Pseudomonas aeruginosa UCBPP-PA14, PA14_02750

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02209 cupin_XRE_C - - 90 176 1.18081E-24
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 67 176 3.6E-19
SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains IPR010982 Lambda repressor-like, DNA-binding domain superfamily 3 66 2.95E-18
Gene3D G3DSA:1.10.260.40 - IPR010982 Lambda repressor-like, DNA-binding domain superfamily 1 66 4.1E-19
PANTHER PTHR46797 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 3 177 1.0E-31
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 67 175 5.63E-24
Pfam PF07883 Cupin domain IPR013096 Cupin 2, conserved barrel 118 174 1.4E-13
Pfam PF01381 Helix-turn-helix IPR001387 Cro/C1-type helix-turn-helix domain 5 59 1.6E-16
CDD cd00093 HTH_XRE IPR001387 Cro/C1-type helix-turn-helix domain 4 42 3.04124E-10
SMART SM00530 mbf_short4 IPR001387 Cro/C1-type helix-turn-helix domain 4 59 2.2E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.