Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0019306 | GDP-D-rhamnose biosynthetic process | Inferred from Experiment | ECO:0000269 experimental evidence used in manual assertion |
19459932 | Reviewed by curator |
Biological Process | GO:0009243 | O antigen biosynthetic process | Inferred from Direct Assay | ECO:0000314 direct assay evidence used in manual assertion |
19459932 | Reviewed by curator |
Biological Process | GO:0009103 | lipopolysaccharide biosynthetic process | Inferred from Mutant Phenotype | ECO:0000015 mutant phenotype evidence |
8548534 | Reviewed by curator |
Molecular Function | GO:0008446 | GDP-mannose 4,6-dehydratase activity | Inferred from Experiment | ECO:0000269 experimental evidence used in manual assertion |
9781879 | Reviewed by curator |
Molecular Function | GO:0008446 | GDP-mannose 4,6-dehydratase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43715
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0019673 | GDP-mannose metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43715
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | pae00051 | Fructose and mannose metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | COLANSYN-PWY | colanic acid building blocks biosynthesis | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
PseudoCAP | Fructose and mannose metabolism |
ECO:0000037
not_recorded |
|||
PseudoCAP | Lipopolysaccharide biosynthesis |
ECO:0000037
not_recorded |
|||
PseudoCyc | GDPRHAMSYN-PWY | GDP-D-rhamnose biosynthesis | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
KEGG | pae01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae00520 | Amino sugar and nucleotide sugar metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
PseudoCyc | PWY-66 | GDP-L-fucose biosynthesis I (from GDP-D-mannose) | 19.5 |
ECO:0000250
sequence similarity evidence used in manual assertion |
12867747 |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Pfam | PF16363 | GDP-mannose 4,6 dehydratase | IPR016040 | NAD(P)-binding domain | 6 | 312 | 9.6E-123 |
Gene3D | G3DSA:3.90.25.10 | - | - | - | 186 | 312 | 0.0 |
PANTHER | PTHR43715 | GDP-MANNOSE 4,6-DEHYDRATASE | IPR006368 | GDP-mannose 4,6-dehydratase | 3 | 320 | 1.2E-121 |
Gene3D | G3DSA:3.40.50.720 | - | - | - | 6 | 302 | 0.0 |
FunFam | G3DSA:3.40.50.720:FF:000924 | GDP-mannose 4,6 dehydratase | - | - | 1 | 208 | 5.5E-61 |
SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | IPR036291 | NAD(P)-binding domain superfamily | 3 | 319 | 9.68E-75 |
CDD | cd05260 | GDP_MD_SDR_e | - | - | 5 | 318 | 0.0 |
Hamap | MF_00955 | GDP-mannose 4,6-dehydratase [gmd]. | IPR006368 | GDP-mannose 4,6-dehydratase | 3 | 322 | 53.110771 |
NCBIfam | TIGR01472 | JCVI: GDP-mannose 4,6-dehydratase | IPR006368 | GDP-mannose 4,6-dehydratase | 4 | 319 | 8.0E-127 |