Pseudomonas putida KT2440, PP_3095 (clpV1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas putida KT2440 (TIGR)
GCF_000007565.2|latest
Locus Tag
PP_3095
Name
clpV1
Synonym: clpV
Replicon chromosome
Genomic location 3488754 - 3491390 (- strand)
CommentPart of the K1-T6SS KT2440-Type VI secretion system

Cross-References

RefSeq NP_745239.1
GI 26989814

Product

Feature Type CDS
Coding Frame 1
Product Name
ClpV1
Product Name Confidence: Class 2
Synonyms protein ClpV1
Evidence for Translation
Charge (pH 7) -12.30
Kyte-Doolittle Hydrophobicity Value -0.192
Molecular Weight (kDa) 96.5
Isoelectric Point (pI) 6.11

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PP_3095
Search term: clpV1
Search term: ClpV1

Human Homologs

Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 2.1e-37
Percent Identity: 35.0
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 2.1e-37
Percent Identity: 35.0
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 2.1e-37
Percent Identity: 35.0

References

The Pseudomonas putida T6SS is a plant warden against phytopathogens.
Bernal P, Allsopp LP, Filloux A, Llamas MA
ISME J 2017 Apr;11(4):972-987
PubMed ID: 28045455