Pseudomonas aeruginosa UCBPP-PA14, PA14_33940 (tseF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_33940
Name
tseF
Replicon chromosome
Genomic location 3017037 - 3017573 (- strand)
Transposon Mutants in orthologs 1 transposon mutants in orthologs
CommentHcp Secretion Island-III-encoded type VI secretion system (H3-T6SS)

Cross-References

RefSeq YP_790868.1
GI 116050315
Entrez 4380436
INSDC ABJ11551.1
NCBI Locus Tag PA14_33940
UniParc UPI0000396AC6
UniProtKB Acc Q02MG8
UniProtKB ID Q02MG8_PSEAB
UniRef100 UniRef100_Q02MG8
UniRef50 UniRef50_A0A0A1I354
UniRef90 UniRef90_W0YR06

Product

Feature Type CDS
Coding Frame 1
Product Name
TseF
Product Name Confidence: Class 1
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) 1.39
Kyte-Doolittle Hydrophobicity Value -0.681
Molecular Weight (kDa) 19.8
Isoelectric Point (pI) 7.42

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Virulence Evidence

Source 1
Database PseudoCAP
Category Hcp secretion island-3 encoded type VI secretion system (H3-T6SS)
Evidence ECO:0000316
genetic interaction evidence used in manual assertion
Host Organism Arabidopsis thaliana
Notes
Infection model Arabidopsis leaf infiltration model
Reference 19497948

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 66 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003152 (329 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_33940
Search term: tseF
Search term: TseF

Human Homologs

References

A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition.
Lin J, Zhang W, Cheng J, Yang X, Zhu K, Wang Y, Wei G, Qian PY, Luo ZQ, Shen X
Nat Commun 2017 Mar 28;8:14888
PubMed ID: 28348410