Pseudomonas aeruginosa PAO1, PA3096 (xcpY)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3096
Name
xcpY
Replicon chromosome
Genomic location 3476482 - 3477630 (- strand)
Transposon Mutants 5 transposon mutants in PAO1

Cross-References

RefSeq NP_251786.1
GI 15598292
Affymetrix PA3096_xcpY_at
Entrez 882778
GenBank AAG06484.1
INSDC AAG06484.1
NCBI Locus Tag PA3096
protein_id(GenBank) gb|AAG06484.1|AE004734_2|gnl|PseudoCAP|PA3096
TIGR NTL03PA03096
UniParc UPI000012BC6A
UniProtKB Acc P25060
UniProtKB ID GSPL_PSEAE
UniRef100 UniRef100_P25060
UniRef50 UniRef50_P25060
UniRef90 UniRef90_P25060

Product

Feature Type CDS
Coding Frame 1
Product Name
general secretion pathway protein L
Product Name Confidence: Class 1
Synonyms
Evidence for Translation
Charge (pH 7) -9.96
Kyte-Doolittle Hydrophobicity Value -0.027
Molecular Weight (kDa) 41.3
Isoelectric Point (pI) 4.81

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Cytoplasmic Membrane Class 1
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6GHU TRANSPORT PROTEIN 05/09/18 Crystal structure of the periplasmic domain of XcpY, oP crystal form. Pseudomonas aeruginosa 2 X-RAY DIFFRACTION 100.0
5N7L PROTEIN TRANSPORT 02/20/17 Crystal structure of the periplasmic domain of XcpY, tI crystal form. Pseudomonas aeruginosa PAO1 2.501 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 43 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002496 (352 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3096
Search term: xcpY

Human Homologs

References

Subcomplexes from the Xcp secretion system of Pseudomonas aeruginosa.
Robert V, Filloux A, Michel GP
FEMS Microbiol Lett 2005 Nov 1;252(1):43-50
PubMed ID: 16168578
Membrane topology of three Xcp proteins involved in exoprotein transport by Pseudomonas aeruginosa.
Bleves S, Lazdunski A, Filloux A
J Bacteriol 1996 Jul;178(14):4297-300
PubMed ID: 8763961