Pseudomonas aeruginosa PAO1, PA3940

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3940
Name
Replicon chromosome
Genomic location 4418303 - 4418584 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1

Cross-References

RefSeq NP_252629.1
GI 15599135
Affymetrix PA3940_at
Entrez 878829
GenBank AAG07327.1
INSDC AAG07327.1
NCBI Locus Tag PA3940
protein_id(GenBank) gb|AAG07327.1|AE004812_2|gnl|PseudoCAP|PA3940
TIGR NTL03PA03940
UniParc UPI00000CAAFC
UniProtKB Acc Q9HX76
UniProtKB ID Q9HX76_PSEAE
UniRef100 UniRef100_W0YXW8
UniRef50 UniRef50_D8P884
UniRef90 UniRef90_W0YXW8

Product

Feature Type CDS
Coding Frame 1
Product Name
probable DNA binding protein
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by iTRAQ (PMID:21863142).
Detected by two-dimensional gel electrophoresis, mass spectral analysis and protein mass mapping (PMID:21863142).
Charge (pH 7) 0.99
Kyte-Doolittle Hydrophobicity Value -0.245
Molecular Weight (kDa) 9.9
Isoelectric Point (pI) 9.18

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 1
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 536 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001736 (503 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3940

Human Homologs

References

Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142