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               PA0262               
Key to diagram


View in GBrowse: 9 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA0262 (View 5 updates) Submit an Update GenBank Identifier (GI) 15595459 (Precomputed BLAST results at BLINK )
Genomic location 296861 - 293802 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
POG000090 
Possible inparalog involved.
Product Information
Product Name conserved hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA00263
Systomonas PA0262
RefSeq NP_248953.1
GI 15595459
KEGG PA0262
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Hypothetical, unclassified, unknown
GO Accession GO Term Evidence
Molecular Function
GO:0003674 molecular_function IEA
Biological Process
GO:0033103 protein secretion by the type VI secretion system IEA
Cellular Component
COG PredictionExplanation of COG predictions
Accession Description Category
COG3501 VgrG, Uncharacterized protein conserved in bacteria [Function unknown]. Function unknown
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Bacterial secretion system KEGG pae03070 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field N-terminal ~500 amino acids 56% similar to VgrG and VgrE proteins [Escherichia coli]
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF04524 DUF586, Protein of unknown function, DUF586. 369 448 9e-41 23.0
PF10106 DUF2345, Uncharacterized protein conserved in bacteria (DUF2345). 605 760 4e-50 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region GGTGGTCATCACCAAGGTCTTCGACAAGGCCTCGCCGCTGCTGCTGGCCGCCCTGACCTCCGGCGAGCGCCTGACCAAGGTCGAGATCCAGTGGTACCGC ACCTCCGCCGCCGGCACCCAGGAGCACTACTACACCACCGTCCTGGAAGACGCGATCATCGTCGACATCAAGGACTACATGCACAACTGCCAGGACCCGG GCAACGCCCACTTCACCCACCTGGAAGACGTGCACTTCACCTACCGCAAGATCACCTGGACCCACGAAGTCTCCGGCACCTCCGGCTCCGACGACTGGCG CTCGCCGGTGGCAGGGTGAGTTGACAGGCACACCGGTCGTACACCTGTGCGGCCGGTTCTCCGTCGAGCCGAAAATGTCCGCTACTTCGCGAAATAGACA CCGAGCCAAGACTTTCGGCAGCGGCTGAGCAAGAGTAACGTGGGGCTCGCTTCTCCAACGGATGGGGGAGGAACCGCCCGCCAGGAACAAGGAACGATCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGCGTCAAAGGGACCTGAAATTCACCTTCGTCGTCGGCGAAGGGAAACTCGCGTTCGATGTCGTCGAGTTCGAACTGGAAGAAGCGCTCTGCGAGCCTT TCCGCCTGAACCTGAAGCTGGCCAGCGACAAGAACGCCATCGATTTCAAGCAGGTACTCGACCAGCCGGGCACCTTCACCCTCTGGCAGGACGGCCGTCC GGCCCGCTACGTCCATGGCATCGTCAGCCACTTCACCCAGGGCAGCTCGGGTTTTCGCCGGACCCGCTACGAACTGCTGCTGGAACCGCAGTTGGCGCGC CTGGAGCTGTGCTGCAACTGGCGGATCTTCCAGGAGAAGAGTGTTCCGGAGATTCTCCAGGCGCTGCTCAAGGAACACCGGGTGCTCGACTACGAACAGC