Pseudomonas aeruginosa PAO1, PA3385 (amrZ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| AlgZ binding site | 3791120 | 3791137 | + |
|
15968052 | Details |
| AlgZ binding site | 3791178 | 3791216 | + |
|
15968052 | Details |
| -35 region | 3791258 | 3791263 | + |
|
15968052 | Details |
| -10 region | 3791280 | 3791284 | + |
|
15968052 | Details |
| transcriptional initiation site (+1) | 3791290 | 3791290 | + |
|
15968052 | Details |
| LasR binding site | 3791169 | 3791184 | - |
|
Details | |
| LasR binding site | 3791170 | 3791185 | - |
ECO:0000314
direct assay evidence used in manual assertion |
19682264 | Details |
| AmrZ binding site | 3791190 | 3791202 | - |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 3791196 | 3791208 | + |
ECO:0000314
direct assay evidence used in manual assertion |
24603766 | Details |
| AmrZ binding site | 3791184 | 3791197 | - |
ECO:0000314
direct assay evidence used in manual assertion |
15968052 | Details |
| AmrZ binding site | 3791193 | 3791206 | + |
ECO:0000314
direct assay evidence used in manual assertion |
22511872 | Details |
| AmrZ binding site | 3791124 | 3791137 | + |
ECO:0000314
direct assay evidence used in manual assertion |
15968052 | Details |
| Shine-Dalgarno sequence | 3791336 | 3791338 | + |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| lux-box | 3792162 | 3792183 | + |
|
9721281 | Details |
| Rho-independent transcription terminator TERM 852 | 3791705 | 3791720 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |