Pseudomonas aeruginosa PAO1, PA2386 (pvdA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| PvdS binding site | 2640359 | 2640367 | - |
|
12207696 | Details |
| transcription initiation site T1 | 2640332 | 2640332 | - |
|
16030202 | Details |
| Shine-Dalgarno sequence | 2640261 | 2640275 | - |
|
16030202 | Details |
| transcription initiation site T2 | 2640306 | 2640306 | - |
|
16030202 | Details |
| pvdS binding site | 2640361 | 2640365 | - |
|
16030202 | Details |
| pvdS binding site | 2640342 | 2640344 | - |
|
16030202 | Details |
| PvdS binding site | 2640342 | 2640365 | - |
ECO:0000314
direct assay evidence used in manual assertion |
22900619 | Details |
| Inverted repeat: TCCCATTCGC-N84-GCGAATGGGA | 2640402 | 2640505 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Fur box | 2639621 | 2639639 | - |
|
12207696 | Details |
| Fur binding site | 2639621 | 2639639 | + |
ECO:0000314
direct assay evidence used in manual assertion |
12207696 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| VqsM binding site | 2638586 | 2638600 | + |
ECO:0000314
direct assay evidence used in manual assertion |
25034696 | Details |
| Rho-independent transcription terminator TERM 569 | 2638861 | 2638910 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |