Pseudomonas aeruginosa PAO1, PA2320 (gntR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
Shine-Dalgarno sequence 2560134 2560137 + ECO:0000256
match to sequence model evidence used in automatic assertion
Details
GntR binding site 2559981 2560696 + ECO:0001807
28752954 Details
GntR binding site 2560683 2559994 + ECO:0001807
28752954 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
Inverted repeat: GCGGCGTCGC-N32-GCGACGCCGC 2559789 2559840 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Inverted repeat: GTAGGGCGAATA-N58-TATTCGCCCTAC 2558366 2558447 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: TATCCGCCGT-N13-ACGGCGGATA 2558390 2558422 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GGCGTAACGGC-N36-GCCGTTACGCC 2558407 2558464 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: ACGGCGGATA-N98-TATCCGCCGT 2558413 2558530 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: TATTCGCCCTAC-N49-GTAGGGCGAATA 2558436 2558508 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GCCGTTACGCC-N73-GGCGTAACGGC 2558454 2558548 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GTAGGGCGAATA-N58-TATTCGCCCTAC 2558497 2558578 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GGCGTAACGGC-N37-GCCGTTACGCC 2558538 2558596 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: TATTCGCCCTAC-N49-GTAGGGCGAATA 2558567 2558639 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GCCGTTACGCC-N72-GGCGTAACGGC 2558586 2558679 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GTAGGGCGAATA-N58-TATTCGCCCTAC 2558628 2558709 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: TATCCGCCGT-N13-ACGGCGGATA 2558652 2558684 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GGCGTAACGGC-N37-GCCGTTACGCC 2558669 2558727 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: ACGGCGGATA-N99-TATCCGCCGT 2558675 2558793 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: TATTCGCCCTAC-N50-GTAGGGCGAATA 2558698 2558771 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GCCGTTACGCC-N73-GGCGTAACGGC 2558717 2558811 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: TATCCGCCGT-N13-ACGGCGGATA 2558784 2558816 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GGCGTAACGGC-N36-GCCGTTACGCC 2558801 2558858 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Inverted repeat: GGCGGATAGCGC-N4-GCGCTATCCGCC 2558809 2558836 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details
Rho-independent transcription terminator TERM 562 2558798 2558845 - ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details
Rho-independent transcription terminator TERM 563 2558799 2558844 - ECO:0000246
computational combinatorial evidence used in automatic assertion
17313685 Details