Pseudomonas aeruginosa PAO1, PA2016 (liuR)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	IDA Inferred from Direct Assay	ECO:0000002 direct assay evidence
Biological Process	GO:0006521	regulation of cellular amino acid metabolic process	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	18820024	Reviewed by curator
Biological Process	GO:0008300	isoprenoid catabolic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	15345388	Reviewed by curator
Biological Process	GO:0006351	transcription, DNA-templated	ISS Inferred from Sequence or Structural Similarity	ECO:0000250 sequence similarity evidence used in manual assertion	18820024	Reviewed by curator
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13411	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PTHR30204	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13411	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:1.10.1660.10:FF:000015	Transcriptional regulator, MerR family	-	-	1	122	2.8E-68
Coils	Coil	Coil	-	-	7	27	-
SUPERFAMILY	SSF46955	Putative DNA-binding domain	IPR009061	Putative DNA-binding domain superfamily	5	121	2.49E-24
Coils	Coil	Coil	-	-	81	125	-
CDD	cd04776	HTH_GnyR	-	-	5	123	3.50733E-58
Pfam	PF13411	MerR HTH family regulatory protein	IPR000551	MerR-type HTH domain	5	70	6.4E-16
Gene3D	G3DSA:1.10.1660.10	-	-	-	2	126	1.9E-26
PANTHER	PTHR30204	REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR	IPR047057	MerR transcriptional regulator	1	122	3.2E-20
SMART	SM00422	merrmega3	IPR000551	MerR-type HTH domain	5	72	2.4E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.