Pseudomonas putida KT2440, PP_5241

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0000160	phosphorelay signal transduction system	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00072	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF46894	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd06170	LuxR_C_like	IPR000792	Transcription regulator LuxR, C-terminal	263	316	2.41658E-12
CDD	cd00383	trans_reg_C	IPR001867	OmpR/PhoB-type DNA-binding domain	9	91	3.22904E-22
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	2	93	8.22E-20
Pfam	PF00072	Response regulator receiver domain	IPR001789	Signal transduction response regulator, receiver domain	127	236	8.6E-21
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	293	305	1.3E-10
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	253	317	7.7E-17
Pfam	PF00486	Transcriptional regulatory protein, C terminal	IPR001867	OmpR/PhoB-type DNA-binding domain	20	91	1.1E-15
Gene3D	G3DSA:3.40.50.2300	-	-	-	124	245	7.3E-26
SUPERFAMILY	SSF52172	CheY-like	IPR011006	CheY-like superfamily	126	275	8.97E-31
PANTHER	PTHR44688	-	-	-	110	321	1.1E-34
SMART	SM00421	luxrmega5	IPR000792	Transcription regulator LuxR, C-terminal	260	317	2.4E-16
SMART	SM00448	REC_2	IPR001789	Signal transduction response regulator, receiver domain	125	236	4.9E-23
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	1	99	2.9E-24
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	263	277	1.3E-10
SMART	SM00862	Trans_reg_C_3	IPR001867	OmpR/PhoB-type DNA-binding domain	20	91	2.1E-21
Pfam	PF00196	Bacterial regulatory proteins, luxR family	IPR000792	Transcription regulator LuxR, C-terminal	262	316	1.4E-15
PRINTS	PR00038	LuxR bacterial regulatory protein HTH signature	IPR000792	Transcription regulator LuxR, C-terminal	277	293	1.3E-10
SUPERFAMILY	SSF46894	C-terminal effector domain of the bipartite response regulators	IPR016032	Signal transduction response regulator, C-terminal effector	253	319	4.42E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.