Pseudomonas putida KT2440, PP_5238 (hcp6)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Coils | Coil | Coil | - | - | 158 | 162 | - |
| SUPERFAMILY | SSF141452 | Hcp1-like | IPR036624 | Hcp1-like superfamily | 2 | 160 | 1.57E-45 |
| NCBIfam | TIGR03344 | JCVI: type VI secretion system tube protein TssD/Hcp | IPR008514 | Type VI secretion system effector Hcp | 2 | 153 | 5.1E-18 |
| Pfam | PF05638 | Type VI secretion system effector, Hcp | IPR008514 | Type VI secretion system effector Hcp | 6 | 135 | 2.1E-36 |
| PANTHER | PTHR36152 | CYTOPLASMIC PROTEIN-RELATED | - | - | 1 | 159 | 2.9E-28 |
| Gene3D | G3DSA:2.30.110.20 | - | IPR036624 | Hcp1-like superfamily | 1 | 161 | 3.2E-49 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.