSAVWPFDWNVPALVAAILAMGMLNAVVEQVNGLPIGLTYVTGALSRFGRGLG RWLLGERRNGWRVQLVPWSGMCVGAVLGALLEQQLGLAAMAASAALAALLALLALVIP RPWQMDYMVR*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(287188..288120) /locus_tag="PA0256" CDS complement(287188..288120) /db_xref="GI:15595453" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248947" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MRSWHGVVTKIAKQGKGAVVKNRLGPEELLVPFTVSTLVEVDLD ARIYGTDVDDTPWAEGDERKEVLVGTEVELLTDTDTFPTHASQVLSANFRFALDIVKG GLSGPVRKGAVLVIYHDFQQEIRRGDSGSAFAEAVVAYARNKLYKPAFAIKADTNYAQ LVRDLGKVAAESGEQYFIDTILIATHGTAGQLWLGNPHGDSTADVMARRVQGKQFVEP QAFGATLLELFGKELAIALYGCDFAGDEDGEAAALELRIAANARAVYAGKGTVYLNAS KEGRSTVTCSKAMVVYRTDKIEVLGGNQVPVFDI*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(288384..289175) /locus_tag="PA0257" CDS complement(288384..289175) /db_xref="GI:15595454" /function="Related to phage, transposon, or plasmid" /protein_id="NP_248948" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSRQAYYKRNRAADSKARQADRVVEFVQQIRIRQPRLGTRKLHY LLHCQPDRRLQIGRDRLFQVLGERRLLVLPKRAYHKTTQSFHRFYRHPNLLKSGPNQV VPSGPEHVWAADITYLPASSGPLYLSLVTDAYSRKIVGHHVHESLHAKSVAQAFRQAL RKRQRRQSLVHHSDRGIQYFSALYQSLHARHGVQCSMTDGYDCYQNALAERIYGILKT ELLLSSPENLEQARKMVAEAVQIYNTERPHMALKNKTPDAVHRAF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(289205..289390) /locus_tag="PA0258" CDS complement(289205..289390) /db_xref="GI:15595455" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248949" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSDPKTLTPEQRIKELEQQLELMSQKDQFFETVVDVLKNDYGVS VVKKRSGKSSRKVKSQD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(289562..291004) /locus_tag="PA0259" CDS complement(289562..291004) /db_xref="GI:15595456" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248950" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSADAYHPPTTSPRLETLDVLSIGMSLDVFRQGQVWKALQEQNA AQAEALHVGSILPMDPKKYPTSADDKDMAYEKRQADALELGLKNFLEKWPIPTVTVVR GWDPSTPNLRFTPEETRESLSVKVNDLRVPAGLHWHRIANLQDGIICNDTPEGVLEAL FSLFERNPDLPAVLVYANEGISMAGALSSRDVTLKSLGAVSGPRIPGTLTDAMVALIV GRPERVDWLRQFAPYTKVNENRIDPEFRGWGWRKPPVEFRPTPFIPQPWTERALEQWD ALPVLARLHRPVSVPLTHPDTGERLKREALTAQLAAAWKTASAGLRPAPARLFYDGGL NATPLAELTPALGAAQSSLDLLDSRESYDLTQRLGDTGAASPFVGITLATMASYLNGD SSMVMPLRRKDQATLIGISSPTPGKKPVHDPFGVDLLPQTASGDGPPPSADPVAPASR LTTRLPPGEDYALEEFLSSLKPSTDWQDDL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(291154..293304) /locus_tag="PA0260" CDS complement(291154..293304) /db_xref="GI:15595457" /function="Hypothetical, unclassified, unknown; Membrane proteins" /protein_id="NP_248951" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MNDRVRSRTIVSAQSITLPKGGDVHLVPPPPKPCVTIVVHGVND LAGCYERIERGLCQGLNERLDMPPTLPGGQANPGYLTPAGYSLPADDEGKAENPDVVY YRRKFASGAGGAAVRSVVVPFYWGFREEEQYINKTAAHGEWLDRNGNRLDKSGTKEGG QFVNATTNLPDMWGQGFNGKLFGFISLDWFGGTMTHPLFSAAGRKYMVLAAMRLAMLI KIIRKRYPDDTINVVGHSQGTLLTLLAHAFLKDDGVAPADGVIMLNSPYGLFEPLNEK LQGWSSQQTREARLATLKGILEFICGRRHPVPALSSVALRNCQGYGAIGGPGWVGGQG CQTTIDGERLSFDERDNRGSVYLYFTPQDQTVGLANVQGIGWRGIAEQVKGLPGRTGL PQGFHQRIFTVRKRNGEKEKIGGHAPPHVYPLLLAGEKTWEDTGLGGKDRFGRANFDQ GDSVLLTAPRLPLPTEARFDFDGAVTAPGENSASGVYQVRDTLDPIDAAIGVSNGGWK EKDSGHAVAQQVDAALAYRYGRDARSVERALNEGKELAQQTHVFSARELGTGMVLVTR AETPYEARLRLQTAEGHLEPLSFHSAIPNNPEHNRRVLAYDLAIGAGDSVDDVVFYQY LCRVADWRLDWKASDKGIFSQGDASVDLPDEEVRALYRAEESKNSQLIDATVAYRKSG EFPVVVGNRLPSLVGTQTILDRYHEQAVRFGGTI*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(293301..293798) /locus_tag="PA0261" CDS complement(293301..293798) /db_xref="GI:15595458" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248952" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MKCKTLLIACLFGLGSAQALAVSKLPPQIPVHAGSGRVTLDLRP LLAETNDVEITRVSVCRRVGSHCQETLWRIELPPGWRAGEIEVFGDYPGSSVLLRRPE RLQPDGSYNAFIHFNERSRRHRQTVSSIAVEFCLAGEPGNWMLLDEATCLARRNAEER QGEKP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(293802..296861) /locus_tag="PA0262" CDS complement(293802..296861) /db_xref="GI:15595459" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248953" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MRQRDLKFTFVVGEGKLAFDVVEFELEEALCEPFRLNLKLASDK NAIDFKQVLDQPGTFTLWQDGRPARYVHGIVSHFTQGSSGFRRTRYELLLEPQLARLE LCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREYCVQAGDSDHYLHDRLA FEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQPEGDNPQPVLHSFRYSEN VRTARQTQRDYSFKRPTYDQEHHLAGEALEHQGSSYERYDYPGRYKRSGAGRPFTESR LRGHRRDARVASVSGDDPRLIPGHAFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEE SADAPLGVSYDLRAELVPEDVEWRPAPLPRPRIDGPQIATVVGPAGEEIHCDEWGRVK VQFPWDREGRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQEVIVDYLDGDCDQPIVTG RTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISAALMSDHGASALH LGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTEEQLRAGAGHLDRGVVVQV LEAALELARELGDYAGEHQGVGHDAAPQQTLQEAVRDLGHGANDESGKSNGGKPAIAL SGPAGIAAATPASLTLAAGEHVDSVARQNQQVTAGQKVVINAGSDIGLFAQGGELRQI THQGPMLLQAQKNDIRLEAKQSVEVSASQQHVLVTAKEHITLMCGGAYLTLKGGNIEL GMPGNFVVKAAKHSHVGAASLEAELPQFEVGETQRRFVLKQLDGQTAMPNVPYTITMA NGEVIEGVTDAEGATQLLQKDAMNIAKVDMKHTKSPASAVAGIAAAVGAAVAVGKLLG GPDAEAGRALSEGEISLAKGVFGDSIDYSTVRLRDEDYVPWQGKDYVMAPNGHIYFGE ELRGVADWSLESLQRQGLFIHEMTHVWQHQHGVNVLLVGAYQQARQFLLGDQYAYRLE PGKTLKDYNIEQQGDIVRDYFLEKNEFGEASANSRFAGVLKNFPTGY*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: protein secretion by the type VI secretion system [goid GO:0033103] [evidence IEA]; " gene complement(297043..297561) /locus_tag="PA0263" /name="hcpC" CDS complement(297043..297561) /db_xref="GI:15595460" /function="Secreted Factors (toxins, enzymes, alginate)" /protein_id="NP_248954" /localization_and_confidence="Extracellular, Class 3 (primary)" /product="secreted protein Hcp" /translation="MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGF NHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTS AAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGT SGSDDWRSPVAG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: interaction with host via secreted substance [goid GO:0052048] [evidence IEA]; " gene complement(298816..298892) /locus_tag="PA0263.1" tRNA complement(298816..298892) /function="Non-coding RNA gene" /product="tRNA-Arg" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(299081..299497) /locus_tag="PA0264" CDS complement(299081..299497) /db_xref="GI:15595461" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248955" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VSSGSTSTTPRAWLSGSVVTGKCCLLVIRKGQRPGVPFPAPCAS GVAVTGRPPCATGGRGRTRPPTGVGEDTKDSCGKGIADETPRRHHGGPATRKAGRATG RSERGHSRGTRPAELMPIPRSPVVVALGAFEISNES*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 299522..300973 /locus_tag="PA0265" /name="gabD" CDS 299522..300973 /db_xref="GI:15595462" /function="Central intermediary metabolism; Amino acid biosynthesis and metabolism; Carbon compound catabolism" /protein_id="NP_248956" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="succinate-semialdehyde dehydrogenase" /translation="MQLKDAKLFRQQAYVDGAWVDADNGQTIKVNNPATGEIIGSVPK MGAAETRRAIEAADKALPAWRALTAKERANKLRRWFDLMIENQDDLARLMTIEQGKPL AEAKGEIAYAASFLEWFGEEAKRIYGDTIPGHQPDKRIIVIKQPIGVTAAITPWNFPS AMITRKAGPALAAGCTMVLKPASQTPYSALALAELAERAGIPKGVFSVVTGSAGEVGG ELTSNPIVRKLTFTGSTEIGRQLMAECAQDIKKVSLELGGNAPFIVFDDADLDAAVEG ALISKYRNNGQTCVCANRLYVQDGVYDAFVDKLKAAVAKLNIGNGLEAGVTTGPLIDA KAVAKVEEHIADAVSKGAKVVSGGKPHALGGTFFEPTILVDVPKNALVSKDETFGPLA PVFRFKDEAEVIAMSNDTEFGLASYFYARDLARVFRVAEQLEYGMVGINTGLISNEVA PFGGIKASGLGREGSKYGIEDYLEIKYLCLGGI*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: metabolic process [goid GO:0008152] [evidence ISS]; GO_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [goid GO:0016620] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence ISS]; " gene 301218..302498 /locus_tag="PA0266" /name="gabT" CDS 301218..302498 /function="Central intermediary metabolism; Amino acid biosynthesis and metabolism; Carbon compound catabolism" /product_synonym="gabA transaminase" /protein_id="NP_248957" /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: cellular catabolic process [goid GO:0044248] [evidence ISS]; GO_process: carbon utilization by utilization of organic compounds [goid GO:0015978] [evidence ISS]; GO_process: metabolic process [goid GO:0008152] [evidence ISS]; GO_process: gamma-aminobutyric acid catabolic process [goid GO:0009450] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence ISS]; " /db_xref="GI:15595463" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="4-aminobutyrate aminotransferase" /translation="MSKTNESLLKRRQAAVPRGVGQIHPVVAERAENSTVWDVEGREY IDFAGGIAVLNTGHLHPKVIAAVQEQLGKLSHTCFQVLAYEPYIELAEEIAKRVPGDF PKKTLLVTSGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGM GLMPGGIFRALAPCELHGVSEDDSIASIERIFKNDAQPQDIAAIIIEPVQGEGGFYVN SKSFMQRLRALCDQHGILLIADEVQTGAGRTGTFFATEQLGIVPDLTTFAKSVGGGFP ISGVAGKAEIMDAIAPGGLGGTYAGSPIACAAALAVLKVFEEEKLLERSQAVGERLKA GLREIQAKHKVIGDVRGLGSMVAIELFEGGDTHKPAAELVSKIVVRAREKGLILLSCG TYYNVIRFLMPVTIPDAQLEKGLAILAECFDELA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 302824..304023 /locus_tag="PA0267" CDS 302824..304023 /db_xref="GI:15595464" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248958" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MSAAKKAPVILIADPDPWSRDLLGQLVLGVRCDARLVLCGDGGE ALAHCRRRRFALILAELNLPQVDGFELLREARLRRSVAEQPFILISDRADQASVRAAV ALAPTAYLVKPFQAENLMQRLRGLLLKGDEVVACPLPERDAGENLEAFLERARDSAEG APLLADVRAASDRCLSAEEHPLRVLEAEFGRDPQITAGLIAAANSAARHVGPACQTLG QALRRLGLGHSLNLVLGFSLQRAIQLGEPLLAERAMHFWDLSQRCADIAWELADALGA DVERCYTAGLLHRLGDLALLRTLQDWCDGGGALDEARLDELLGRFGASFGSALRARWR LPLELRRLIAAAYQFGGVLSREELILSLATQAASLPEDDAEQLAESKAARMLGLDGER LAKLLQP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(304177..305598) /locus_tag="PA0268" CDS complement(304177..305598) /db_xref="GI:15595465" /function="Transcriptional regulators" /protein_id="NP_248959" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MELQLILDGRHDLVGQLYRQLRDAILHGRLATGDRLPATRYLAE RLEVSRKTVSEAYERLASEGFLEGRVGSGTFVARGPAGEAPPQRADGPLRPAARWARI EPQSGLMDQRAPLRYSFAGGTTDKRRFPFDTWRTCVLQALRLQQRSPAFYKETEGDPE LRLAISRYLAINRAVQCDWNALMVTQGAQQGLDLLARVMLDPGDLAVVEEPGYPPARA SLLATGAEVRGVPVDAEGLRVDLLPDNAKLVYVTPSHQFPLGMPMSLERRLQLLDWAQ RHRALIIEDDYDSEYRFDGRSLESLRSLDRNGQVAYLGTFSKTLFPELRLGYLLPPAS LREAVLAARKLVDRHSETLQQRALALFIQRGDFARHTRRLQREYAQRRGRLLERLHGD LSPWLEALPAVAGIHLAARCREPLDVLRIARHLRQQGLEVGTLPPFYAETPAQAGFLF GFGCIERDDIDPALDLLRAELRR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: amino acid derivative biosynthetic process [goid GO:0042398] [evidence IEA]; " gene 305725..306162 /locus_tag="PA0269" CDS 305725..306162 /db_xref="GI:15595466" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248960" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MTTRLEWAKASPDAYAAMLGLEKALAKAGLERPLIELVYLRTSQ INGCAYCVNMHANDARKAGETEQRLQALCVWQETPYFTPRERAALAWTEQLARLSQGA