Pseudomonas aeruginosa PAO1, PA2385 (pvdQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0002049 pyoverdine biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
19787431 Reviewed by curator
Biological Process GO:0071978 bacterial-type flagellum-dependent swarming motility
IEP
Inferred from Expression Pattern
ECO:0000270
expression evidence used in manual assertion
18245294 Reviewed by curator
Biological Process GO:0071978 bacterial-type flagellum-dependent swarming motility
IGI
Inferred from Genetic Interaction
ECO:0000316
genetic interaction evidence used in manual assertion
19778968 Reviewed by curator
Biological Process GO:0009405 pathogenesis
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
19778968 Reviewed by curator
Biological Process GO:0002049 pyoverdine biosynthetic process
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
22498339 Reviewed by curator
Biological Process GO:0046677 response to antibiotic
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
21833667 Reviewed by curator
Biological Process GO:0002049 pyoverdine biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
21892836 Reviewed by curator
Biological Process GO:0002049 pyoverdine biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
12686626 Reviewed by curator
Molecular Function GO:0009392 N-acetyl-anhydromuramoyl-L-alanine amidase activity

Molecular Function GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
16495538 Reviewed by curator
Biological Process GO:0002049 pyoverdine biosynthetic process
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
12686626 Reviewed by curator
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay
ECO:0000002
direct assay evidence
Biological Process GO:0071978 bacterial-type flagellum-dependent swarming motility
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
18245294 Reviewed by curator
Molecular Function GO:0047379 ADP-dependent short-chain-acyl-CoA hydrolase activity
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
21892836 Reviewed by curator
Cellular Component GO:0005737 cytoplasm
IDA
Inferred from Direct Assay
ECO:0000314
direct assay evidence used in manual assertion
22498339 Reviewed by curator
Biological Process GO:0044010 single-species biofilm formation
IMP
Inferred from Mutant Phenotype
ECO:0000315
mutant phenotype evidence used in manual assertion
19778968 Reviewed by curator
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01804
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001227
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0017000 antibiotic biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01804
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCyc PYRNUCYC-PWY pyridine nucleotide cycling 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747
PseudoCAP Pyoverdine synthesis ECO:0000037
not_recorded
PseudoCyc P345-PWY aldoxime degradation 19.5 ECO:0000250
sequence similarity evidence used in manual assertion
12867747

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01804 Penicillin amidase IPR002692 Penicillin/GL-7-ACA/AHL/aculeacin-A acylase 33 750 1.1E-143
PIRSF PIRSF001227 IPR014395 Penicillin/GL-7-ACA/AHL acylase 179 759 4.9E-55
Gene3D G3DSA:3.60.20.10 IPR029055 Nucleophile aminohydrolases, N-terminal 217 291 9.8E-237
Gene3D G3DSA:1.10.1400.10 509 690 9.8E-237
Gene3D G3DSA:1.10.439.10 IPR023343 Penicillin amidase type, domain 1 28 192 6.2E-67
Coils Coil 760 762 -
Gene3D G3DSA:2.30.120.10 292 366 9.8E-237
Gene3D G3DSA:3.60.20.10 IPR029055 Nucleophile aminohydrolases, N-terminal 691 749 9.8E-237
SUPERFAMILY SSF56235 IPR029055 Nucleophile aminohydrolases, N-terminal 33 756 2.03E-184
CDD cd01936 Ntn_CA 35 744 0.0
PIRSF PIRSF001227 IPR014395 Penicillin/GL-7-ACA/AHL acylase 10 153 1.3E-13
Gene3D G3DSA:3.60.20.10 IPR029055 Nucleophile aminohydrolases, N-terminal 367 506 9.8E-237

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.