Pseudomonas aeruginosa PAO1, PA4907

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA4907
Name
Synonym: ydfG
Replicon chromosome
Genomic location 5505848 - 5506609 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_253594.1
GI 15600100
Affymetrix PA4907_at
Entrez 878002
GenBank AAG08292.1
INSDC AAG08292.1
NCBI Locus Tag PA4907
protein_id(GenBank) gb|AAG08292.1|AE004903_10|gnl|PseudoCAP|PA4907
TIGR NTL03PA04908
UniParc UPI00000C5E71
UniProtKB Acc Q9HUQ6
UniProtKB ID Q9HUQ6_PSEAE
UniRef100 UniRef100_W0YU19
UniRef50 UniRef50_Q1R183
UniRef90 UniRef90_W0YU19

Product

Feature Type CDS
Coding Frame 1
Product Name
probable short-chain dehydrogenase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -5.92
Kyte-Doolittle Hydrophobicity Value -0.047
Molecular Weight (kDa) 27.4
Isoelectric Point (pI) 5.10

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2NWQ OXIDOREDUCTASE 11/16/06 Short chain dehydrogenase from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.3 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 649 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004527 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA4907

Human Homologs

Ensembl 110, assembly GRCh38.p14
retinol dehydrogenase 16 [Source:HGNC Symbol;Acc:HGNC:29674]
E-value: 3.8e-16
Percent Identity: 35.4

References

No references are associated with this feature.