Pseudomonas aeruginosa PAO1, PA0084 (tssC1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| PseudoCAP | Hcp secretion island I (HSI-I) type VI secretion system |
ECO:0000037
not_recorded |
|||
| KEGG | pae02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR03355 | JCVI: type VI secretion system contractile sheath large subunit | IPR010269 | Type VI secretion system TssC-like | 19 | 493 | 0.0 |
| Pfam | PF05943 | EvpB/VC_A0108, tail sheath N-terminal domain | IPR044031 | TssC1, N-terminal | 69 | 371 | 0.0 |
| PANTHER | PTHR35565 | CYTOPLASMIC PROTEIN-RELATED | IPR010269 | Type VI secretion system TssC-like | 6 | 497 | 0.0 |
| Pfam | PF18945 | EvpB/VC_A0108, tail sheath gpW/gp25-like domain | IPR044032 | TssC1, C-terminal | 381 | 492 | 2.9E-43 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.