Pseudomonas aeruginosa PAO1, PA3142

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
Locus Tag
PA3142
Name
Replicon chromosome
Genomic location 3527429 - 3527734 (- strand)

Cross-References

RefSeq NP_251832.1
GI 15598338
Affymetrix PA3142_i_at
DNASU PaCD00007380
Entrez 882584
GenBank AAG06530.1
INSDC AAG06530.1
NCBI Locus Tag PA3142
protein_id(GenBank) gb|AAG06530.1|AE004738_4|gnl|PseudoCAP|PA3142
TIGR NTL03PA03142
UniParc UPI00000C5928
UniProtKB Acc Q9HZ85
UniProtKB ID Q9HZ85_PSEAE
UniRef100 UniRef100_Q9HZ85
UniRef50 UniRef50_Q9HZ85
UniRef90 UniRef90_Q9HZ85

Product

Feature Type CDS
Coding Frame 1
Product Name
integrase
Product Name Confidence: Class 2
Synonyms hypothetical protein
Evidence for Translation
Charge (pH 7) 6.19
Kyte-Doolittle Hydrophobicity Value -0.285
Molecular Weight (kDa) 11.5
Isoelectric Point (pI) 10.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Virulence Evidence

Source 1
Database VFDB : VF0085
Category LPS O-antigen (P. aeruginosa)
Evidence
Host Organism
Notes
Reference

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 145 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG008408 (14 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3142
Search term: integrase

References

IS406 and IS407, two gene-activating insertion sequences for Pseudomonas cepacia.
Wood MS, Byrne A, Lessie TG
Gene 1991 Aug;105(1):101-5
PubMed ID: 1718819
Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesis.
Rocchetta HL, Burrows LL, Pacan JC, Lam JS
Mol. Microbiol. 1998 Jun;28(6):1103-19
PubMed ID: 9680202