LPHGLLDELREHFDDKEIAELTLAVSAINAWNRFGVGMGMQPE*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 306174..306581 /locus_tag="PA0270" CDS 306174..306581 /db_xref="GI:15595467" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248961" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MKANRSIACLLLAALPTLASAHVAEKVETLHDQALAEIPGHRGL MLTVSFKPGQVSAPHVHPGSVFVYVLEGTVQTQLEGGSVETYTVGQSWYEPANVPHLL ARNPDPMKPAKLLVWELLKEGDPILKPLERGAH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 306615..306899 /locus_tag="PA0271" CDS 306615..306899 /db_xref="GI:15595468" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248962" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSASQVIRIRARNGQSERLGLRLQQLVEPGLEAPGCLEYQVRRD ALEPDLWLVCSQWREAQQMFDYLAGGIQQVFAEVLWRSLAASLEVQDDAG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(306896..307828) /locus_tag="PA0272" CDS complement(306896..307828) /db_xref="GI:15595469" /function="Transcriptional regulators" /protein_id="NP_248963" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MLIANGLRKVDMQDLLVFLQVHQRQNLVEVAEHLNLSPSTVSYC LKKLRQAFDDELFIATRGGMQPTHKSRAMLPHVEEMLARINACHAAQGSFDPRGEPRT FTLCAPEYVELLILPALLRRLAANGPRIGLDIRRLGPELPTEALLDGQVDLVFDFGPE YHRPAPELQALALFSDELLCVQDRAQPRHERLELDEFCRRRFVFPTPLDASNANLVDT WLRRQGRSREVAARANSYVAALQLLSGSDFVLMLPRRIHALLDDGRHHACLAPPGLPP FALHLSWSRAAEQDPANLWLREQVLIVCAELGLL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: positive regulation of transcription, DNA-dependent [goid GO:0045893] [evidence IEA]; " gene complement(307878..309092) /locus_tag="PA0273" CDS complement(307878..309092) /function="Membrane proteins; Transport of small molecules" /product_synonym="probable MFS transporter" /protein_id="NP_248964" /db_xref="GI:15595470" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable major facilitator superfamily (MFS) transporter" /translation="MPTANPPGRTLWLMAAIVLVGLNLRLSMAAVGPLLNAMRGEIAL SFGDVSLLTALPMLTLGLGMFFGLGIARRVGEWRSVALALLLIGAASALRLGSRGLPD LLGSAMLAGLGIALIQALMPALIKARFGARTPLCMGLYVTAIMAGAALSASAAPTLAE HAGWRLGLGAWAALAALALLAWWLQPGTRLRLPDAQPGRSLLRYPRTWLLVLFFGLGT ACYTCVLAWLAPYYLEQGWSAQESGLLLGFLTAMEVLSGLLAPALASRSRDRRPVLVG LTALMLAGFLGLAWAPASLPLLWALCLGLGIGGLFPMGLIVCLDHFDAPQRAGQLAAL VQGAGYLIAGVSPWIAGLLRDSLGSFTGAWLGLATVAALLLGLGLRFDPRRYAALFAE RQARGVGAESLR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(309255..310025) /locus_tag="PA0274" CDS complement(309255..310025) /db_xref="GI:15595471" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248965" /localization_and_confidence="Outer Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MLRPALPAVLCLYCLLLALPARAALDDQQRALQQLQVQACRAVG SLLLLRGEGFQEQHAAQLEKDLASLDRALAAAPEGVLLRQGEKTLVARIREGAAYGPR EEDLPWRYPQQLSRALRDFLNLVERQVPPPPPGQPLPLWQLPVRVEYLSLQYLARAYL GGLETAREQPRDYLGQDESVLVPLIDRRIALLVAQSANPAGLKKLENRWEYLSQALRD LNSKSSALVSASGRPWAPIIVDRHARALSESLMRLSAE*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(310134..310820) /locus_tag="PA0275" CDS complement(310134..310820) /db_xref="GI:15595472" /function="Transcriptional regulators" /protein_id="NP_248966" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MNERTDYRSQLQAGRWFQGLPEALQTHLLALAQPRQLPPGQRLF ARGDAPCGLYCVVEGAIRISAVSENGKEALLILVEAPHWFGEIALFDGQARTHDAYAE GHTQLLQVPQAALLELLRREPHYWRDVALLMSHKLRLAFIALEEMALLPAAQRLARRL LMLAEGYDNSRSRQVLHLPQEQLALMLSLSRQTTNQILKDLEAQGILQLSYGGIEILD LAGLRAATHG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: regulation of nitrogen utilization [goid GO:0006808] [evidence IEA]; " gene 310896..311411 /locus_tag="PA0276" CDS 310896..311411 /db_xref="GI:15595473" /function="Membrane proteins" /protein_id="NP_248967" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MKTLVDHLAQYAAYHRDRRNIFSHFIGIPMIVLSIAVLLARPAL GFGLSPALLLALAAALFYLRLDLRFGVAMTALLALTVWGAAQLAAGTTAAWLGWGVGL FVVGWIIQFVGHYYEGRKPAFVDDLSGLIVGPLFVLAELAFLLGLRGDVQREVEERAG PTCIREHKRAA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(311451..312209) /locus_tag="PA0277" CDS complement(311451..312209) /db_xref="GI:15595474" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248968" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MKIRLSLSALALACATLAGCQNLPQGDLMQHGMMAVKAATLSDA EVRQVADQACAESDQQNRIAPANSKYGQRLDKIAKALGDQIDGVPVNYKVYLTEEVNA WAMANGCIRVYSGLMELMSDNEIEGVLGHEMGHVALGHTRKAAQTAYAAAAVRGAAGA SKSGALAALSGSQLGELTESLVNAQFSQSQESDADDFSYELLKKRGVNTQGLVTAFEK LAKLGGGDSSMFDSHPGSQARADHIRQRIAADRK*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(312381..313133) /locus_tag="PA0278" CDS complement(312381..313133) /db_xref="GI:15595475" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248969" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MSVDLHALIPLIALTFLLAGFVKGVVGLGLPTVSVGLLGLAMPP MQAAALLIVPSMVTNLWQLACGPRFLGLMKRLAGLLLGVVVGTLLVGAWLGGDAPRQA TGVLGLALVAYALLGLAAIPLHLPARHEPWAGPLVGLATGALTAVTGVFVIPAVPYLG ALGLQRDELVQALGLSFSASTLALAVTLGVHGDLLEPQMLGASLLTLVPALGGMLLGQ WLRQRISATLFRRCFFVGLLLLGADLAWRGFH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 313227..313925 /locus_tag="PA0279" /gene_synonym="ydfF" CDS 313227..313925 /db_xref="GI:15595476" /function="Transcriptional regulators" /protein_id="NP_248970" /localization_and_confidence="Unknown, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MQFNPGFSSLAALLADPGRAQMIWALMDGSARPASELALLAGVS PSSASGHLGRLVEGGVLSLEARGRNRFYRLAGPEVGQAVEALASASLALQPQRRSLPP SHGTPSALREARTCYDHLAGELAVGVFARMLDAGWIEQEGRTLRLSATGEAGLAGLGI DLAEVRRRRRQFACACPDWSERKPHLGGALGAALLEACLRQGWLRPQDGSRALQVSSK GRAGLRGLAERTAG*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(313938..314927) /locus_tag="PA0280" /name="cysA" CDS complement(313938..314927) /db_xref="GI:15595477" /function="Transport of small molecules" /protein_id="NP_248971" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="sulfate transport protein CysA" /translation="MSIEIRNVSKNFNAFKALDDINLDIQSGELVALLGPSGCGKTTL LRIIAGLETPDAGNIVFHGEDVSQHDVRDRNVGFVFQHYALFRHMTVFDNVAFGLRMK PKGERPGESAIKAKVHELLNMVQLDWLADRYPEQLSGGQRQRIALARALAVEPKILLL DEPFGALDAKVRKELRRWLARLHEEINLTSVFVTHDQEEAMEVADRIVVMNKGVIEQI GSPGEVYENPASDFVYHFLGDSNRLQLGNDQHLLFRPHEVSLSRSAVAEHRAAEVRDI RPLGAITRVTLKVDGQDELIEAEVVKDHDSLAGLARGETLYFKPKAFQPVANL*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(314931..315800) /locus_tag="PA0281" /name="cysW" CDS complement(314931..315800) /db_xref="GI:15595478" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248972" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="sulfate transport protein CysW" /translation="MSSASISAATASASRRGNAGGRLALIVLAWLVFALFLLLPLYVV LSEALKQGFGTFFEAILEPDALAALKLTLIAVAISVPLNLLFGVAAAWCVSKFEFRGK SILVTLIDLPFSVSPVIAGLIYVLLFGAQGYFGEWLSDHDIQIVFAVPGIVLATLFVT VPFVARELIPLMQEQGTQEEEAARLLGANGWQMFWHVTLPNIKWGLIYGVVLCTARAM GEFGAVSVVSGHIRGVTNTLPLHVEILYNEYNHVAAFSVASLLLLMALVILLLKQWSE SRMSRLKSNADEE*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_component: membrane [goid GO:0016020] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(315811..316629) /locus_tag="PA0282" /name="cysT" CDS complement(315811..316629) /db_xref="GI:15595479" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248973" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="sulfate transport protein CysT" /translation="MSRRISPVIPGFGLTLGYTLVYLSLLVLIPLGAMFLKTTQLSWE QFWAIISAPRVLAALKLSFGTALAAAVLNGLIGTLLAWVLVRYEFPGRKIIDAMIDLP FALPTAVAGIALTALYAPAGLVGQFASDLGFKIAYTPLGITLALTFVTLPFVVRTVQP VLADIPKEVEEAAACLGARPLQVFRHILVPALLPAWLTGFALAFARGVGEYGSVIFIA GNMPMKTEILPLLIMVKLDQYDYTGATAIGVLMLVVSFILLLLINLLQRRIETP*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_component: membrane [goid GO:0016020] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(316791..317789) /locus_tag="PA0283" /name="sbp" CDS complement(316791..317789) /function="Transport of small molecules" /product_synonym="sulfate starvation-induced protein 2" /protein_id="NP_248974" /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " /db_xref="GI:15595480" /localization_and_confidence="Periplasmic, Class 1 (primary); Periplasmic, Class 2 (primary); Periplasmic, Class 3 (primary)" /product="sulfate-binding protein precursor" /translation="MSLRRFALAALASALVSGPVAAATQLLNVSYDPTRELYQAYNAA FIKHWKAQGGEDLTVQQSHGGSGKQARAVIDGLKADVVTLALAGDIDELHKLGKLLPA DWQARLPDNSTPYTSTIVFLVRKGNPKGIKDWGDLTKEGVEVITPNPKTSGGARWNFL AAWAWAKKQYGSDEKAKDYVQALYKHVPVLDTGARGSTITFVNNQIGDVLLAWENEAF LAKKEQGGENFEIVVPSISILAEPPVAVVDKVVEKKGTRKVAEAYLQYLYSEEGQRIA AQNFYRPRNQKVAAEFATQFPKLNLVTVDSDFGGWKTAQPKFFNDGGIFDQIYQAQ*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(317966..318148) /locus_tag="PA0284" CDS complement(317966..318148) /db_xref="GI:15595481" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248975" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSATLRSLDGQDEATILREIQSALRGLRFGAVEITVHNGQVVQI ERKEKFRLQQPAVKQA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(318312..320594) /locus_tag="PA0285" CDS complement(318312..320594) /db_xref="GI:15595482" /function="Membrane proteins" /protein_id="NP_248976" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSPRLSALRLSLAYLAIAIAWAFLSDHLLQNQVQDHDQLVFWMT AKRLFFFAATGLLLYLYLVRQFRRKAQAYDELHGSEQRLNRALEAVRDGLWDWDLVTD RMFVSPGYAALIGLAPEELGDPIETWKKRLHPEEYATVLEAHRNHLQGLTDNLDHIYR LRHKDGDYRWIHSRGRVLRDALGKPLHYTGVARDITLQRLKEDHLRQAAAVFDSTREG VLVTDAQAVIVHVNPSFERITGYRSEDVLGKTPAILRSGRQDQAFYQRLWLALREQDV WSGEIWNRRKSGEIYPQWLHIRAVRNDQGQLTHYVGVFSDLSSIKRSENELDFLAHHD SLTGLPNRVLLRERIEQALENGKDRTVAGALLLIDLDHFKHINDSLGHTTGDMLLKEV SKRLQHQLDERCLLSRLGGDEFAILVENDDPEAVARLSQRILDGFNAPFDIHCQPIYI SASLGVSLYPEDASDVDHLMQHADAALFQAKDSGRNAYAFYTRVLTARARAHVQVESA LRHALEHDELRVHYQPVHDLASGRIVGVESLVRWQHPERGLVPPGEFVPVAEECGLIA ALDNWVLKRACRQMREWQQRGVELEFVAVNVSSRLFNRGGLEERIANALEESGLEPRY LELEVTESAVMEDFEQSLNLLCRLRILGVNLAIDDFGTGYSSLMRLKRLPVHKLKIDQ GFVAGLPGAVDDAAIARAIVALAQSMGLRVVAEGIEHQDQALFLREHGCDFGQGYWYG RPQPAEALRFDLPPVALPED*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: cyclase activity [goid GO:0009975] [evidence IEA]; " gene 320766..321944 /locus_tag="PA0286" /gene_synonym="desA " /name="desA" CDS 320766..321944 /function="Fatty acid and phospholipid metabolism" /product_synonym="delta-9 fatty acid desaturase, DesA " /protein_id="NP_248977" /db_xref="GI:15595483" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="delta-9 fatty acid desaturase, DesA" /translation="MWFNGFLDLSPWQLVAVTLVLTHITIVSVTVYLHRYSAHRALDL HPALQHFFRFWLWLTTGMNTREWTAIHRKHHAKCETVEDPHSPVHKGLFTVLRAGAEL YKAEAKNQDTLRIYGKNCPDDWIERNLYSRFPIGGVVLMALIDLALFGALGLTVWAVQ MVWIPFWAAGVVNGLGHAVGYRNFECRDAATNLVPWGILIGGEELHNNHHTYPNSAKL SVKKWEFDLGWAWIKLFSFLRLARVARVAPIAHRVEGKHSLDMDTAMAILNNRFQIMA QYRKLVIAPLVKQEVAKADESVRHLFRRAKRLLSRETSLLQDRHHVRIDSMLAHSQAL KVIYEKRLALQQIWAKTSANGHDMLAAIKDWVHEAEASGIQSLKEFAAQLKTYSLRPA *" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 322175..323560 /locus_tag="PA0287" /gene_synonym="speB1" /name="gpuP" CDS 322175..323560 /db_xref="GI:15595484" /function="Transport of small molecules" /protein_id="NP_248978" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="3-guanidinopropionate transport protein" /translation="MLLDYLIMLVYALAMLGLGWYGMRKAKSQSDFLVAGRRLGPGLY LGTMAAVVLGGASTIGTVKLGYQFGLSGLWLVFMLGLGIIVLSLVFSRQIARLRVFTV TQVLEQRYQASSRLIGGVVMVAYDLMVAVTATIAIGSVTEVVFGIPRIPAILCGGGIV IVYSVIGGMWSLTLTDIIQFVIKTVGIFLVLLPLSIDGAGGLARMQEVLPAGFFDLGH IGLDTILTYFLLYFFGALIGQDIWQRVFTARSETVVRYAGLGAGVYCMLYGAACALIG AAARVLLPDLAVPENAYAEITREVLAPGLRGLVVAAALSAIMSTASGCLLAAATVLQE DIYARFLRPGTTSDIRLSRCITLLMGVAMLVLACLVNDVIAALSIAYNLLVGGLLVPI VGALLWRRASPQGAIASIVAGCLAVIACMARDGLLANSPIVYGLLASLATFVAVSLAT RPAASLRAQPE*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_function: solute:sodium symporter activity [goid GO:0015370] [evidence IEA]; " gene 323616..324572 /locus_tag="PA0288" /name="gpuA" CDS 323616..324572 /function="Amino acid biosynthesis and metabolism" /product_synonym="proclavaminic acid amidino hydrolase, PAH; proclavaminate amidino hydrolase; AUH; agmatine ureohydrolase" /protein_id="NP_248979" /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_function: agmatinase activity [goid GO:0008783] [evidence IEA]; " /db_xref="GI:15595485" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="3-guanidinopropionase" /translation="MSNDHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPW DGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDAPVNPIDLLDSL RRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYFGD NPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELG VEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLD LVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 324625..325587 /locus_tag="PA0289" /name="gpuR" CDS 324625..325587 /db_xref="GI:15595486" /function="Transcriptional regulators" /protein_id="NP_248980" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="transcriptional activator GpuR" /translation="MGAGMLGNINDIDLRMLRTFCAIVEAGGFTAAQARLNTSLSRLS VLVRDLEVRLGYSLCRRGNGGFQLTEEGQELYDAALGLFSDIARFREQVRGLGGRDRE ALHLGCVDGVIGQHCLPLPLAIRLFRQRAPEVLLKLHTRRPDELEHAVLEERLQLAVG AFHHRLSGLYYQPLFREEQNLYCGSAHPFFARADDEPTLGEICAADYVGRGYMAENHR PHDLRFNQGTDAYTMEAIATLVFSGTYIGYLPTHYAATWVAEGRMRAIRPRQLAYDSE FHCITRQGHEERPTLTLFLRSLFEAQKQLGVQVPANTNGIARQL*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: positive regulation of transcription, DNA-dependent [goid GO:0045893] [evidence IEA]; " gene 325700..326671 /locus_tag="PA0290" CDS 325700..326671 /db_xref="GI:15595487" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248981" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MDDLTGIPEDPQEAALALLHSRAEVARLKEREQLFSALLASVNS VLWAYDWQNRRMVYVSPAYEKIFGRSAALLLADYEEWRNSIYPDDLDYADSSLLQVLE RGAVEQREYRIVRGDGEVRWLNDKCFVSRQGEAGLPLMVVGIAEDITDKKHMESELQR LATTDVLTQSSNRRYFFDSAEAAFKECRREGIPLAFLLLDVDDFKKINDRFGHQVGDQ VLQRIAQSGSAALRRGDLFGRIGGEEFAVLLPGCDEQTARQIGERLQREVQRLRFQEG EHSFGITVSQGLTVLQADDEGLGALYSRADAAMYSAKRQGKDCIVVG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: cyclase activity [goid GO:0009975] [evidence IEA]; " gene 327284..328666 /locus_tag="PA0291" /name="oprE" CDS 327284..328666 /function="Membrane proteins; Transport of small molecules" /product_synonym="Porin E1" /protein_id="NP_248982" /note="GO_component: membrane [goid GO:0016020] [evidence IDA]; GO_process: transport [goid GO:0006810] [evidence IDA]; " /db_xref="GI:15595488" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Outer Membrane, Class 3 (primary)" /product="Anaerobically-induced outer membrane porin OprE precursor" /translation="MKSRKINKSRLALAITAGTLGALAQQAVAAGFIEDSKASLTLRN FYINTDNRNGTASPSKQEEWGQGFILNYQSGFTQGTVGFGVDALGLLGVRLDGGGRAG KSGLDRQPGTVFPLESNGEPVHDFASLGLTAKAKVSNTEFRYGTLQPKLPVVTYNDGR LLPVTFEGGQVTSTDLKDFTLVAGQLEHSKGRNSTDNRSLSIAGANGSSASSRDSNKF YYAGGDYKVNKDLTLQYYYGNLDDFYKQHFLGLIHNWQIGPGVLKTDLRAFDSSSDGK NGSRSGRADGYVSSGYYGSGVTKGEVDNRAFSGLFTYTVSGHSIGAGYQILNGDSDFP FLNRGDGEGSTAYLITDVQIGKFQRAGERTWQVRYGYDFATVGVPGLTFNTIYLSGDK IKTARGDQSEWERDISLAYVIPDGTFKGLGFTWKNASFRSGLPAAGSSNNQRDQDENR LIVSYTLPLL*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(328801..329907) /locus_tag="PA0292" /name="aguA" CDS complement(328801..329907) /function="Amino acid biosynthesis and metabolism" /product_synonym="agmatine iminohydrolase" /protein_id="NP_248983" /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence IDA]; GO_process: biological_process [goid GO:0008150] [evidence RCA]; GO_function: molecular_function [goid GO:0003674] [evidence RCA]; GO_function: agmatine deiminase activity [goid GO:0047632] [evidence IEA]; " /db_xref="GI:15595489" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="agmatine deiminase" /translation="MSNPTSTPRADGFRMPAEWEPHEQTWMVWPERPDNWRNGGKPAQ AAFAAVAKAIARFEPVTVCASAGQYENARARLDDGNIRVVEISSDDAWVRDTGPTFVI DDKGDVRGVDWGFNAWGGFEGGLYFPWQRDDQVARKILEIERRARYRTDDFVLEGGSI HVDGEGTLITTEECLLNHNRNPHLSQAEIERTLRDYLAVESIIWLPNGLYNDETDGHV DNFCCYARPGEVLLAWTDDQDDPNYLRCQAALRVLEESRDAKGRKLVVHKMPIPGPLY ATQEECDGVDIVEGSQPRDPSIRLAGSYVNFLIVNGGIIAPSFDDPKDAEARAILQRV FPEHEVVMVPGREILLGGGNIHCITQQQPAPRKA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(329993..330871) /locus_tag="PA0293" /name="aguB" CDS complement(329993..330871) /function="Amino acid biosynthesis and metabolism; Putative enzymes" /product_synonym="N-carbamoylputrescine amidase" /protein_id="NP_248984" /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence IDA]; GO_function: catalytic activity [goid GO:0003824] [evidence IDA]; GO_process: arginine metabolic process [goid GO:0006525] [evidence IDA]; GO_process: proline metabolic process [goid GO:0006560] [evidence IDA]; GO_function: N-carbamoylputrescine amidase activity [goid GO:0050126] [evidence IEA]; " /db_xref="GI:15595490" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="N-carbamoylputrescine amidohydrolase" /translation="MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQE LFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSI AVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFP ESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGR EEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRR PNLYGPLKTLDGSLES*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(331034..331699) /locus_tag="PA0294" /name="aguR" CDS complement(331034..331699) /db_xref="GI:15595491" /function="Transcriptional regulators" /protein_id="NP_248985" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="transcriptional regulator AguR" /translation="MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLSIYSVAE RAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERM LAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIF SLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISD LNR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: regulation of transcription, DNA-dependent [goid GO:0006355] [evidence IDA]; GO_function: transcription regulator activity [goid GO:0030528] [evidence IDA]; GO_process: arginine metabolic process [goid GO:0006525] [evidence IDA]; GO_process: proline metabolic process [goid GO:0006560] [evidence IDA]; " gene complement(331762..332823) /locus_tag="PA0295" CDS complement(331762..332823) /db_xref="GI:15595492" /function="Transport of small molecules" /protein_id="NP_248986" /localization_and_confidence="Periplasmic, Class 1 (primary); Periplasmic, Class 2 (primary); Periplasmic, Class 3 (primary)" /product="probable periplasmic polyamine binding protein" /translation="MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDT GIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHL DRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQR LKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYI ADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHR FIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPP EKLRPVVDEIWKAFRGASH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(333079..334455) /locus_tag="PA0296" /name="spuI" CDS complement(333079..334455) /function="Putative enzymes; Carbon compound catabolism" /product_synonym="pauA1" /protein_id="NP_248987" /note="GO_process: glutamine biosynthetic process [goid GO:0006542] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; " /db_xref="GI:15595493" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="Glutamylpolyamine synthetase" /translation="MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIER NSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKR PTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGR PQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFE VNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDK HGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWG LDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEG NSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLE YNWYLHTV*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 334734..335486 /locus_tag="PA0297" /gene_synonym="ycjL" /name="spuA" CDS 334734..335486 /function="Amino acid biosynthesis and metabolism; Carbon compound catabolism" /product_synonym="pauD1" /protein_id="NP_248988" /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence IDA]; GO_process: GMP biosynthetic process [goid GO:0006177] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence ISS]; " /db_xref="GI:15595494" /localization_and_confidence="Unknown, Class 3 (primary)" /product="probable glutamine amidotransferase" /translation="MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIP ALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAA IDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHV QPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGV QWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 335527..336885 /locus_tag="PA0298" /name="spuB" CDS 335527..336885 /function="Putative enzymes; Carbon compound catabolism" /product_synonym="pauA2" /protein_id="NP_248989" /note="GO_function: catalytic activity [goid GO:0003824] [evidence IDA]; GO_process: glutamine biosynthetic process [goid GO:0006542] [evidence IEA]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence IDA]; " /db_xref="GI:15595495" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="Glutamylpolyamine synthetase" /translation="MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAE KGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVI HDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPV GRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHG DALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIF SNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTV GLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERR NLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLL SV*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 336951..338321 /locus_tag="PA0299" /name="spuC" CDS 336951..338321 /function="Putative enzymes; Carbon compound