Pseudomonas Genome Database

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Intergenic region 3889745..3889924bp

Key to diagram

View in GBrowse:

Acknowledgements for this annotation

Overview
Sequence Data
Polymorphisms

Feature Overview

Strain

Pseudomonas aeruginosa PAO1 (Tax ID: 208964)

Replicon

Pseudomonas aeruginosa PAO1 chromosome, complete genome
(5677 genes, 6264404 bp) [ RefSeq ]

Feature type

intergenic

Genomic location

3889745 - 3889924

Name

Alternate Names

Locus tag

Tranposon Mutant Available?

No mutants described yet.

Secondary Genomic Features contained in 574712

Features

Type	Name	Sequence	Start	Stop	Strand	PubMed IDs	External DB
motif	transcriptional initiation site (+1)	Retrieve	3889844	3889844	-	1207679410570171	PRODORIC: PT000080
motif	-10 region	Retrieve	3889854	3889859	-	1207679410570171	PRODORIC: PT000080
site	AlgR binding site	Retrieve	3889863	3889872	-	17766417	PRODORIC: SI003033 PRODORIC: PM001684
motif	-35 region	Retrieve	3889874	3889879	-	1207679410570171	PRODORIC: PT000080
site	las-box-like sequence (lasR binding site)	Retrieve	3889879	3889898	-	1207679410570171	PRODORIC: SI001016 PRODORIC: PT000080
inverted_repeat	Inverted repeat (palindrome) of 3889919..3889909	Retrieve	3889896	3889906	+	10827456
inverted_repeat	Inverted repeat (palindrome) of 3889896..3889906	Retrieve	3889909	3889919	-	10827456

Alternate Annotations and Cross-References

KEGG

GBrowse

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PseudoCyc

Click here to view metabolic pathways in PseudoCyc.

Function Classification / Gene Ontology (GO)
PseudoCAP Function Class
Homology
BLINK
Structure Features
CDD predictions
Microarray Expression Data
NCBI GEO	Link

Upstream 500 BP Region	CGTCTCGCCCTTGACCTTCTGCGGCGGGCCGAGGCGCTGGAGGATCACGCCGTTGCGAACGAAATAGCGCTCCATGGCCGTGGTGGTCACCGCCACCACC GAACTGGCGCCCAGGTACCAGGCGCATTGCAGGCTGGACCAGAATATCTTCATCGCCAGCTGCGGATCGTCCGCCGCGCTGGCGGCGTAGCGCGAAAGCT CCCAGACCGACGGATCGCTCGGCGGGGTTTCGCTGCACAGGTAGGCGAAGACGTCCTTGAGCAGGTAGGCGTCGGTCGTCGGCAGCAGGCGGGCGCAACC GCAGATGCCCTGGCGGCTCATGGCGACGATGTAGCGGGTTTGCGGATGGTCGAACTGGTCGAATTCCTGGTCGCGGACCCTGGAGGTGGAGACCACGTCC CAGCCCAGCTTCTCGATGAAGACCTGATGCCGGTAGCGTCCCAGCTCGGCGATCATGGCGGCGGAAAGCCCTTCCAGCGATTCAGAGAGCAATTCGATCA T BLAST search against this genome or other genomes in database Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.
DNA Sequence	GACCAAGTCCCCGTGTCGTGCCGGCCGAGAAAAAAAAGGCGGCATCCCTACCCTGATACTCCTGGGCCCTCTCAGTCGGAGGACATACCAGCACACACAT GAGGGGGAAGACTAAAGGAGGATGAACGGCAGGCAACCTGCCAGATCTGGTAGGGCGCGCCGACCGGCGCGCCCTGCGCT BLAST search against this genome or other genomes in database
Downstream 500 BP region	TCAGATGAGACCCAGCGCCGCGGCGTAGGCGGCAGCCAGCGTCTTGTTCGGCGCGTCGAACTTCTTCTGGATGTTCTTGTGGTGGAAGTTCACCGTGCTC TCGGAGATGCTCAGGATGATGGCGATTTCCCCGGAACTCTTGCCGTCGGCGGTCCATTGCAGGATCTCGCGTTCGCGATGGCTCAGGCAGACCGGGTTGG ACATCAGCATCGGATGCTCCAGGTCGGTCAGCTTCTGGGTCAGCAACTCGATCATGCAACGCAGCCGCAGGCGGATTTCCTCGCGCTCGAAGCTGGAGAT GTTCTGCTGGTCGCGCGCCACGGAAAGCACGCTGAGCAAATTGTTCGGCGCGCGGATCGGCAAGGTCGCGCCGACACAGAGGCCCCAATCGCGAGCCTCG TTCCAGAGCATCCGGCTCTGGTCGAACAGGCTGTCGCTCCAGACCACCATTTCCGAGGAGCGCAGGCCGTTGAGGATCGCCGGATCCACGGCCCCGTAGT T

SNPs

NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in gene of Pseudomonas aeruginosa PAO1, Pseudomonas aeruginosa PAO1 chromosome, complete genome (3889745 to 3889924 bp)

Displaying the first five SNPs out of a total of 45 found in all isolate strains ( View all 45 )

Strain	Type	Mutation Description		Effect	Details	GBrowse
		DNA	Protein
Pseudomonas aeruginosa PA7	Indel	g.3889749delA		1 BP Deletion	INDEL136-3889780-149	View
Pseudomonas aeruginosa PACS2	Indel	g.3889780delA		1 BP Deletion	INDEL136-3889906-112	View
Pseudomonas aeruginosa 39016	Indel	g.3889780delA		1 BP Deletion	INDEL136-3889907-221	View
Pseudomonas aeruginosa PA7	Indel	g.3889796_3889797dupC		1 BP Duplication	INDEL136-3889800-149	View
Pseudomonas aeruginosa 2192	Transversion	g.3889839A>C		Intergenic	SNP136-3889839-110	View

Select to view SNPs in a specific strain

SNP Map

Operons/Regulons
	No operon/regulon data available