Pseudomonas aeruginosa PAO1, PA3007 (lexA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009432 SOS response
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 7027255 Reviewed by curator
Biological Process GO:0044267 cellular protein metabolic process
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0050896 response to stimulus
IDA
Inferred from Direct Assay 		ECO:0000002
direct assay evidence
Biological Process GO:0006355 regulation of transcription, DNA-templated
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 1494343 Reviewed by curator
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0045892 negative regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009432 SOS response
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other PAO1 genes in this class
Adaptation, Protection Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000009 LexA repressor - - 1 69 2.6E-33
PANTHER PTHR33516 LEXA REPRESSOR - - 1 203 5.8E-56
Hamap MF_00015 LexA repressor [lexA]. IPR006200 Transcription regulator LexA 3 204 32.413368
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 3 70 1.7E-21
CDD cd06529 S24_LexA-like IPR039418 LexA-like 117 193 2.14595E-21
Pfam PF00717 Peptidase S24-like IPR015927 Peptidase S24/S26A/S26B/S26C 83 196 1.2E-30
PRINTS PR00726 Repressor LexA serine protease (S24) family signature IPR006197 Peptidase S24, LexA-like 156 168 1.9E-12
NCBIfam TIGR00498 JCVI: transcriptional repressor LexA IPR006200 Transcription regulator LexA 1 204 2.2E-74
FunFam G3DSA:2.10.109.10:FF:000001 LexA repressor - - 81 204 2.4E-53
PRINTS PR00726 Repressor LexA serine protease (S24) family signature IPR006197 Peptidase S24, LexA-like 128 139 1.9E-12
PRINTS PR00726 Repressor LexA serine protease (S24) family signature IPR006197 Peptidase S24, LexA-like 117 127 1.9E-12
Pfam PF01726 LexA DNA binding domain IPR006199 LexA repressor, DNA-binding domain 1 65 2.0E-31
SUPERFAMILY SSF51306 LexA/Signal peptidase IPR036286 LexA/Signal peptidase-like superfamily 82 203 6.8E-36
Gene3D G3DSA:2.10.109.10 Umud Fragment, subunit A - - 81 204 2.0E-38
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 68 1.2E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.