catabolism" /product_synonym="spuC" /protein_id="NP_248990" /note="GO_function: catalytic activity [goid GO:0003824] [evidence ISS]; GO_process: polyamine catabolic process [goid GO:0006598] [evidence ISS]; " /db_xref="GI:15595496" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="Polyamine:pyruvate transaminase" /translation="MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEG VYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVEL AKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGST VAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEV GEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFG SQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAV ALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKT RERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQT AAAVLA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 338437..339540 /locus_tag="PA0300" /gene_synonym="potF2" /name="spuD" CDS 338437..339540 /db_xref="GI:15595497" /function="Transport of small molecules" /protein_id="NP_248991" /localization_and_confidence="Periplasmic, Class 1 (primary); Periplasmic, Class 3 (primary)" /product="polyamine transport protein" /translation="MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTL EKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKS KLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDL VFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYV TYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDM VAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYP SEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 339959..341056 /locus_tag="PA0301" /gene_synonym="potF3" /name="spuE" CDS 339959..341056 /db_xref="GI:15595498" /function="Transport of small molecules" /protein_id="NP_248992" /localization_and_confidence="Periplasmic, Class 1 (primary); Periplasmic, Class 3 (primary)" /product="polyamine transport protein" /translation="MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLK DFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSK LPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILF EPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSY FHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMA IPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQ AVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: transport [goid GO:0006810] [evidence ISS]; " gene 341111..342265 /locus_tag="PA0302" /gene_synonym="potG" /name="spuF" CDS 341111..342265 /db_xref="GI:15595499" /function="Transport of small molecules" /protein_id="NP_248993" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Cytoplasmic Membrane, Class 3 (primary)" /product="polyamine transport protein PotG" /translation="MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLT INKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQS YALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQR VALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMT MAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACP QLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYL GGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_process: putrescine transport [goid GO:0015847] [evidence RCA]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 342292..343173 /locus_tag="PA0303" /gene_synonym="potH" /name="spuG" CDS 342292..343173 /db_xref="GI:15595500" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248994" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="polyamine transport protein PotH" /translation="MPTGRHAVIGVPFLWLFLFFLLPFAIVLKISLAEADVAIPPYTE IFAYADQQLQVLLNLGNYLMLTDDPLYIDAYLGSLKMAFISTLICLLVGYPMAYAIAR SSQSSQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNSVLMGLGLISEPLTILNTN IAVYIGIVYSYLPFMILPLYANLVKHDPSLLEAASDLGARNFTSFWKITVPLSKNGII AGCMLVFIPAVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAILII PIILFNKNQAKELEGKV*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_component: membrane [goid GO:0016020] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 343256..344125 /locus_tag="PA0304" /gene_synonym="potI" /name="spuH" CDS 343256..344125 /db_xref="GI:15595501" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_248995" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="polyamine transport protein PotI" /translation="MKRWNFSNVMLIVGLLFIYLPMLILVIYSFNASKLVTVWGGWSV KWYVGLLDNTQLVSSVGRSLEIAFYTAFSSVFLGTLAAFVLTRIPRFRGRTLFGGMVT APLVMPEVITGLSLLLLFVAMAQLIGWPQERGIVTIWIAHTSFCSSYVAVVVSARLRE LDLSIEEAAMDLGAKPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGPGS TTLPMEVFSAVRLGVKPEINAVASLILLSVSLFTFFAWYFTRQAEERRRRAIQQAMEE TATDWQKGSPTPA*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." /note="GO_component: membrane [goid GO:0016020] [evidence ISS]; GO_process: transport [goid GO:0006810] [evidence ISS]; GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " CDS complement(344303..346690) /db_xref="GI:15595502" /function="Carbon compound catabolism" /protein_id="NP_248996" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="acylhomoserine lactone acylase B" /translation="MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVD VRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTD RLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRP FTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGAL GAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAP AVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNP NQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWA FLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKR PEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYY NLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGK RLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALP RLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTH EHALGQQALLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPT HSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene complement(344303..346690) /locus_tag="PA0305" /name="hacB" gene 346801..347853 /locus_tag="PA0306" CDS 346801..347853 /db_xref="GI:15595503" /function="Transcriptional regulators" /protein_id="NP_248997" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPL PPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEE ALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLAL ISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPD MHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALA AGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQY RARLAKREEGYSTSGT*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(348440..349051) /locus_tag="PA0307" CDS complement(348440..349051) /db_xref="GI:15595504" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248998" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRY IRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGK GVEFHVLQKPGSQGRLPDNLAALRALAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSE GAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 349050..350069 /locus_tag="PA0308" CDS 349050..350069 /db_xref="GI:15595505" /function="Hypothetical, unclassified, unknown" /protein_id="NP_248999" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLA AAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMH GYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQA AELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRL LSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRA LSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLS DALGA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: photosynthesis [goid GO:0015979] [evidence IEA]; " gene complement(350089..350841) /locus_tag="PA0309" CDS complement(350089..350841) /db_xref="GI:15595506" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249000" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAA QKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRK VVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVA ADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQY VNFAESPAGRSYYQAALAALKAGLAVDQAVAP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 350890..351588 /locus_tag="PA0310" CDS 350890..351588 /db_xref="GI:15595507" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249001" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQG WSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGE SEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVS AVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLT GWFRRRNESLLQLS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(351610..352164) /locus_tag="PA0311" CDS complement(351610..352164) /db_xref="GI:15595508" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249002" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGIS LRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLP IFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIG DNSIGRIELRDITDLRGTIKVWGH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 352430..352924 /locus_tag="PA0312" CDS 352430..352924 /db_xref="GI:15595509" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249003" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEV AGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRM AVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGL DAGG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(352927..353619) /locus_tag="PA0313" /gene_synonym="yecS" CDS complement(352927..353619) /db_xref="GI:15595510" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_249004" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="L-cysteine transporter of ABC system YecS" /translation="MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGL ILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGI LALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLS NSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQK ALENRLTAPLRR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: ectoine transport [goid GO:0051470] [evidence IEA]; " gene complement(353691..354461) /locus_tag="PA0314" /gene_synonym="fliY" CDS complement(353691..354461) /db_xref="GI:15595511" /function="Transport of small molecules" /protein_id="NP_249005" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="L-cysteine transporter of ABC system FliY" /translation="MRFLPRLLMLVSLAAPLAHAELLDDVHQRGALRIALEGTYPPFN FKQGGKLTGFETELGELLAAELAVKPEFVTTEWSGILAGLQSGKYDIALNQVSVNEQR RKVFDFSEPYTISSAQLIVRADETRQFKSLEDLKGLKLGVGQGTNYADLAKSVAGVNV RTYPGAPEYLQDLASKRIDAALNDRLLIPFAIREAKLPVKPGAAVGPVANMAIPYRKN NPKFGEALNAALEKIKADGRFAKLSEKWFGLDVSQPPK*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene 354754..355191 /locus_tag="PA0315" CDS 354754..355191 /db_xref="GI:15595512" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249006" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MRVTLPCLGLAALMFGASASLMAADLPRTKAPEGAKVYFITPAD GATVDKTFTVKFGLKGMGVAPAGVDMPDTGHHHLLVDLKEQPAMNLPLPMTDNIRHFG