Pseudomonas aeruginosa PAO1, PA1966

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA1966
Name
Replicon chromosome
Genomic location 2149472 - 2149843 (+ strand)

Cross-References

RefSeq NP_250656.1
GI 15597162
Affymetrix PA1966_at
DNASU PaCD00006883
Entrez 877672
GenBank AAG05354.1
INSDC AAG05354.1
NCBI Locus Tag PA1966
protein_id(GenBank) gb|AAG05354.1|AE004623_4|gnl|PseudoCAP|PA1966
TIGR NTL03PA01966
UniParc UPI00000C5534
UniProtKB Acc Q9I2D8
UniProtKB ID Q9I2D8_PSEAE
UniRef100 UniRef100_Q9I2D8
UniRef50 UniRef50_Q1LE31
UniRef90 UniRef90_Q9I2D8

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Charge (pH 7) -3.59
Kyte-Doolittle Hydrophobicity Value -0.063
Molecular Weight (kDa) 13.1
Isoelectric Point (pI) 4.94

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6C9K DE NOVO PROTEIN 01/26/18 Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); synthetic 3.49 ELECTRON MICROSCOPY 93.5
6NHT BIOSYNTHETIC PROTEIN 12/23/18 Single particle reconstruction of the symmetric core an engineered protein scaffold Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) 2.9 ELECTRON MICROSCOPY 93.5
3E6Q ISOMERASE 08/15/08 Putative 5-carboxymethyl-2-hydroxymuconate isomerase from Pseudomonas aeruginosa. Pseudomonas aeruginosa 1.75 X-RAY DIFFRACTION 100.0
6NHV BIOSYNTHETIC PROTEIN 12/24/18 Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold Aequorea victoria; Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) 3.5 ELECTRON MICROSCOPY 93.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 53 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003467 (298 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1966

Human Homologs

References

No references are associated with this feature.