GCATCTACCATGAGCACCTGCCGCGCGAATACTGCGTGCAGGCCGGCGACAGCGATCACTACCTGCACGACCGGCTGGCTTTCGAGGAAGGCCTGGTCTA CTACTTCCGCTTCGACGAACACCGCCACACCCTGGTCTGCAGCGACCGGCTCTACGTCCAGGAGCGTATCGCCGGCGGCCCGGTACTGTTCAGCGCCCAG CCGGAGGGCGACAACCCGCAGCCGGTGCTTCATTCTTTCCGCTACAGCGAAAATGTTCGTACGGCTCGACAGACCCAGCGGGACTACAGCTTCAAGCGCC CGACCTACGACCAGGAGCATCATCTCGCTGGCGAGGCGCTCGAGCATCAGGGCTCGTCCTACGAGCGCTACGACTACCCCGGTCGCTACAAGCGGAGCGG CGCCGGCCGGCCTTTCACCGAAAGCCGCCTCAGAGGGCACCGGCGCGATGCGCGGGTGGCATCGGTCAGCGGCGACGACCCGCGGCTGATCCCGGGCCAC GCCTTTGCCCTGGAAGGTCATCCGCGTGCCGACTTCAACGCCTGGTGGCGGCCGGTGCGGGTGGTCCATCGCGGCACCCAGTATGCCGGCCAGGAGGAAG AGTCCGCCGACGCCCCTCTGGGGGTGAGCTACGACCTGCGCGCCGAACTGGTACCCGAGGACGTCGAATGGCGTCCCGCACCGCTGCCTCGGCCGCGTAT CGATGGTCCGCAGATCGCGACGGTAGTCGGCCCGGCAGGGGAAGAGATCCATTGCGACGAGTGGGGACGGGTGAAGGTCCAGTTCCCCTGGGATCGCGAG GGACGTCACGATGAGTTCAGTACCTGCTGGATACGGGTCGCGCAGAACTGGGCAGGTGCCGACTGGGGGCACATGGCGATCCCGCGGATTGGCCAGGAGG TGATCGTCGATTACCTGGACGGCGACTGCGACCAGCCGATCGTCACCGGGCGCACCTACCGGGCGACCAACCGACCGCCCTACGCGCTGCCCGACCACAA GATCCTCAGCACCATCAAGAGCAAGGAGTACAAGGGCAGTCGGGCCAACGAGCTGCGCATCGACGACACCACGGCGCAGATCAGTGCGGCGCTGATGAGC GACCACGGTGCCAGCGCGCTGCACCTGGGCTACCTGACCCATCCTCGGCCCGAAGGCGGCAAGCCGCGCGGCGAGGGCTTCGAACTGCGCACCGACGAAC ATGGCGCGGTGCGTGCGGCCAAGGGGCTGCTGCTGAGCACCGAGGAGCAGCTCAGGGCCGGCGCCGGCCATCTCGACCGAGGCGTCGTGGTGCAGGTGCT GGAGGCCGCGCTGGAGCTGGCCCGCGAGCTGGGCGACTACGCCGGGGAGCACCAGGGCGTGGGGCACGACGCGGCGCCGCAGCAAACCCTCCAGGAAGCC GTGCGCGACCTCGGCCACGGCGCCAACGACGAGTCCGGCAAGAGCAACGGGGGCAAGCCGGCGATCGCCTTGAGCGGTCCGGCAGGGATCGCCGCGGCGA CGCCGGCGAGCCTGACCCTGGCCGCCGGCGAGCACGTCGACAGCGTGGCCCGGCAGAACCAGCAGGTGACCGCCGGGCAGAAGGTGGTGATCAACGCCGG CAGCGACATCGGCCTGTTCGCCCAGGGCGGCGAGCTGCGCCAGATCACCCACCAGGGGCCGATGCTGCTGCAGGCGCAGAAGAACGACATCCGCCTGGAG GCCAAGCAGAGCGTGGAGGTCAGCGCCAGCCAGCAGCACGTGCTGGTCACCGCGAAGGAGCACATCACCCTGATGTGCGGCGGCGCCTACCTGACCCTCA AGGGCGGCAACATCGAGCTGGGCATGCCCGGCAACTTCGTGGTCAAGGCGGCGAAGCACAGTCATGTCGGCGCGGCCAGCCTGGAAGCCGAGCTGCCGCA GTTCGAGGTGGGCGAGACGCAGCGGCGGTTCGTCCTCAAGCAACTGGACGGGCAAACGGCCATGCCCAACGTGCCCTATACCATCACCATGGCCAACGGC GAGGTCATCGAGGGCGTCACCGACGCCGAAGGCGCTACCCAGCTGCTGCAGAAGGATGCGATGAACATCGCCAAGGTCGATATGAAACACACGAAATCGC CCGCCTCCGCAGTTGCCGGGATAGCAGCGGCGGTTGGCGCGGCGGTTGCAGTCGGCAAGCTCCTGGGTGGCCCCGACGCCGAGGCCGGACGTGCTCTCAG CGAAGGGGAAATCAGCCTGGCGAAAGGCGTATTCGGCGATTCCATCGACTATTCCACGGTCCGCCTGCGCGACGAGGACTATGTCCCCTGGCAGGGCAAG GACTACGTGATGGCGCCGAACGGCCACATCTACTTCGGCGAGGAGTTGCGCGGCGTGGCGGACTGGAGCCTGGAGAGCCTGCAGCGCCAGGGTCTGTTCA TTCACGAAATGACCCATGTCTGGCAGCACCAGCATGGCGTCAACGTCCTTCTGGTGGGGGCCTACCAGCAAGCCAGGCAGTTTCTCCTAGGCGACCAGTA