KGQTETEITLPPGKHTLQLLVGDKNHVPLEPTVESEKITVTVK*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(355248..356477) /locus_tag="PA0316" /name="serA" CDS complement(355248..356477) /db_xref="GI:15595513" /function="Amino acid biosynthesis and metabolism" /protein_id="NP_249007" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="D-3-phosphoglycerate dehydrogenase" /translation="MSKTSLDKSKIKFLLLEGVHQNAVDTLKAAGYTNIEYLKTALSG DELKERIADAHFIGIRSRTQLTEEVFDCAKKLIAVGCFCIGTNQVDLNAARERGIAVF NAPYSNTRSVAELVLAEAILLLRGIPEKNASCHRGGWIKSAANSFEIRGKKLGIVGYG SIGTQLSVLAEALGMQVFFYDTVTKLPLGNAVQIGSLHELLGMSDIVSLHVPELPSTQ WMIGEKEIRAMKKGGILINAARGTVVELDHLAAAIKDEHLIGAAIDVFPVEPKSNDEE FASPLRGLDRVILTPHIGGSTAEAQANIGLEVAEKLVKYSDNGTSVSSVNFPEVALPS HPGKHRLLHIHANIPGVMSEINKVFADNGINVSGQYLQTNEKVGYVVIDVDAEYSDLA LEKLQQVNGTIRSRVLF*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: L-serine biosynthetic process [goid GO:0006564] [evidence IEA]; " gene 356681..358075 /locus_tag="PA0317" CDS 356681..358075 /db_xref="GI:15595514" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249008" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MTREALIESLKPLVEPGKLLDDAASLDAYGKDWTKHFAPAPLAI VFPKSVEQVQAIVRWANQHKVGLVPSGGRTGLSAAAVAANGEVVVAFDYMNRILDFNA FDRTVVCQPGVVTKQLQTFAEENGLYYPVDFASSGSSQIGGNIGTNAGGIKVIRYGMT RNWVAGMKVVTGKGDLLELNKDLIKNATGYDMRQLFIGAEGTLGFVVEATMRLERTPK NLTAMVLGTPDFDSIMPVLHAFQSKLDLTAFEFFSDKALAKVLARGDVPRAFETDCPF YALLEFEATTEEVANEALATFEHCVEQGWVLDGVMSQSEQQLQNLWKLREYISETISH WTPYKNDISVTVSRVPAFLKDIDAIVEANYPDFEVVWFGHIGDGNLHLNILKPENLGK DEFFAKCATVNKWVFETVEKYNGSISAEHGVGMTKRDYLTYTRSETEIAYMKALKAVF DPNGIMNPGKIFAE*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: glycolate oxidase activity [goid GO:0008891] [evidence IEA]; " gene 358167..358832 /locus_tag="PA0318" /gene_synonym="hpcE" CDS 358167..358832 /db_xref="GI:15595515" /function="Putative enzymes" /protein_id="NP_249009" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSYQHQYIDGTPIHFPLGKLVCVGRNYAEHAKELNNPVPTEPLL FIKPGSCVVPVSGGLSLPQERGSVHYEAEIAVLIGKPLSRKPNREEVLDAISGYAPAL DLTLREVQAKLKEKGLPWELAKSFDGAGVLSPFVNADQFPDPTDIGIRLTINGEVRQD GNSRDMLNPIVPLIQHIAGHFSLQAGDVVLTGTPSGVGPLNSGDELLLELPGASRFET RVL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 358931..359920 /locus_tag="PA0319" CDS 358931..359920 /db_xref="GI:15595516" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249010" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MPFHGDAQENTWPNSRASPMSLASKLPRFRWLLPAFVVLVGVVL TIVMHWDDRAGLWWKESQASQQQRDESIWLPGYRVVIDAKPLQGLEEEETSDLAYNPA TRTLFTVTGKRPLLVELSLTGDVLRTIPLLGLSNPEGVAVLENGNVAVTDERRNTLTI FHVDPQTAELSTKSLAEFPLGNIGKKNKGFEGIAWDPRQQRLLLSKERDPMTLFSWKS DGGPSLSGAMTALPSDDLYMRNVSALSVDPRTGHTLVLSAESHLLLELDEKGEPVSFI SLLGGFNGLDSKIPRAEGVAIDDEGTIYMVSEPNLFYVFRKKSGERLATSDAD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 359982..360332 /locus_tag="PA0320" CDS 359982..360332 /db_xref="GI:15595517" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249011" /localization_and_confidence="Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="conserved hypothetical protein" /translation="MKLRHLPLIAAIGLFSTVTLAAGYTGPGATPTTTTVKAALEAAD DTPVVLQGTIVKRIKGDIYEFRDATGSMKVEIDDEDFPPMEINDKTRVKLTGEVDRDL VGREIDVEFVEVIK*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(360413..361447) /locus_tag="PA0321" CDS complement(360413..361447) /db_xref="GI:15595518" /function="Putative enzymes" /protein_id="NP_249012" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable acetylpolyamine aminohydrolase" /translation="MLTIYSDDHRLHHGRHELIGGQFTPCFEKPSRADMVLDRVKAVG LGEVRAPRDFGLEPIRRVHSEGFVRFLQNAWQDWLATGRSHDMLPIAWPTRRLRQTEP DNIDGRLGYYSFDAGAPITAGTWQAITSSANVALSGQSELANGARSVFSLCRPPGHHA AADYMGGYCFFNNAAIAAQAFLDRGAGRVAILDVDYHHGNGTQDIFYDRADVLFTSIH GDPRFEYPYFLGYADEKGNGVGTGYNFNYPLAAGSDWATWSQALQAAIRQIQAYAADA LIVSLGVDTFKEDPISQFRLDSPDYLRMGEAIGKLGLATLFVMEGGYAVEEIGINAVN VLQGFEGVHR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(361463..362857) /locus_tag="PA0322" CDS complement(361463..362857) /db_xref="GI:15595519" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_249013" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable transporter" /translation="MASERNNGILIGGKRPEYVHSAQGTGLRRILGLPALVFFGLVYM VPLTMFTTYGVVTEITGGRTASAYLITLAAMLFTAFSYSFMVKKYPIAGSAYSYTSLS FGPCVGFLAGWSLLLDYLFLPMINYLLIGLFLNIAFPMVPAWVFVLAAIGLVTVLNVI GISSVAGMSNVIVGAQFVFAVVFVAMAVKHLAGIPSLDLSLPFVGDGSQPGFAPLMAG AAVLCLSFLGFDAVSTLAEETRDPQRDIPRAIVITTVGAGLLFTVLAVFSQLVFPGSV FQDAESAANEVMLAAGGKFLASFFTAAYVAGAAGSALASQASVSRILYSMGRDGILPR RVFGSLSERFKTPVIAILVVSVISLLAVVIDLTTLASMISFGALVAFSAVNLAVIRSY LLLDGRRAPRDLLRYGLVPAIGLGLTLWLWTSLSALTLVIGLTWFAAGLAYLALHTGG FRRKAPTVTFSEQN*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(363278..364321) /locus_tag="PA0323" CDS complement(363278..364321) /db_xref="GI:15595520" /function="Transport of small molecules" /protein_id="NP_249014" /localization_and_confidence="Periplasmic, Class 2 (primary); Periplasmic, Class 3 (primary)" /product="probable binding protein component of ABC transporter" /translation="MTYRTPLTLLFAAGLALGGQARAEGTLHFANWSDYYPPELLKKF EKDTGIKATLDAYDSNETLLAKLKAGGGAYDVVVPSDSFIEIFVKEGLLQKLDKSQLP SLGNLKENFRTLGFDPGHDYSIPYLWGTTGYSYDTAKVPGGRLEESWKPFFEPPAELK GKVVALNSIEELFIPATYYLGIDECTEDAREAQKVLDLLLRQKPALAMYNSDGTIERM AAGEVAMHQQWNGAFHRAHAQRASLEYVYPKEGIRLFIDNFAIPRDASNVKEAHVFID WMMRPENIAAASNFAKYNNAIVGSEKFMEKALFDDPAINTPQDKLDRLKPFKLCSPKA LALRSKVWTKLKK*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(364369..365157) /locus_tag="PA0324" CDS complement(364369..365157) /db_xref="GI:15595521" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_249015" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MNGRNPLWTFSGVRQAAWLFFAFLYIPILVLVVLSFNSGQSATL WESFSLKWYAVVANDPEILRAAKNSLLVATLATLASTVLATLAALGMRGRAFRGQTLM NGVLGLPLLVPEIVTAVATLMFFSFIGLKLSLFTILIAHIVFCIPFAYLPIRARLEGL DPRLAEAAADLYASPWKAFWKITLPLLMPGVLSGAMLAFIISMDDFVITYFVAGAGAT TLPVYIFSSIRMGISPKINAISSIILMISIAFVALSYYLGQRRR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(365154..366083) /locus_tag="PA0325" CDS complement(365154..366083) /db_xref="GI:15595522" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_249016" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable permease of ABC transporter" /translation="MSTAGRPTAQQSAERRQLRRRLLLSSPAMLMLVLFLVIPLGIMF AVSIQQSGDYGGVKWGQHSLEAYLNFLWERDLDDSLVFNADYLGIFQRSFWLSLLTTL GCLALGFPTALYLALQPERRRNLLLFLVTVPFWTNLLVRVYAWILLLRNGGLVDAGLQ GIGLTDTGLGLLYTDNAVIIGLLYTYLPFMVLPIYSSLEKMDWRLVEAAFDLGANRWK ALRRVIVPLAMPGIVAGCILVFIPALGSYIIPELLGGGKALMIGNLIQLQFGTAHNWP FGAALSFALLAFVLLAMLIYNLRFRANAGGGQP*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene complement(366080..367129) /locus_tag="PA0326" CDS complement(366080..367129) /db_xref="GI:15595523" /function="Transport of small molecules" /protein_id="NP_249017" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="probable ATP-binding component of ABC transporter" /translation="MTSAIAIERICMEFGTPGQGLKALDDVSLDIHANEFFTLLGPSG CGKTTLLRLIAGFEQPSSGSIRLYGEHMEGLPPFRRPVNTVFQSYALFPHMSVADNIG FGLEMQGRPRSEIDATVSRMLDLVKLPEVGKRRADQLSGGQQQRIALARALASRPKVL LLDESLSALDLKLRKEMQIELKRLQHETGITFIFVTHDQEEALTMSDRIAVMSKGKVL QVGTPSDIYEAPLNRAVADFIGETNFLEGQADADGVRLADGQRLAATTPGSGAVTLAI RPERTELAADGQLEGVLENIVYVGTDTVYHLNVAGQPGFRVRQQNRDGARCPHSPGAK VRVRIPAAAIRVLAE*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_component: ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [goid GO:0055052] [evidence IEA]; " gene 367457..368422 /locus_tag="PA0327" CDS 367457..368422 /db_xref="GI:15595524" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249018" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MTIHAQTPEPFSMSRAFTPRRLLLAVLLVALSALVLLGQSFRVF DRAWFAVQEWRHADAWKERSIWLPDYRVRIEAQPIEGLNDDVSALTFDPDRRTLFTVT NQPAQIIELSLQGKVLRTIPLTGFGDAEAIEYISRGVYVITDERQQRLVKVRLEDDTR FIDAADAQQLSLGIGLNGNKGFEGLAYDAEGKRLFVAKERDPVRIYEIHGFPHTQADK PFAVHVVDDPGRDKRLFVRDLSSLQFDEGTGHLLALSDESRLVVELDTDGEPVSTLSL LRGMHGLKRSVPQAEGVAMDDRGVLYLVSEPNLFYVFSKDEPAQP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(368462..370405) /locus_tag="PA0328" CDS complement(368462..370405) /db_xref="GI:15595525" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249019" /localization_and_confidence="Outer Membrane Vesicle, Class 1 (secondary); Outer Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="VFKPLAVAVGLGCAALSLGANAYQYGEYAGETLERLITDYPGRY RGTASFAGASKLMQSRLGFGYQTSRQDFTWAGNRSSQNVIASAPGSSGKFLVLGAHYD TYYGRPTLQGLDDNASGAAVLTEIARNLGGIALENGLEVVGFGAEEEGLRGSRAYVES LDASQRANLLGMINLDSLVTGDKMYAHAGSNSVSNPALGAYREQILRIARELDIPLFT NPGLNAEYPAGTGCCSDGESFNGMDIPVLFIEATNWELGDLDGYEQTDNPAIPGGSTW HDPAEDNKEVLTNALGQERIEQRMRDFSRLLTRLVLEQTNADLLASTASGGALARQME DQLQRQHQALTRLHDRRWLTLLGSNRPVGSFDGEVGAEGEVSPDSGFDMPGNPESRRA GVHLLGDYRYSEALTLGGSLAFQRSRDKLDHGGRIEGDTWQLGLFGLYNDGGPEWLAG ELNLGHTRYDSKRSVYLQAAGGPVLLDQRLSGDTSAWSWGARLEGGYDFSFGELRSGP LAGLDYMHYRIDDFREDEALRTALGYEKQDYDSLEASLGWRLRGELALGARMRLQPYA SLRWVRELADGRLDDMDLTSRGDGRVRVADMGGVDKDFGRAQLGAQLAITEQLGVFAE ANSRFAHSEGNQAGYSLGVNWQF*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: protein secretion by the type V secretion system [goid GO:0046819] [evidence IEA]; " gene complement(370706..371038) /locus_tag="PA0329" CDS complement(370706..371038) /db_xref="GI:15595526" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249020" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MAAKFHLKKAKDGQFHFNLHAANGEIILTSELYKAKDSALGGIE SVRKNSQRDGAFEVKPANNGKFHFVLKATNGQVVGQSQLYASQANAEAGVQSVKRATP EAGLSDES*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(371162..371833) /locus_tag="PA0330" /name="rpiA" CDS complement(371162..371833) /function="Energy metabolism" /product_synonym="phosphoriboisomerase; ribose 5-phosphate epimerase" /protein_id="NP_249021" /note="GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_process: pentose-phosphate shunt [goid GO:0006098] [evidence IEA]; " /db_xref="GI:15595527" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="ribose 5-phosphate isomerase" /translation="MNQDQLKQAVAQAAVDHILPHLDSKSIVGVGTGSTANFFIDALA RHKAEFDGAVASSEATAKRLKEHGIPVYELNTVSELEFYVDGADESNERLELIKGGGA ALTREKIVAAVAKTFICIADASKLVPILGQFPLPVEVIPMARSHVARQLVKLGGDPVY REGVLTDNGNIILDVHNLRIDSPVELEEKINAIVGVVTNGLFAARPADLLLLGTADGV KTLKA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 372091..373605 /locus_tag="PA0331" /name="ilvA1" CDS 372091..373605 /function="Amino acid biosynthesis and metabolism" /product_synonym="threonine deaminase" /protein_id="NP_249022" /note="GO_function: phosphoenolpyruvate carboxykinase (ATP) activity [goid GO:0004612] [evidence ISS]; GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: glycine metabolic process [goid GO:0006544] [evidence ISS]; GO_process: L-serine metabolic process [goid GO:0006563] [evidence ISS]; GO_process: threonine metabolic process [goid GO:0006566] [evidence ISS]; GO_process: