Pseudomonas aeruginosa PAO1, PA4944 (hfq)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0045974	regulation of translation, ncRNA-mediated	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	24945892	Reviewed by curator
Biological Process	GO:0043487	regulation of RNA stability	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	16468994	Reviewed by curator
Biological Process	GO:0009372	quorum sensing	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	16468994	Reviewed by curator
Biological Process	GO:0043609	regulation of carbon utilization	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	24945892	Reviewed by curator
Biological Process	GO:0006417	regulation of translation	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	24945892	Reviewed by curator
Biological Process	GO:0009405	pathogenesis	IMP Inferred from Mutant Phenotype	ECO:0000315 mutant phenotype evidence used in manual assertion	14521880	Reviewed by curator
Molecular Function	GO:0003723	RNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02383	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02383	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae02024	Quorum sensing	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:2.30.30.100	-	-	-	1	82	1.9E-38
PANTHER	PTHR34772	RNA-BINDING PROTEIN HFQ	IPR005001	RNA-binding protein Hfq	1	76	9.1E-35
Hamap	MF_00436	RNA-binding protein Hfq [hfq].	IPR005001	RNA-binding protein Hfq	1	64	27.383587
FunFam	G3DSA:2.30.30.100:FF:000001	RNA-binding protein Hfq	-	-	1	75	4.2E-46
Pfam	PF17209	Hfq protein	IPR005001	RNA-binding protein Hfq	7	68	2.2E-31
SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	IPR010920	LSM domain superfamily	7	69	2.31E-24
CDD	cd01716	Hfq	IPR005001	RNA-binding protein Hfq	6	64	5.93427E-29
NCBIfam	TIGR02383	JCVI: RNA chaperone Hfq	IPR005001	RNA-binding protein Hfq	6	64	1.4E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.