Pseudomonas aeruginosa PAO1, PA5353 (glcF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044248 cellular catabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0015976 carbon utilization
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Biological Process GO:0008152 metabolic process
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000044
sequence similarity evidence
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Carbon compound catabolism Other PAO1 genes in this class
Central intermediary metabolism Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00630 Glyoxylate and dicarboxylate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
PseudoCAP Glyoxylate and dicarboxylate metabolism ECO:0000037
not_recorded
KEGG pae01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF54862 4Fe-4S ferredoxins - - 18 124 1.46E-18
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 171 255 4.1E-12
PIRSF PIRSF000139 Glc_ox_4Fe-4S IPR012257 Glycolate oxidase, iron-sulphur subunit 5 408 5.1E-119
Gene3D G3DSA:1.10.1060.10 - IPR009051 Alpha-helical ferredoxin 2 106 3.9E-15
Pfam PF02754 Cysteine-rich domain IPR004017 Cysteine-rich domain 303 386 1.2E-13
Pfam PF12838 4Fe-4S dicluster domain IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain 24 89 1.3E-11
PANTHER PTHR32479 GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT - - 6 405 2.7E-98
Coils Coil Coil - - 269 289 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.