isoleucine biosynthetic process [goid GO:0009097] [evidence IEA]; " /db_xref="GI:15595528" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="threonine dehydratase, biosynthetic" /translation="MLEQYVKKILTSRVYDVAVETPLQPARQLSERLGNQVLLKREDL QPVFSFKIRGAYNKVAQLTEEEKARGVIAASAGNHAQGLALAAKRQGIRAVIVMPKTT PEIKVQAVRAHGAKAVLHGDAFPEALAHALKLVDEKGYTFVHPYDDPDTIAGQGTVAM EILRQQPGRLDAIFVPVGGGGLVAGIAAYVKYLRPEIKVIGVEPDESNCLQAAMAAGE RVVLGQVGLFADGVAVAQIGQHTFDICKDHVDEVITVSTDEICAAIKDIYDDTRSITE PAGALAVAGIKKYVERERAEGQTLVAIDSGANVNFDRLRHVAERAELGERREAIIAVT IPERPGSFKAFCEAVGKRQITEFNYRYHSGSEAHIFVGVQTHPENDPREALVAYLREK GFPVLDLTDNELAKLHIRHMVGGHAVKVSDEMVFRFEFPERPGALFNFLTKLGGRWNI SMFHYRNHGAADGRVVAGLQVPEDERHLIPQTLEAIGYPYWDETANPAYQLFLG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 373725..374192 /locus_tag="PA0332" CDS 373725..374192 /db_xref="GI:15595529" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249023" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MEHFLQIKILHGVATVLLFGGLLGLAFYAWRSWRTGDAARVARG FKRVRLIGWPLLGLSLLALPVSGWWLVHLAGWPLGQSWLLFGACLYLLGCIFWLVLAG RLARVQHQAGAAETAGAALGEQTLREIKVGLVMALLGAASFIAVAVLMVSKPL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 374243..375514 /locus_tag="PA0333" CDS 374243..375514 /db_xref="GI:15595530" /function="Putative enzymes" /protein_id="NP_249024" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MRILLVGAGGFVGRHLLPALLAAGHELLLTARRPPVDAPAGVRW LALDLERLAERPDSFAWPAGVDLLINAAGTMSLDEASMARVQDSGARTLFDLAAAHGA KVLQISALGAGAHPDVAFLASKAAADRHLLELGIPALVLRPSLLLGPGGASSAWLERL SPLPLIPLLDNRARLQPLHVEDLVGAVLALLRCWPERAQVIPLVGPQALTQGELLDEL RRAQGWPRGRYVVPPAALLDALGGLGRRAGWRTLSPSMLKLVRHDNLADPALLDEACG YRCAPLASRLLGWPQAARSLAALMRPLMLAALVLIWLGTLVACLGPGYGWGLRILGEA GIHGWPASLAVIAGALLDGALGVGLLLRRWRRRALLAQFWLMLGYSLAISLILPHYWY DPYMAVGKNIVLMVATLWLLGDEPRTREARG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(375951..377189) /locus_tag="PA0334" CDS complement(375951..377189) /function="Membrane proteins; Transport of small molecules" /product_synonym="probable MFS transporter" /protein_id="NP_249025" /db_xref="GI:15595531" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable major facilitator superfamily (MFS) transporter" /translation="MPHTPAPGSLRPVVIVALVTALCLAGDSMLYIALPIYWHEVGLE ALWQVGVLLSINRLIRLPFNPLIGRLYKHLALKTGLLLAVVIGVLSTAGYGLASGFLA WVLLRGLWGIGWSFFRIGGLSAVVYCAADHQRGHAMGLYNGLYRLGSLVGMLLGGLLV PVLGLPALALSFALLALLGLPLLAKGFDLPENPAGHARTSAATASTSVARRPPPRGLV ILSGFATALLIQGVLAATLSALIARSFGTEVSLLGLALSAAGLSGIIQALRWSWEPWL AGRFGAWSDGPRGRRRFYVAALLVGAMGFGLLSSRLPILAWLAIALLVMLVATALTTL TDALAADVARAGDVVGFMTRYSIVQDLGAALGPALAFLLLERPGGFAWLYWGGSLAFL VLALLWLRRADPQTGLLTIR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(377239..377892) /locus_tag="PA0335" CDS complement(377239..377892) /db_xref="GI:15595532" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249026" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="VRLALFDLDNTLLAGDSDHSWGEWLCQRGLVDAAEYQARNDAFY ADYVAGKLDVLAYQAFTQAILGRTEMAQLETWHRQFMQEVIEPIVLAKGEALLAEHRA AGDRLVIITATNRFVTGPIAERLGVETLIATECEMRDGRYTGQTFDVPCFQGGKVVRL QRWLDENGLDLEGASFYSDSLNDLPLLEKVSRPVAVDPDPRLRAEAEKRGWPIISLR* " /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: hydrolase activity [goid GO:0016787] [evidence IEA]; " gene 378096..378575 /locus_tag="PA0336" /name="ygdP" CDS 378096..378575 /function="Nucleotide biosynthesis and metabolism" /product_synonym="dinucleoside oligophosphate pyrophosphatase" /protein_id="NP_249027" /note="GO_process: nucleotide metabolic process [goid GO:0009117] [evidence ISS]; GO_function: catalytic activity [goid GO:0003824] [evidence RCA]; GO_process: metabolic process [goid GO:0008152] [evidence RCA]; GO_function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [goid GO:0016818] [evidence IEA]; " /db_xref="GI:15595533" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="Nudix hydrolase YgdP" /translation="VIDSDGFRPNVGIILANEAGQVLWARRINQEAWQFPQGGINDRE TPEEALYRELNEEVGLEAGDVRILACTRGWLRYRLPQRLVRTHSQPLCIGQKQKWFLL RLMSDEARVRMDITSKPEFDGWRWVSYWYPLGQVVTFKREVYRRALKELAPRLLARD* " /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 378598..380877 /locus_tag="PA0337" /name="ptsP" CDS 378598..380877 /function="Transport of small molecules" /product_synonym="phosphotransferase system enzyme I" /protein_id="NP_249028" /note="GO_process: transport [goid GO:0006810] [evidence ISS]; GO_function: phosphoenolpyruvate-protein phosphotransferase activity [goid GO:0008965] [evidence RCA]; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid GO:0009401] [evidence RCA]; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid GO:0009401] [evidence IEA]; " /db_xref="GI:15595534" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="phosphoenolpyruvate-protein phosphotransferase PtsP" /translation="MLNTLRKIVQEVNSAKDLKAALGIIVQRVKEAMGTQVCSVYLLD TETQRFVLMATEGLNKRSIGKVSMAPSEGLVGLVGTREEPLNLENAAAHPRYRYFAET GEERYASFLGAPIIHHRRVMGVLVVQQKERRQFDEGEEAFLVTMSAQLAGVIAHAEAT GSIRGLGKLGKGIQEAKFVGVPGAPGVGVGKAVVVLPPADLEVVPDKQVDDIDAEIAL FKQALEGVRADMRALSSKLASQLRKEERALFDVYLMMLDDASIGNEVKRIIRTGQWAQ GALRQVVMEHVQRFELMDDAYLRERASDVKDIGRRLLAYLQEERKQNLTYPEQTIIVS EELSPAMLGEVPEGRLVGLVSVLGSGNSHVAILARAMGIPTVMGAVDLPYSKVDGIDL IVDGYHGEVYTNPSAELVRQYSDVVAEERELSKGLAALRELPCETLDGHRMPLWVNTG LLADVARAQERGAEGVGLYRTEVPFMINDRFPSEKEQLAIYREQLSAFHPLPVTMRTL DIGGDKALSYFPIKEDNPFLGWRGIRVTLDHPEIFLVQTRAMLKASEGLDNLRILLPM ISGTHELEEALHLIHRAWGEVRDEGVDIAMPPIGMMVEIPAAVYQTRELARQVDFLSV GSNDLTQYLLAVDRNNPRVADLYDYLHPAVLHALKKVVDDAHLEGKPVSICGEMAGDP AAAVLLMAMGFDSLSMNATNLPKVKWLLRQITLDKARDLLGQLLTFDNPQVIHSSLHL ALRNLGLGRVINPAATVQP*" /product_name_confidence="Product name confidence: Class 1: Function experimentally demonstrated in same species." gene 380903..382033 /locus_tag="PA0338" CDS 380903..382033 /db_xref="GI:15595535" /function="Hypothetical, unclassified, unknown; Motility & Attachment" /protein_id="NP_249029" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="VRRLRFPRKRIDCLPFGRGHWPVERARDCRKMDERASKPPGLLP LSREDLEKTLRYALEIVSDGIWDWNIATNQVSRSAGWYLMLGYPPHSLPESVETWKSI IHPEDYPRVMASFQAYLDGESPEYCEEYRCRTYSGDYLWISDRGRFVEFDERGEPRRM IGAHHEIHQRKLVELELQQRNEELFDWNLRLEELVAERTEALHRVNQALASKMAEAQR LSEIDPLTELYNRRKFEQCLHHEWMRRQRHGRATALVMIDVDHFKRINDLFGHSTGDR VLVAFGRLVASELREVDVLARWGGEEFILLLPETGLEAAAALAERLRQRVRSQSFEMG ERLTASFGVGVLNDGETLDLLLCRVDDALYRAKQRRDCVACC*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: cyclase activity [goid GO:0009975] [evidence IEA]; " gene complement(382037..382792) /locus_tag="PA0339" CDS complement(382037..382792) /db_xref="GI:15595536" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249030" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MCLIVFAWQPGHALPLLVAANRDEFYARPSLPLAAWEDAEGVFA GRDLEAGGTWLGLGPAGRFAALTNVRDPSQALGKRSRGELVADFLRGGGNPADYLAQV AGRAADYSGFNLLIGDRHQLWHYNPRVGPPRLLPAGIYGLSNAALDTPWPKLLKARAA LAERLAEPHPQALLELLADAAPAADGQLPDTGVGLATERLLSSVFIASPSYGTRASSV VRVHADGTREMIERSFGPSGARLGEVSLVLPPG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 382914..383717 /locus_tag="PA0340" CDS 382914..383717 /db_xref="GI:15595537" /function="Membrane proteins" /protein_id="NP_249031" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MEFLLYIVLGACAGVLAGLFGVGGGLIIVPALVFSFTAHGFGGD VLTQMAVGTSLATIVFTSINSILEHHRRGAVRWPVFAWMTLGILIGSALGALTAAQIK GPLLQKIIGVFAILVALQMVLDLKPKGSREVPGKGGLTLAGAVIGWASAIFGIGGGSL TVPFLSWRSVPMQQAVATSSACGLPIAISGALSFIAVGWHNPQLPEWSLGYVYLPALV GIAATSMLFARFGARLAHRLSPRVLKRLFALLLFSVGISFLTPDLAFLS*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 383727..384527 /locus_tag="PA0341" /gene_synonym="umpA" /name="lgt" CDS 383727..384527 /db_xref="GI:15595538" /function="Translation, post-translational modification, degradation; Fatty acid and phospholipid metabolism" /protein_id="NP_249032" /localization_and_confidence="Cytoplasmic Membrane, Class 2 (primary); Cytoplasmic Membrane, Class 3 (primary)" /product="prolipoprotein diacylglyceryl transferase" /translation="MLTYPQIDPVALAIGPLKIHWYGLMYLIGIGGAWLLASRRMKRF DPTWTKERLSDLVFWVACGVILGGRLGYVLFYNLDEYIANPTLIFEVWKGGMSFHGGL LGVMLAVWWFGKRHGKSFFQLMDFIAPLVPIGLGAGRIGNFINSELWGKVSDVPWAMV FPNGGPLPRHPSQLYQFALEGVALFVILWLFTRKPRPTASVSGLFVLCYGIFRFVVEF VRVPDAQLGYLAWGWLTMGQVLCVPMVLAGIALMVWAYRRDAAQPKAA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular lipid metabolic process [goid GO:0044255] [evidence ISS]; GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; GO_component: integral to membrane [goid GO:0016021] [evidence IEA]; " gene 384733..385527 /locus_tag="PA0342" /name="thyA" CDS 384733..385527 /db_xref="GI:15595539" /function="Biosynthesis of cofactors, prosthetic groups and carriers; Nucleotide biosynthesis and metabolism" /protein_id="NP_249033" /localization_and_confidence="Cytoplasmic, Class 2 (primary); Cytoplasmic, Class 3 (primary)" /product="thymidylate synthase" /translation="MKQYLDLMRHVREHGTFKSDRTGTGTYSVFGHQMRFDLAAGFPL VTTKKCHLKSIVHELLWFLKGSTNIAYLKEHGVSIWDEWADENGDLGPVYGYQWRSWP APDGRHIDQIANLMAMLKKNPDSRRLIVSAWNPALIDEMALPPCHALFQFYVADGKLS CQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLQPGEFIWTGGDCHLYANHLEQADL QLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYEAHPHIKAPVAV*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cofactor biosynthetic process [goid GO:0051188] [evidence ISS]; GO_process: nucleotide metabolic process [goid GO:0009117] [evidence ISS]; GO_function: thymidylate synthase activity [goid GO:0004799] [evidence RCA]; GO_process: 2'-deoxyribonucleotide biosynthetic process [goid GO:0009265] [evidence RCA]; GO_process: 2'-deoxyribonucleotide biosynthetic process [goid GO:0009265] [evidence IEA]; " gene complement(385554..386351) /locus_tag="PA0343" CDS complement(385554..386351) /db_xref="GI:15595540" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249034" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MPFVSYAQNLEDVRLWRALKLFPRGFYIDVGANHPRIDSVTLAF YERGWRGINIEPLPHLHRELERERPEDLNLNLAIGEREGRATLYEMAASGLSTLDPEL ARQRQAEGCTATPREVKVSTLDAICAAHVEGPIHFLKIDVEGLEGAVLRGLDLNRWRP WLILAETPFDHDPEWKAPLLAAGYRFVHFDGLNGYYLAEEQARLEGAFALPPNLLDDF QLCHGHAMSHPVAPLEQALEQALQRAEDAERALRDWRALPWYRRLFG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(386386..387765) /locus_tag="PA0344" CDS complement(386386..387765) /db_xref="GI:15595541" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249035" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="hypothetical protein" /translation="MTEPLILAVVGHTNTGKTSLLRTLTRDRGFGEVSHRPSTTRHVE GARLSVDGEALLELYDTPGLEDAIALLDYLDALERPGERLDGPERMARLLDSNEARGR FEQEAKVVRQLLASDAGLYVIDAREPVLAKYRDELAVLTGCGRPLLPVLNFVASPQHR EEEWRAALARLGLHALVRFDSVAPPLDGERRLYESLALLLERARPQLDRLIADHETQA AARLRAGQRLIAELLVDVAACRRLVPGGESAVQEATRDLHQQVRKREQACVEALLRLY AFARDDARAADLPLLDGRWGDDLFNPETLRQLGIRLGGGVAAGAAAGAGIDLLVGGVT LGAAAALGALAGGAWQTVGHYGSRLLGKLKGARELTVNDAVLRLLALRQRQLLAALQT RGHAAVEAIRLETPEDKQWREGKLPEALRKARAHPEWSSLNGRRVGGSDRQEQIDALA