Pseudomonas aeruginosa PAO1, PA2012 (liuD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006552 leucine catabolic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
16820476 Reviewed by curator
Biological Process GO:0046247 terpene catabolic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
16820476 Reviewed by curator
Molecular Function GO:0004485 methylcrotonoyl-CoA carboxylase activity
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
18469096 Reviewed by curator
Molecular Function GO:0004485 methylcrotonoyl-CoA carboxylase activity
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
16517656 Reviewed by curator
Biological Process GO:0008300 isoprenoid catabolic process
IMP
Inferred from Mutant Phenotype
ECO:0000015
mutant phenotype evidence
16517656 Reviewed by curator
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02786
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc LEU-DEG2-PWY L-leucine degradation I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Acyclic isoprenoid catabolism ECO:0000037
not_recorded
PseudoCyc LEUDEG-PWY leucine degradation I 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
KEGG pae00280 Valine, leucine and isoleucine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain 122 328 4.7E-79
Gene3D G3DSA:3.30.470.20 - - - 2 456 0.0
SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like - - 89 351 1.52E-69
SMART SM00878 Biotin_carb_C_2 IPR005482 Biotin carboxylase, C-terminal 342 449 1.6E-54
FunFam G3DSA:2.40.50.100:FF:000003 Acetyl-CoA carboxylase biotin carboxyl carrier protein - - 576 651 9.0E-25
Pfam PF02785 Biotin carboxylase C-terminal domain IPR005482 Biotin carboxylase, C-terminal 342 449 6.7E-37
Pfam PF00289 Biotin carboxylase, N-terminal domain IPR005481 Biotin carboxylase-like, N-terminal domain 8 116 2.6E-41
FunFam G3DSA:3.30.1490.20:FF:000003 acetyl-CoA carboxylase isoform X1 - - 138 208 2.1E-19
Gene3D G3DSA:2.40.50.100 - - - 584 655 2.5E-27
Gene3D G3DSA:3.30.700.40 - - - 459 576 1.9E-42
CDD cd06850 biotinyl_domain - - 585 650 1.42352E-30
FunFam G3DSA:3.30.470.20:FF:000028 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial - - 1 455 0.0
PANTHER PTHR18866 CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE - - 4 515 0.0
SUPERFAMILY SSF52440 PreATP-grasp domain IPR016185 Pre-ATP-grasp domain superfamily 4 119 4.96E-46
SUPERFAMILY SSF51230 Single hybrid motif IPR011053 Single hybrid motif 573 650 5.89E-22
FunFam G3DSA:3.40.50.20:FF:000010 Propionyl-CoA carboxylase subunit alpha - - 3 137 6.2E-53
Pfam PF00364 Biotin-requiring enzyme IPR000089 Biotin/lipoyl attachment 586 650 2.5E-18
SUPERFAMILY SSF51246 Rudiment single hybrid motif IPR011054 Rudiment single hybrid motif 337 454 8.89E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.