Pseudomonas putida KT2440, PP_3095 (clpV1)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0016887	ATPase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07724	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00300	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other KT2440 genes in this class Translation, post-translational modification, degradation Other KT2440 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppu02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppu03070	Bacterial secretion system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	194	524	8.27E-71
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	614	632	1.6E-32
Pfam	PF10431	C-terminal, D2-small domain, of ClpB protein	IPR019489	Clp ATPase, C-terminal	785	856	7.6E-13
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	171	193	-
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	721	735	1.6E-32
Pfam	PF07724	AAA domain (Cdc48 subfamily)	IPR003959	ATPase, AAA-type, core	609	776	1.8E-42
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	688	706	1.6E-32
Coils	Coil	Coil	-	-	478	529	-
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	183	377	6.4E-71
Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	IPR003959	ATPase, AAA-type, core	238	350	1.2E-8
SUPERFAMILY	SSF81923	Double Clp-N motif	IPR036628	Clp, N-terminal domain superfamily	22	140	3.34E-18
Gene3D	G3DSA:1.10.8.60	-	-	-	783	873	7.3E-10
FunFam	G3DSA:3.40.50.300:FF:000010	Chaperone clpB 1, putative	-	-	184	377	1.6E-82
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	610	750	5.7E-9
Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	IPR004176	Clp, repeat (R) domain	34	86	2.0E-6
Pfam	PF17871	AAA lid domain	IPR041546	ClpA/ClpB, AAA lid domain	378	478	1.4E-27
SMART	SM00382	AAA_5	IPR003593	AAA+ ATPase domain	233	378	2.7E-10
Coils	Coil	Coil	-	-	447	467	-
CDD	cd19499	RecA-like_ClpB_Hsp104-like	-	-	574	780	8.89486E-78
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	IPR027417	P-loop containing nucleoside triphosphate hydrolase	559	857	6.99E-65
SMART	SM01086	ClpB_D2_small_2	IPR019489	Clp ATPase, C-terminal	782	875	1.9E-8
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	379	557	4.6E-45
PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	-	-	27	856	0.0
NCBIfam	TIGR03345	JCVI: type VI secretion system ATPase TssH	IPR017729	AAA+ ATPase ClpV1	23	866	0.0
FunFam	G3DSA:3.40.50.300:FF:000025	ATP-dependent Clp protease subunit	-	-	563	780	2.8E-79
Gene3D	G3DSA:1.10.1780.10	-	IPR036628	Clp, N-terminal domain superfamily	12	171	1.6E-40
PRINTS	PR00300	ATP-dependent Clp protease ATP-binding subunit signature	IPR001270	ClpA/B family	659	677	1.6E-32
CDD	cd00009	AAA	-	-	217	376	5.85366E-14
Gene3D	G3DSA:3.40.50.300	-	IPR027417	P-loop containing nucleoside triphosphate hydrolase	563	780	5.9E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.