ELLESGRGE*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: GTP binding [goid GO:0005525] [evidence IEA]; " gene complement(387758..389143) /locus_tag="PA0345" CDS complement(387758..389143) /db_xref="GI:15595542" /function="Hypothetical, unclassified, unknown; Membrane proteins" /protein_id="NP_249036" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="LSHTTHPGLDALWLTEAVRLREEQAGPLEDSEAVRQALAQGGSL PRRILTRAHWLGRREGLLDALRTWRQGSRLALALLLVLALASGAGLAFAALGDGQRPV NVFWALASLLGLHLLTLLGWALGLLAGGEAAGALGRLWLWLSGKLARDARAAHLAPAL LVLLGRRRLARWGLGALVHGLWLLGLLTALAMLLGLLATRRYGFVWETTILGSDTFIA LTQALGALPALLGFPLPDAELIRASGDAALASEAARHAWAGWLVGVLLVYGVLPRALL GLLCLWRWKRGLAHLDLDLDDPGYSLLRERLMPASERLGVSDAAPDWLPEPQGGQSGQ EAAGAVLVAVELDDRRPWPPKLAEGVADAGILDDGQQRRRLLEQLTRYPPARLAIACD PRRSPDRGTLALLGELARCAASTRIWLLQAPPGEALDSDRLGDWHAALERLQLPHGET SPLAWLETGHD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 389334..389696 /locus_tag="PA0346" CDS 389334..389696 /db_xref="GI:15595543" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249037" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MKVVRRYPLALLLGMAGALADELPDGSLLQRYGVQADQLPTLAA DPPSRKEEKETPSRFRVEPEQPLVTFGVKDHKGMEPTGNPSIDAMHERDRRICRNIRR QALEKGKAQPFDGYIECP*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(389733..390884) /locus_tag="PA0347" /name="glpQ" CDS complement(389733..390884) /function="Fatty acid and phospholipid metabolism" /product_synonym="glycerophosphodiester phosphodiesterase" /protein_id="NP_249038" /note="GO_process: cellular lipid metabolic process [goid GO:0044255] [evidence ISS]; " /db_xref="GI:15595544" /localization_and_confidence="Periplasmic, Class 3 (primary)" /product="glycerophosphoryl diester phosphodiesterase, periplasmic" /translation="MQPAFLRRHLGAACLMLAAGLASAAHADTGNVQRAIDWAQGQAS VRHPASDERSPLVIAHRGASGYVPEHTLGAYALAVMMGADYVEPDLVMTRDGKLVARH DNELGLTTDVAQHPEFADRKRTQKVDGVELTGWFSEDFTLAELKTLRAIERIPTIRPG NARLDGTFEIPTLQEIIDLVKSLQISQQRTIGLYPEIKHGTHFQRLGLAMERPLVKTL HRNGYLGPRAPVFIQSFEVNNLKELKRLTGIRLVQLYGSGQPYDQQAAGGSLTYAEMA TAKGLRQVARYAYGVGPDKSYVIPRDANGNLGQPTRFVGDAHAAGLKVHPYTFRAENS FLPAEFRSADGNPQSRGDLAGEIRAYLDAGIDGLFSDQPDVAVRLREQR*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 391094..392188 /locus_tag="PA0348" CDS 391094..392188 /db_xref="GI:15595545" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249039" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MASAQPASAFPCLSLQLACLLLGAWLAFDAHGGGQAVAPPARVE ARVPTAATDDWGRQPDSLMSAVPPRTLEASVGARGSGSASSRLWIADTDFRLHDDIGF FIQRMLIRMEPTRPGAPLSLDDPTAMVARIQAGEIFVSDATLATLLNQDLAASRAAVR NLSMNTRKDGQEVRGELLRKGRWRPLRMLTEIELSGPLEVTLVPRRIFVDGVEVTSSL AAASIEMSEVLKLKTRHMELVGNRIRVDLDGLFPPPRLDFRVSRLALADGGMQLALGD SLADLQWPALRAPDSYMFIEGGDIKMARTVLVKAYALFTSLSPGQPLLFNLYDYRRQL QNGVIRLREDGMVQIAVSPVKAPAPLEARL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 392185..393225 /locus_tag="PA0349" CDS 392185..393225 /db_xref="GI:15595546" /function="Membrane proteins" /protein_id="NP_249040" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VSRRPWGVLLGCCLLAASAAQAESAIDRQQRELALLREGWYRQV PPAPVPLPMRTAGPADSGQDGVGILLRNVDMYLRGNIGFHVPEVKGWLVPNRAGQPVD FDRPQDMHFQVMEGEVLLSPRQLANLFNEHILAYDGTMLKDFRMSSAAGRLEVEGRVR PLGVGPWLPLRLGGGVEVDAASGALVYRPDQLRVIGLPLYGAMSLVGLPMSALVSLDR PGASLVGSAMRLDYRKVFPLLGIDGHVQEAWLDDQGLHLRFSQAPGQPSPVFSPPAAA GPSFLWLQSGDLKIFEILITYAQVLLKTETPDQVLTFNLQDYRKVLATGTTQVNEDGT FFMQVPPYANPL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 393308..393814 /locus_tag="PA0350" /gene_synonym="tmrA" /name="folA" CDS 393308..393814 /db_xref="GI:15595547" /function="Biosynthesis of cofactors, prosthetic groups and carriers" /protein_id="NP_249041" /localization_and_confidence="Unknown, Class 3 (primary)" /product="dihydrofolate reductase" /translation="MARPLAMIAALGENRAIGIDNRLPWRLPADLKHFKAMTLGKPVI MGRKTWDSLGRPLPGRLNLVVSRQAGLALEGAEVFASLDAALARAEAWAQAEDADELM LIGGAQLYAEALPRAARLYLTRVGLAPEGDAFFPEIDGAAWRLASSIEHAAADDAPAY AFEVWERR*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cofactor biosynthetic process [goid GO:0051188] [evidence ISS]; GO_process: folic acid and derivative metabolic process [goid GO:0006760] [evidence RCA]; GO_function: dihydrofolate reductase activity [goid GO:0004146] [evidence RCA]; " gene complement(393830..394303) /locus_tag="PA0351" CDS complement(393830..394303) /db_xref="GI:15595548" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249042" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MPQSRRPLRIGLIADTHGLLRPEALERLRGCDQLIHAGDIGKPE ILAELERLAPLSVVRGNNDTQDWAADIPERLLLKIGRLTLYVLHDLKRLDLDPAAEGI DVVVAGHSHKPLKEERDGVLYLNPGSAGPRRFSLPIGIGVLEVAGKKIEAELITL*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_function: hydrolase activity, acting on ester bonds [goid GO:0016788] [evidence IEA]; " gene complement(394442..395827) /locus_tag="PA0352" /gene_synonym="yicE" CDS complement(394442..395827) /db_xref="GI:15595549" /function="Membrane proteins; Transport of small molecules" /protein_id="NP_249043" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="probable transporter" /translation="MSSLQSPSDASARNDLVYGLDDRPSAPIALLAALQHLLAIIVPI VTPGLLICQALGVSPRDTNLIVSMSLVISGIATFVQCKRFGPFGAGLLIVQGTSFNFV GPLIAGGALMVKQGTPVESVMAAIFGVVIAGSFVEMGISRILPFVKRLITPLVTGIVV LMIGLTLIKVGLISMGGGFSAMSNGTFANGENLLLSGVVLGIIVVLNRIPVVWMRSCA IVIALAVGYALAGYLGRLDFTGMHQAELFQVPTPLHFGLDFSWPLFIPMLVIYLVTSL EAIGDVTATSKVSKQPVEGPLWMQRIKGGVLVNGANSFLAGIFNTFPSSVFAQNNGVI QLTGVASRYVGLWIAAMLVLLGLFPSVAGVIQAVPEPVLGGAAMVMFGAVAASGINIL AGIQLDRRALLIIAVSLALGLGVSQVPEFLAHMPAALRNVLESGVATGGICALLLNWF LPESPVQKAGH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: xanthine transmembrane transporter activity [goid GO:0042907] [evidence IEA]; " gene complement(396057..397895) /locus_tag="PA0353" /name="ilvD" CDS complement(396057..397895) /db_xref="GI:15595550" /function="Biosynthesis of cofactors, prosthetic groups and carriers; Amino acid biosynthesis and metabolism" /protein_id="NP_249044" /localization_and_confidence="Periplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="dihydroxy-acid dehydratase" /translation="MPDYRSKTSTHGRNMAGARALWRATGMKDEDFKKPIIAIANSFT QFVPGHVHLKDLGQLVAREIEKAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIAD SVEYMVNAHCADAIVCISNCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLASHGL DLVDAMVVAADDSCSDEKVAEYERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGS TLATHADREQLFLRAGRLAVELCQRYYGEGDDSVLPRNIANFKAFENAMTLDIAMGGS TNTILHLLAAAQEAEVPFDLRDIDRLSRKVPQLCKVAPNIQKYHMEDVHRAGGIFSIL GELARGGLLHTDVPTVHSPSMADAIAQWDITQTRDEAVHTFFKAGPAGIPTQTAFSQN TRWPSLDDDRAEGCIRSVEHAYSKEGGLAVLYGNIALDGCVVKTAGVDESIHVFEGSA KIFESQDAAVKGILGDEVKAGDIVIIRYEGPKGGPGMQEMLYPTSYLKSKGLGKQCAL LTDGRFSGGTSGLSIGHASPEAAAGGAIGLVQDGDKVLIDIPNRSINLLVSDEELAAR RAEQDKKGWKPAAPRARRVSTALKAYALLATSADKGAVRNKALLDG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: amino acid metabolic process [goid GO:0006520] [evidence ISS]; GO_process: cofactor biosynthetic process [goid GO:0051188] [evidence ISS]; GO_process: valine biosynthetic process [goid GO:0009099] [evidence IEA]; " gene complement(398224..399420) /locus_tag="PA0354" CDS complement(398224..399420) /db_xref="GI:15595551" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249045" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MTLPSLRLKANAERRLRAGHLWVYSNEVDVAATPLNAFAAGDQA VLEMANGKPLGIVALSPNNLICGRLISRDTKHVLDKSLLVHRINIALSLRERLFDKPF YRLVYGDSDLLPGLVVDRFGDVLVVQLASAAMELRKDEVLAALLQVLKPAAVLWKNDS SARDAEGLERYVANAYGEVPEWVALEENGVKFEAPVLAGQKTGWFYDHRMNRARLAPY VQGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGVAEKVACVE GDVFEALRELKAADERFDVVIADPPAFIKRKKDLKNGEAAYRRLNEQAMRLLSKDGIL VSASCSMHLPEDDLQNILIGSARHLDRNIQLLERGGQGPDHPVHLAIAETRYIKSLTC RLLPNG*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: peptidyl-glutamine methylation [goid GO:0018364] [evidence IEA]; " gene complement(399493..400032) /locus_tag="PA0355" /name="pfpI" CDS complement(399493..400032) /db_xref="GI:15595552" /function="Translation, post-translational modification, degradation" /protein_id="NP_249046" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="protease PfpI" /translation="MTQSLHGKVVAALVTDGFEQVELTGPKKALEDAGATVRILSDKA GEVRGWNHHQPAEAFRVDGTFEDASLDDYDALLLPGGVINSDQIRSLAKAQELAIRAE QASKPVAVICHGAWLLISAGLVQGRTLTSWPSLKDDINNAGGHWVDQEVAVDGKLVSS RKPEDIPAFNRRFIEILAG*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: cellular protein metabolic process [goid GO:0044267] [evidence ISS]; GO_function: cysteine-type peptidase activity [goid GO:0008234] [evidence IEA]; " gene 400248..401072 /locus_tag="PA0356" CDS 400248..401072 /db_xref="GI:15595553" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249047" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VPPQPQIMVDLQMEQVMPNPDLKNIARLISQDPGLSGALLKLVN SPFFGLANRITSIQRAVNLLGSRSVINLINAQSIKGEMSDDTIVTLNRFWDTAQDVAM SCLSLAKRIGYESVDEAYALGLFHNCGIPLMLKRFPHYMAVLEEAYAAASDERRVVDT ENRVLNTNHAVVGYYTARSWRLPEHVCEAIANHHNALSIFGDESARDTQLKNLLAILK MAEHICGSHRVLGNQPEDHEWNSIGALVLDYVGLTDYDFENLKGSILELGVGQGSY*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 401131..401943 /locus_tag="PA0357" /gene_synonym="fpg" /name="mutM" CDS 401131..401943 /db_xref="GI:15595554" /function="DNA replication, recombination, modification and repair" /protein_id="NP_249048" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="formamidopyrimidine-DNA glycosylase" /translation="MPELPEVETTRRGIAPYLEGQRVERVIVRERRLRWPIPEDLDVR LSGQRIVSVERRAKYLLLGAEAGTLISHLGMSGSLRLVESGTPASRHEHVDIELASGM ALRYTDPRRFGAMLWSLAPLEHELLRNLGPEPLTDAFAGQRLFELSRGRSMAVKPFIM DNAVVVGVGNIYASEALFAAGIDPRKPAGSISKARYLRLAEEIKRILAIAIERGGTTL RDFVGGDGQPGYFQQELFVYGRGGEFCKVCGSTLREIRLGQRASVYCPRCQR*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: DNA metabolic process [goid GO:0006259] [evidence ISS]; GO_function: oxidized purine base lesion DNA N-glycosylase activity [goid GO:0008534] [evidence IEA]; " gene 402020..402598 /locus_tag="PA0358" CDS 402020..402598 /db_xref="GI:15595555" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249049" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MSGNYLPRNTLVESLGHAMLKLSGWKIEGQLPALDKFVVIGAHH TSNWDFVAFLAAKFVLRLNARWFGKHTLFNGPLGGLMRRWGGIPIQRHLKLNTVDQAI QAFREHREFMLIIAPEGTRKKVDRWRMGFYHIARGAGVPVVPAALDYENRRIVIGEPF WPTGNEDADLCSLIGFYRPFIPKKPHYAFLGD*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 402681..403025 /locus_tag="PA0359" CDS 402681..403025 /db_xref="GI:15595556" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249050" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MNLFRTTALVLALTTGLSSMPALADAVQENASGDPMYTVEAPPA YAMIGDLLIARPFLIAATAVGAVAFVVSLPFTAASGSVGKAGQALVVDPGKEAFVRCL GCTTSGYNHDES*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene 403295..404281 /locus_tag="PA0360" CDS 403295..404281 /db_xref="GI:15595557" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249051" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="MFSQWVFLSVLALAVPSFAWAEDAVSDLAREQSKAEQGDKRGDE