Pseudomonas aeruginosa UCBPP-PA14, PA14_03170

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015074 DNA integration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13683
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Related to phage, transposon, or plasmid Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.420.10 IPR036397 Ribonuclease H superfamily 100 239 1.2E-18
Pfam PF13683 Integrase core domain IPR001584 Integrase, catalytic core 187 252 2.4E-30
Coils Coil 28 48 -
ProSiteProfiles PS50994 Integrase catalytic domain profile. IPR001584 Integrase, catalytic core 99 260 23.348
SUPERFAMILY SSF53098 IPR012337 Ribonuclease H-like superfamily 97 260 2.02E-40
Pfam PF13276 HTH-like domain IPR025948 HTH-like domain 34 87 6.7E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.