Pseudomonas aeruginosa PAO1, PA3540 (algD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Upstream Motifs

*Up to 500bp upstream
Name Start Stop Strand Evidence PMID
IHF site (ihf 1) 3962355 3962368 +
Details
IHF site (ihf 1) 3962376 3962389 +
Details
AlgU binding site 3962422 3962457 +
Details
RpoN site 3962423 3962436 +
Details
transcriptional initiation site (+1) 3962457 3962457 +
Details
IHF site (ihf2) 3962535 3962544 +
Details
CysB site 3962540 3962585 +
Details
algD promoter 3962415 3962463 +
7961422 Details
algD promoter 3962414 3962462 +
3108855 Details
algD promoter 3962414 3962462 +
2167423 Details
algD promoter 3962413 3962462 +
2121708 Details
algD promoter region 3962348 3962404 +
3149945 Details
AlgT site at algD gene 3962423 3962452 +
10792721 Details
RpoN site at algD gene 3962422 3962452 +
10792721 Details
RpoN retarded fragment of algD promoter 3962354 3962513 +
10792721 Details
RpoN protected fragment at algD promoter 3962422 3962452 +
10792721 Details
algD promoter 3962413 3962462 +
2496102 Details
AlgR retarded fragment III upstream of algD gene 3962126 3962468 +
1907266 Details
algD promoter 3962413 3962462 +
1899859 Details
algD promoter 3962413 3962462 +
9218775 Details
CysB binding site at algD gene 3962541 3962586 +
9218775 Details
CysB retarded fragment 0 at algD gene 3962401 3962646 +
9218775 Details
CysB retarded fragment 1 at algD gene 3962546 3962692 +
9218775 Details
CysB retarded fragment 2 at algD gene 3962473 3962596 +
9218775 Details
CysB retarded fragment 3 at algD gene 3962541 3962692 +
9218775 Details
IHF binding fragment A at algD gene 3962515 3962689 +
9218775 Details
IHF binding fragment B at algD gene 3962494 3962668 +
9218775 Details
IHF binding fragment C at algD gene 3962473 3962647 +
9218775 Details
IHF binding fragment D at algD gene 3962454 3962628 +
9218775 Details
IHF binding fragment E at algD gene 3962395 3962569 +
9218775 Details
algD promoter region 3962348 3962404 +
2109318 Details
algD promoter region 3961987 3962423 +
1400214 Details
AlgR retarded RB3 fragment at algD gene 3962306 3962472 +
1400214 Details
AlgR protected RB3 fragment at algD gene 3962413 3962443 +
1400214 Details
AlgR retarded RB2 fragment at algD gene 3962306 3962335 +
1400214 Details
IHF retarded fragment at algD gene 3962358 3962562 +
Details
IHF-binding element 1-1 3962358 3962398 +
Details
IHF-binding element 1-2 3962358 3962398 +
Details
IHF-binding element 2 3962529 3962562 +
Details
IHF binding site at algD gene 3962378 3962407 +
1472055 Details
IHF retarded fragment at algD gene 3962054 3962468 +
1472055 Details
IHF protected fragment at algD gene 3962373 3962408 +
1472055 Details
algD promoter 3962413 3962662 +
11443106 Details
algD promoter 3962413 3962662 +
Details
AlgU predicted site upstream of algD gene 3962425 3962674 +
Details
algD promoter 3962413 3962662 +
14645293 Details
AlgB binding fragment upstream of algDKEGLIJF oper 3962186 3962435 +
Details
transcription initiation site 3962458 3962458 +
7928961 Details
integration host factor (Ihf) binding site 3962535 3962561 +
8051019 Details
integration host factor (Ihf) binding site 3962358 3962390 +
8051019 Details
AlgU binding site 3962423 3962458 +
11807066 Details
AmrZ binding site 3962324 3962336 - ECO:0000314
direct assay evidence used in manual assertion
24603766 Details
AmrZ binding site 3962349 3962361 + ECO:0000314
direct assay evidence used in manual assertion
24603766 Details
AmrZ binding site 3962360 3962372 + ECO:0000314
direct assay evidence used in manual assertion
24603766 Details
AmrZ binding site 3962375 3962387 - ECO:0000314
direct assay evidence used in manual assertion
24603766 Details
RpoN binding site 3962424 3962438 + ECO:0000314
direct assay evidence used in manual assertion
22510163 Details
IHF binding site 3962357 3962369 + ECO:0000314
direct assay evidence used in manual assertion
22510163 Details
IHF binding site 3962378 3962390 + ECO:0000314
direct assay evidence used in manual assertion
22510163 Details
IHF binding site 3962536 3962548 + ECO:0000314
direct assay evidence used in manual assertion
22510163 Details

Motifs annotated in this feature

Name Start Stop Strand Evidence PMID
SD sequence of algD 3962825 3962854 +
8063091 Details

Downstream motifs

*Up to 500bp downstream
Name Start Stop Strand Evidence PMID
Inverted repeat: CGGCGTGCGC-N14-GCGCACGCCG 3964206 3964239 + ECO:0000246
computational combinatorial evidence used in automatic assertion
10827456 Details