Pseudomonas aeruginosa PAO1, PA0447 (gcdH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0050660 flavin adenine dinucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02771
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47203
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other PAO1 genes in this class
Fatty acid and phospholipid metabolism Other PAO1 genes in this class
Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Lysine degradation ECO:0000037
not_recorded
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Tryptophan metabolism ECO:0000037
not_recorded
PseudoCyc PWY-5177 glutaryl-CoA degradation 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Fatty acid metabolism ECO:0000037
not_recorded
PseudoCyc TRYPTOPHAN-DEGRADATION-1 L-tryptophan degradation III (eukaryotic) 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00071 Fatty acid degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00310 Lysine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00362 Benzoate degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00380 Tryptophan metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.20.140.10:FF:000006 Glutaryl-CoA dehydrogenase, mitochondrial - - 241 393 7.3E-83
PIRSF PIRSF016578 PIGM - - 149 391 2.6E-10
Pfam PF02770 Acyl-CoA dehydrogenase, middle domain IPR006091 Acyl-CoA oxidase/dehydrogenase, middle domain 136 227 5.0E-21
SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily 7 238 6.54E-77
Gene3D G3DSA:1.10.540.10 - IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily 1 133 1.0E-42
Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain IPR009075 Acyl-CoA dehydrogenase/oxidase, C-terminal 239 385 1.0E-27
FunFam G3DSA:1.10.540.10:FF:000003 glutaryl-CoA dehydrogenase, mitochondrial - - 1 133 3.9E-60
Gene3D G3DSA:2.40.110.10 - IPR046373 Acyl-CoA oxidase/dehydrogenase, middle domain superfamily 135 239 8.2E-32
PANTHER PTHR42807 GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL - - 3 392 0.0
CDD cd01151 GCD - - 7 392 0.0
Gene3D G3DSA:1.20.140.10 - - - 240 393 1.7E-46
SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like IPR036250 Acyl-CoA dehydrogenase-like, C-terminal 243 390 3.54E-42
FunFam G3DSA:2.40.110.10:FF:000008 Glutaryl-CoA dehydrogenase, mitochondrial - - 135 238 7.2E-49
PIRSF PIRSF016578 PIGM - - 15 94 0.13
Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal 20 132 1.9E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.