Pseudomonas aeruginosa PAO1, PA1777 (oprF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AlgU binding site | 1920703 | 1920738 | + |
|
Details | |
| transcriptional initiation site (+1) | 1920738 | 1920738 | + |
|
Details | |
| oprF promoter | 1921072 | 1921121 | + |
|
2447060 | Details |
| SigX-independent oprF promoter | 1921073 | 1921121 | + |
|
10438740 | Details |
| SigX-dependent oprF promoter | 1921088 | 1921138 | + |
|
10438740 | Details |
| oprF promoter | 1920693 | 1920942 | + |
|
Details | |
| AlgU predicted site upstream of oprF gene | 1920705 | 1920954 | + |
|
Details | |
| AlgU binding site | 1920703 | 1920738 | + |
|
Details | |
| AlgU binding site | 1920703 | 1920738 | + |
|
Details | |
| AmpR binding site | 1921104 | 1921117 | - |
ECO:0000314
direct assay evidence used in manual assertion |
22275523 | Details |
| AmpR binding site | 1921039 | 1921052 | - |
ECO:0000314
direct assay evidence used in manual assertion |
22275523 | Details |
| AmpR binding site | 1921029 | 1921042 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24157832 | Details |
| AmpR binding site | 1921094 | 1921107 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24157832 | Details |
| Shine-Dalgarno sequence | 1921163 | 1921165 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GAAAAACCCGGCC-N2-GGCCGGGTTTTTC | 1922244 | 1922271 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 447 | 1922244 | 1922271 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 448 | 1922250 | 1922265 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 449 | 1922250 | 1922265 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |