Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5278
|
Name |
dapF
|
Replicon | chromosome |
Genomic location | 5942745 - 5943575 (+ strand) |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_253965.1 |
GI | 15600471 |
Affymetrix | PA5278_dapF_at |
DNASU | PaCD00008280 |
Entrez | 877750 |
GenBank | AAG08663.1 |
INSDC | CAA55224.1 |
NCBI Locus Tag | PA5278 |
protein_id(GenBank) | gb|AAG08663.1|AE004940_7|gnl|PseudoCAP|PA5278 |
TIGR | NTL03PA05279 |
UniParc | UPI0000128EBE |
UniProtKB Acc | Q51564 |
UniProtKB ID | DAPF_PSEAE |
UniRef100 | UniRef100_B7V5G9 |
UniRef50 | UniRef50_Q88CF3 |
UniRef90 | UniRef90_B7V5G9 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
diaminopimelate epimerase
|
Synonyms |
DAP epimerase |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 2.28 |
Kyte-Doolittle Hydrophobicity Value | -0.212 |
Molecular Weight (kDa) | 30.3 |
Isoelectric Point (pI) | 7.67 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 553 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004856 (537 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5278
Search term: dapF
Search term: diaminopimelate epimerase
|
Nucleotide sequence of the dapF gene and flanking regions from Escherichia coli K12.
Richaud C, Printz C
Nucleic Acids Res 1988 Nov 11;16(21):10367
PubMed ID: 3057443
|
Expression of recombinant diaminopimelate epimerase in Escherichia coli. Isolation and inhibition with an irreversible inhibitor.
Higgins W, Tardif C, Richaud C, Krivanek MA, Cardin A
Eur J Biochem 1989 Dec 8;186(1-2):137-43
PubMed ID: 2689171
|
A site-specific recombinase is required for competitive root colonization by Pseudomonas fluorescens WCS365.
Dekkers LC, Phoelich CC, van der Fits L, Lugtenberg BJ
Proc Natl Acad Sci U S A 1998 Jun 9;95(12):7051-6
PubMed ID: 9618537
|