LFAEFTRLRQAAETGEPQALFDFGAYFYQQQNYASAREWWGKAAAAGMVRAQIQLAML YRDGDGGPQDKTEAARWFRKAAEQGDAAAQNEMGVLYWRGEGVDQDRVKAGTWFERAA ASGSEDAETNLGWFYLDDSQGVYSATSDEEAALLDRYAGSREKAFQWFCKAATQGDAR AQFKVGEAYWNGSGAGMNKLQARLWLEKAAQQQDADAIAWLESAANAAWYTRLENWIH AALDGELSGVADCSGAADRRHSGRGMEGAPSDPEAVEASAEDAQQAVEAASQ*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(404386..406119) /locus_tag="PA0361" CDS complement(404386..406119) /db_xref="GI:15595558" /function="Amino acid biosynthesis and metabolism" /protein_id="NP_249052" /localization_and_confidence="Periplasmic, Class 2 (primary); Periplasmic, Class 3 (primary)" /product="probable gamma-glutamyltranspeptidase precursor" /translation="MSFLNLPVRTLVAACGLSLLSLAAHADSFRGDAHAPQQAAVATP HPAATVAGLETLANGGNAFDAAAAIAAALAVAEPYGSGLGGGGFFLLRQAGAQPTYRF LDARERAPKAAYADMYRRNGKVDPRLSVDGPLAAAIPGLPAALVELSSRYGRKPLADN LVPAIRLAVDGVSVDRIYRDRAAMRLEAMRKDPETARIFLDKGGIPDEWNLLRQPQLA RTLERLGRYGRIGFYEGETADKLLTGVRAGGGIWSAADLRDYRVIERRPLEVKLANGR ELISAPPPSAGGVALAQSLQMLEQLPWQKAEPVQRAHYVLEVLRRAYRDRGLLGDPDF VANPLPSLLAPDYLKRLAAGIDPRRATPSSALPEAPAWREGDHTTHFAVIDAQGNAVA ATLSVNLPFGAAFTVPDTGVVLNNEMDDFAADTQGANSYGLAGSQANAVAAGKRPLSS MSPSFLESPTDFAAFGTPGGSRIPSMVLISMLQYFDGRPVGQWVAAPRYHHQYKPDVV EYEPRAFSDAEAAELRRRGYQLKRLERSYGNQQVLYWDKRSGRVDAASDPRGIGYSSL SLEAQAQPRPH*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: glutathione biosynthetic process [goid GO:0006750] [evidence IEA]; " gene complement(406247..406498) /locus_tag="PA0362" /name="fdx1" CDS complement(406247..406498) /db_xref="GI:15595559" /function="Energy metabolism" /protein_id="NP_249053" /localization_and_confidence="Unknown, Class 3 (primary)" /product="ferredoxin [4Fe-4S]" /translation="MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGH YDEPQCQQVCPVDCIPLDDANVESKDQLMEKYRKITGKA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " /note="GO_process: generation of precursor metabolites and energy [goid GO:0006091] [evidence ISS]; GO_function: electron carrier activity [goid GO:0009055] [evidence RCA]; GO_process: oxidation reduction [goid GO:0055114] [evidence IEA]; " gene complement(406619..407098) /locus_tag="PA0363" /gene_synonym="kdtB" /name="coaD" CDS complement(406619..407098) /function="Central intermediary metabolism" /product_synonym="PPAT" /protein_id="NP_249054" /note="GO_process: metabolic process [goid GO:0008152] [evidence ISS]; GO_process: coenzyme A biosynthetic process [goid GO:0015937] [evidence IEA]; " /db_xref="GI:15595560" /localization_and_confidence="Cytoplasmic, Class 1 (primary); Cytoplasmic, Class 3 (primary)" /product="phosphopantetheine adenylyltransferase" /translation="MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPL FSLEQRVALAQEVTKHLPNVEVVGFSTLLAHFVKEQKANVFLRGLRAVSDFEYEFQLA NMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR* " /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene complement(407250..408845) /locus_tag="PA0364" CDS complement(407250..408845) /db_xref="GI:15595561" /function="Putative enzymes" /protein_id="NP_249055" /localization_and_confidence="Unknown, Class 3 (primary)" /product="probable oxidoreductase" /translation="MPVPDLFAEGLARGWKTYNGSRLDDDLELEADVVVVGTGAGGGT TAEILSAAGLKVLLVEEGPLKTSSDFKMQEADAYPELYQEGIGRMSKDGAITILQGRA VGGTTLINWTSSFRTPEPTLQHWAQVYGVKGHSAEDMAPWFEKMEQRLHVAPWALPPN ANNDVIRLGCEKLGYHWKVIPRNVLGCWNLGYCGMGCPVNAKQSMLVTTIPATLDKGG ELLYLARANRLLLDGDKVTGLECLGMDERCVAPNGRRIRVRARHYVLSGGGINTPAIL LRSKAPDPSQRVGKRTFLHTVNFSAGLFDRVINPFYGAPQSIYSDHFQWDDGVTGRMS YKLEVPPLQPSLASVLLGGFGSDNALRMEQLPHTNMMLALLRDGFHPDSAEGSVGLRG DDTPVLDYRMTDYTWDGIRRAFHTMAEIQFAAGAREVRPVHSDARSAKNLQEARGIID GLRLEIYRTRLGSAHVMGGCAMGEDPAVAVADSLGRHHHLRNLSIHDGSLFPTSIGAN PQLSVYGLTAQLASALAERLARA*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(408901..409449) /locus_tag="PA0365" CDS complement(408901..409449) /db_xref="GI:15595562" /function="Membrane proteins" /protein_id="NP_249056" /localization_and_confidence="Cytoplasmic Membrane, Class 3 (primary)" /product="hypothetical protein" /translation="MSDTTLESAGLSRRSLMKVGLIGGAFLATAGVTASLTGCSAEKP ASGLEKVRESDLPFLRALLPVMLLGAVSAEQMPKAVEGAIQSLDHNLARLSPEMFKLT QQLFDVLALPLTRGPLTGIWGSWENASGDDVRAFLSRWENSFIGLLRMGHSSLMQLAM MAWYARPEAWAHCGYPGPPKIA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(409504..410934) /locus_tag="PA0366" CDS complement(409504..410934) /db_xref="GI:15595563" /function="Putative enzymes" /protein_id="NP_249057" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable aldehyde dehydrogenase" /translation="MVADIAYLQQSQQEINQLEALFARQRAAYLAQPMPDATQRVQWL KALRDLLFKEQQALIEAIDRDFSARSADETLLAEIMPSLHGIHYAAKRVKKWMKPARR AVGLQFQPASAQVVYQPLGVVGVIVPWNYPLFLSIGPLTGALAAGNRVMIKMSESTPA TGRLLKDLLARIFPEDQVAVVLGEVDVGVAFSKLPFDHLLFTGATSVGKHVMRAAAEN LTPVTLELGGKSPAIVSDSVPMKDAAERIAFGKSLNAGQTCVAPDYVLVPSRRVEEFV SQYKEVVQGFFPRLSDNPDYTAIINERQLGRLRGYLDDAREKGATLVPLFAEGQQRRL PQTLLLNVSDDMKVMQEEIFGPLLPVIPYERLEDALAYVNQRPRPLALYYFGYDKAQQ QRVLHETHSGGVCLNDTLLHVAQDDIPFGGVGPSGMGHYHGHEGFLTFSKAKGVFSKP RFNAARMIYPPYGKSIQKLVYKLFVR*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [goid GO:0016620] [evidence IEA]; " gene 411224..411871 /locus_tag="PA0367" CDS 411224..411871 /db_xref="GI:15595564" /function="Transcriptional regulators" /protein_id="NP_249058" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="probable transcriptional regulator" /translation="MAPRIKTRDRIAQASLELFNAQGERSVTTNHIATHLGISPGNLY YHYPNKQAIIAELFAEYESHVESFLRLPEGRGLTVDDKTFYLEALLAAMWRYRFLHRD LEHLLESDPELAARYRAFAQRCLVNAKAIYRGFTEAGILRMNETQLEALTLNAWIILT SWVRFLCTTLDLDGDLSEAQLRRGIYQVLALESGHIEAQAQDAVDGISERLYVPL*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" gene complement(412329..413327) /locus_tag="PA0368" CDS complement(412329..413327) /db_xref="GI:15595565" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249059" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MTASPTFQPAWWLPNPHLQTLWSPFFRRGPTLERQRERLWLADG DFIDLDWAGPHDAETPLVLALHGLTGSSSSHYILGLQRALLERGWASVALNWRGCSGE PNRLPRGYHSGVSDDLAEVVAHLRARRPQAPLYAVGYSLGGNVLLKYLGETAGDCPLL GGVAVSVPFRLDECADRIGLGFSRVYQAHFMKAMLAYVQDKQRLFGEQGQAEGLAALQ RLGPLEGMRTFWDFDGRVTAPLHGFADARDYYRRASSRYYLPDIRTPSLIIHSSDDPF VFARSLPDRSELAPCTELELHARGGHVGFVDGSPRQPTYYLERRIPDWLEARLRQH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(413364..413654) /locus_tag="PA0369" CDS complement(413364..413654) /db_xref="GI:15595566" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249060" /localization_and_confidence="Unknown, Class 3 (primary)" /product="hypothetical protein" /translation="VADQGADPFILETGSGRILFDLHGGRGWDPAPCFDDLWQMAASL ACFGEVWSGAGEDILLDDCSVAPRYRQQLVDELQPILGSRQRAEDLADEFGW*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." gene complement(413933..414529) /locus_tag="PA0370" /gene_synonym="yhhF" CDS complement(413933..414529) /db_xref="GI:15595567" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249061" /localization_and_confidence="Unknown, Class 3 (primary)" /product="conserved hypothetical protein" /translation="MSKPTAKAPGRHGGQGQLRIIGGEWRSRRFVFPDGPGLRPTPDR VRETLFNWLAPYVEGARVLDPFAGSGALFLEALSRGAREGLALDTNGEAVAALRNHLD ALKCGTAQLVLGDAVRYLGNQAPSAFDLVFLDPPFHQNLLQDACRLLETRGWLNPDAW IYTESESVPSSLGLPGNWRLHREKKAGNVHYALWQRGA*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: rRNA methylation [goid GO:0031167] [evidence IEA]; " gene complement(414529..416016) /locus_tag="PA0371" CDS complement(414529..416016) /db_xref="GI:15595568" /function="Hypothetical, unclassified, unknown" /protein_id="NP_249062" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Unknown, Class 3 (primary); Unknown (This protein may have multiple localization sites), Class 3 (primary)" /product="hypothetical protein" /translation="MSERTGLRYGLLGLIVIALLAALAYFVARPPQTPAAAHAAAVEE NQLQSLKDVAKQAPVHRKLDIQEWKTAEGAKVLFVEAHELPMFDLRLTFAAGSSQDAG TPGLSMLTNAMLNEGVPGKDTTAIAAGFEDLGASFSNGSYRDMAVAGLRSLSEADKRT QALKLFEQVIGQPTFPEDALARIKNQVLAGFEYQKQNPGKLAGLELFKRLYGEHPYAH SSDGDEKSVPTISREQLQAFHKKAYAAGNVVIALVGDLSRQEAEAIAAEVSKALPQGP ALAKTVQPETPKPGLTHIDFPSEQTHLMLAQLGIDRQDPDYAALYLGNQILGGGGFGT RLMDQVREKRGLTYGIYSGFTAMQARGPFMINFQTRAELSEGALKLVQDIVRDYLANG PTQKELDDAKRELAGSFPLSTASNADIVGQLGAIGFYGLPLDYLESFLKQVEGLSVEQ VRTAMAKHLDADAFVIVSAGPSVPQKPLPPPTAKPAQQPSGVPEH*" /product_name_confidence="Product name confidence: Class 4:Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences." /note="GO_process: pyrroloquinoline quinone biosynthetic process [goid GO:0018189] [evidence IEA]; " gene complement(416009..417406) /locus_tag="PA0372" CDS complement(416009..417406) /db_xref="GI:15595569" /function="Putative enzymes" /protein_id="NP_249063" /localization_and_confidence="Periplasmic, Class 1 (primary); Outer Membrane Vesicle, Class 1 (secondary); Periplasmic, Class 3 (primary)" /product="probable zinc protease" /translation="VAARKVQITMKTPARRRVGLLLASLCLPLFAQAAETQPTHEFSL DNGLKVIVREDHRAPVVVSQLWYRIGSSYETPGLTGLSHALEHMMFKGSRKLGPGEAS RVLRDLGAEENAFTTDDYTAYYQVLARDRLPVALEMEADRMAHLSLPVDQFKSEIEVI KEERRLRTDDNPNALAFERFKAAAYPASGYHTPTIGWMADLQRMTIDDLRHWYESWYA PNNATLVVVGDVTADEVKTLAKRYFGEIPWRQLPPARKPLELAEPGERRLKLYVRTQL PNLIMGFNVPSLGSSENPREVNALRLIGALLDGGYSARLASRLERGEELVAGASTYYD AFNRGDSLFVLSATPNVQKGKTLEQVEAGLWKQLDDLKQNPPSAAEIERVRAQMIAGM VYEKDSIAAQASSIGQLESVGLSWKLIDQDLEALKAVTPDDIQKAARTYFTPSRLTLA QVLPVKAEEKEARHE*" /product_name_confidence="Product name confidence: Class 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene" /note="GO_process: pyrroloquinoline quinone biosynthetic process [goid GO:0018189] [evidence IEA]; " gene 417527..418894 /locus_tag="PA0373" /name="ftsY" CDS 417527..418894 /function="Protein secretion/export apparatus" /product_synonym="cell division protein FtsY" /protein_id="NP_249064" /note="GO_process: secretion [goid GO:0046903] [evidence ISS]; GO_process: protein secretion [goid GO:0009306] [evidence IEA]; " /db_xref="GI:15595570" /localization_and_confidence="Cytoplasmic, Class 3 (primary)" /product="signal recognition particle receptor FtsY" /translation="MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSET AAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAPVAEAPLAGDEPASAEEHSPRPE APVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKT SASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELAD SGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLE GKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGIDV LIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNL AVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFA ERENA*" /product_name_confidence="Product name confidence: Class 2: Function of highly similar gene experimentally demonstrated in another organism (and gene context consistent in terms of pathways its involved in, if known). " gene 418891..419562 /locus_tag="PA0374" /name="ftsE" CDS 418891..419562 /db_xref="GI:15595571"