Pseudomonas putida KT2440, PP_5562 (tagB1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas putida KT2440 (TIGR)
GCF_000007565.2|latest
Locus Tag
PP_5562
Name
tagB1
Synonym: tagX1
Replicon chromosome
Genomic location 3496832 - 3497596 (- strand)
CommentPart of the K1-T6SS KT2440-Type VI secretion system

Cross-References

RefSeq YP_009237036.1
GI 1002826126

Product

Feature Type CDS
Coding Frame 1
Product Name
TagB1
Product Name Confidence: Class 1
Synonyms TagX1
Evidence for Translation
Detected by western blot
Visualised by fluorescence microscopy
Charge (pH 7) -4.10
Kyte-Doolittle Hydrophobicity Value -0.080
Molecular Weight (kDa) 28531.3
Isoelectric Point (pI) 5.40

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PP_5562
Search term: tagB1
Search term: TagB1

Human Homologs

References

The Pseudomonas putida T6SS is a plant warden against phytopathogens.
Bernal P, Allsopp LP, Filloux A, Llamas MA
ISME J 2017 Apr;11(4):972-987
PubMed ID: 28045455
A novel stabilization mechanism for the type VI secretion system sheath.
Bernal P, Furniss RCD, Fecht S, Leung RCY, Spiga L, Mavridou DAI, Filloux A
Proc Natl Acad Sci U S A 2021 Feb 16;118(7)
PubMed ID: 33558227