Pseudomonas aeruginosa UCBPP-PA14, PA14_03240 (hcpC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03344 JCVI: type VI secretion system tube protein TssD/Hcp IPR008514 Type VI secretion system effector Hcp 1 168 1.1E-72
Gene3D G3DSA:2.30.110.20 - IPR036624 Hcp1-like superfamily 2 172 6.0E-67
PANTHER PTHR34319 MAJOR EXPORTED PROTEIN - - 1 163 2.8E-46
SUPERFAMILY SSF141452 Hcp1-like IPR036624 Hcp1-like superfamily 2 171 6.54E-47
Pfam PF05638 Type VI secretion system effector, Hcp IPR008514 Type VI secretion system effector Hcp 6 155 5.9E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.