Pseudomonas aeruginosa PAO1, PA1136

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00196
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 178 235 3.7E-19
PANTHER PTHR44688 - - - 95 239 6.0E-23
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 180 234 9.8E-18
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 177 241 1.3E-20
SUPERFAMILY SSF75516 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 8 171 2.22E-16
NCBIfam TIGR03541 JCVI: LuxR family transcriptional regulatory, chaperone HchA-associated IPR019941 Transcription regulator LuxR, chaperone HchA-associated 5 241 3.3E-110
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 195 211 2.1E-10
Gene3D G3DSA:3.30.450.80 - IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 6 170 2.6E-21
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 181 195 2.1E-10
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 211 223 2.1E-10
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 181 237 1.50375E-11
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 174 241 4.42E-19
Pfam PF03472 Autoinducer binding domain IPR005143 Transcription factor LuxR-like, autoinducer-binding domain 21 163 1.3E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.