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               PA0589               
Key to diagram


View in GBrowse: 16 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names glpE
Locus tag PA0589 (View 3 updates) Submit an Update GenBank Identifier (GI) 15595786 (Precomputed BLAST results at BLINK )
Genomic location 649263 - 648931 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name conserved hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA00590
Systomonas PA0589
RefSeq NP_249280.1
GI 15595786
KEGG PA0589
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Energy metabolism
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 72% similar to glpE protein [Escherichia coli]
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF00581 Rhodanese, Rhodanese-like domain. 10 96 1e-12 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region CCGCCTGCGCGCAGCCGAGGTGGAGCAAGCATTGCGCGACGACCAGCGCCTGCCGCTGTTCCTCGACGGCATGTACGGCAACGAGCCGGCCAAGTGGGAC AAGAAGCTGCATGGCATCGATCGTCTGAGGGTGATCACCAACTACTTCACCCGCATGCGTTTCTGCACCGAAGATGGCAAGCTCGACCTGAAGAGCAAGG AAGGCCTCGACACCGCGCCGCCCGGCTACGCCCCCTGGTTCAGCTTCCCTTCGCGCAAGACCCGCGGCGAGAAGATCATCTTCGGCCACTGGGCGGCCCT CGAAGGCCACTGCGACGAGCCCGGCCTGTTCGCCCTGGATACCGGCTGCGTCTGGGGCGCGCGGATGACCCTGTTGAACGTCGACAGCGGCGAACGCCTG AGCTGCGATTGCGCCGAACAGCGCGCGCCGGCCAGACCCGCCGCCACGCCCGCATGAATCCCCGGCGTCCGGTGGACGCCCTGTACACAGGTACCCCGAC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGAGCGACACCTTCCAGCGCATCGCCCCCGAACAGGTCCGCCAACTCCGCGAAAACGGCGCCCAGGTGGTCGACATCCGCGACCCGCAGAGCTTCGCTG TCGGCCATATCAGCGGCTCGCGGCACATCGACAACCACTCGGTGGCGGACTTCATCGCCGCCGCCGACCTCGACGCTCCGCTGGTGGTGGTCTGCTACCA CGGCAACTCCAGCCAGAGCGCCGCCGCCTATTTCATCCAGCAGGGCTTCAGCGACGTCTACAGCCTCGACGGCGGCTTCGAGCTATGGCGCAGCGTCTAT CCCGCGGATACCAGCAGCGGCGAAGCGGAGTAG

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MSDTFQRIAPEQVRQLRENGAQVVDIRDPQSFAVGHISGSRHIDNHSVADFIAAADLDAPLVVVCYHGNSSQSAAAYFIQQGFSDVYSLDGGFELWRSVY PADTSSGEAE

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA0589 gene of Pseudomonas aeruginosa PAO1, Chromosome (648931 to 649263 bp)


Displaying the first five SNPs out of a total of 28 found in all isolate strains ( View all 28 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.648940T>C
Silent
GAA(Glu) -> GAG(Glu) 		SNP-493928 View
Pseudomonas aeruginosa PA7 Transversion g.648947C>G p.Ser106Thr
 Missense
AGC(Ser) -> ACC(Thr) 		SNP-493929 View
Pseudomonas aeruginosa PA7 Transition g.648979T>C
Silent
CTA(Leu) -> CTG(Leu) 		SNP-493930 View
Pseudomonas aeruginosa PA7 Transition g.649039G>A
Silent
GCC(Ala) -> GCT(Ala) 		SNP-493931 View
Pseudomonas aeruginosa C3719 Transition g.649060G>A
Silent
GGC(Gly) -> GGT(Gly) 		SNP-21635 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
PA0589 conserved hypothetical protein
apaH bis(5'-nucleosyl)-tetraphosphatase
PA0591 conserved hypothetical protein
ksgA rRNA (adenine-N6,N6)-dimethyltransferase
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13232
Genomic Context
Genomic context Explanation of Genomic Context Field - Organization NOT conserved with E. coli!
PubMed  


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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