Pseudomonas aeruginosa PAO1, PA4853 (fis)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0016070 RNA metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002097
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class
Transcriptional regulators Other PAO1 genes in this class
Transcription, RNA processing and degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.60:FF:000006 DNA-binding protein Fis - - 13 107 2.3E-38
PIRSF PIRSF002097 DNA-bp_Fis IPR005412 DNA-binding protein Fis 9 107 5.8E-42
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 87 107 2.2E-10
MobiDBLite mobidb-lite consensus disorder prediction - - 1 35 -
Gene3D G3DSA:1.10.10.60 - - - 13 106 1.8E-27
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 24 106 8.96E-23
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 66 104 3.2E-14
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 35 51 7.6E-12
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 51 66 7.6E-12
PRINTS PR01591 DNA-binding protein FIS signature IPR005412 DNA-binding protein Fis 66 78 7.6E-12
PANTHER PTHR47918 DNA-BINDING PROTEIN FIS - - 13 106 3.6E-40
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 70 87 2.2E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.