CGCCTACCGGTTGGAGCCGGGAAAGACGTTGAAGGACTACAACATCGAACAGCAGGGAGACATCGTTCGAGATTATTTCCTCGAGAAGAACGAGTTCGGG GAAGCCTCTGCGAACAGCAGGTTCGCTGGCGTACTGAAAAACTTCCCAACGGGATACTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MRQRDLKFTFVVGEGKLAFDVVEFELEEALCEPFRLNLKLASDKNAIDFKQVLDQPGTFTLWQDGRPARYVHGIVSHFTQGSSGFRRTRYELLLEPQLAR LELCCNWRIFQEKSVPEILQALLKEHRVLDYEQRIYHEHLPREYCVQAGDSDHYLHDRLAFEEGLVYYFRFDEHRHTLVCSDRLYVQERIAGGPVLFSAQ PEGDNPQPVLHSFRYSENVRTARQTQRDYSFKRPTYDQEHHLAGEALEHQGSSYERYDYPGRYKRSGAGRPFTESRLRGHRRDARVASVSGDDPRLIPGH AFALEGHPRADFNAWWRPVRVVHRGTQYAGQEEESADAPLGVSYDLRAELVPEDVEWRPAPLPRPRIDGPQIATVVGPAGEEIHCDEWGRVKVQFPWDRE GRHDEFSTCWIRVAQNWAGADWGHMAIPRIGQEVIVDYLDGDCDQPIVTGRTYRATNRPPYALPDHKILSTIKSKEYKGSRANELRIDDTTAQISAALMS DHGASALHLGYLTHPRPEGGKPRGEGFELRTDEHGAVRAAKGLLLSTEEQLRAGAGHLDRGVVVQVLEAALELARELGDYAGEHQGVGHDAAPQQTLQEA VRDLGHGANDESGKSNGGKPAIALSGPAGIAAATPASLTLAAGEHVDSVARQNQQVTAGQKVVINAGSDIGLFAQGGELRQITHQGPMLLQAQKNDIRLE AKQSVEVSASQQHVLVTAKEHITLMCGGAYLTLKGGNIELGMPGNFVVKAAKHSHVGAASLEAELPQFEVGETQRRFVLKQLDGQTAMPNVPYTITMANG EVIEGVTDAEGATQLLQKDAMNIAKVDMKHTKSPASAVAGIAAAVGAAVAVGKLLGGPDAEAGRALSEGEISLAKGVFGDSIDYSTVRLRDEDYVPWQGK DYVMAPNGHIYFGEELRGVADWSLESLQRQGLFIHEMTHVWQHQHGVNVLLVGAYQQARQFLLGDQYAYRLEPGKTLKDYNIEQQGDIVRDYFLEKNEFG EASANSRFAGVLKNFPTGY

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA0262 gene of Pseudomonas aeruginosa PAO1, Chromosome (293802 to 296861 bp)


Displaying the first five SNPs out of a total of 30 found in all isolate strains ( View all 30 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.293973T>C
Silent
CTA(Leu) -> CTG(Leu) 		SNP-486676 View
Pseudomonas aeruginosa PA7 Transversion g.294011G>T p.Leu951Met
 Missense
CTG(Leu) -> ATG(Met) 		SNP-486677 View
Pseudomonas aeruginosa C3719 Transversion g.294021G>C
Silent
GTC(Val) -> GTG(Val) 		SNP-34297 View
Pseudomonas aeruginosa 2192 Transversion g.294021G>C
Silent
GTC(Val) -> GTG(Val) 		SNP-46684 View
Pseudomonas aeruginosa PA14 Transition g.294060A>G
Silent
ATT(Ile) -> ATC(Ile) 		SNP-145486 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
PA0260 hypothetical protein
PA0261 hypothetical protein
PA0262 conserved hypothetical protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13157
PubMed Rhs elements comprise three subfamilies which diverged prior to acquisition by Escherichia coli.
Wang YD, Zhao S, Hill CW.
J Bacteriol. 1998 Aug;180(16):4102-10.
PMID: 9696756
 


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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