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               PA0646               
Key to diagram


View in GBrowse: 6 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA0646 (View 1 update) Submit an Update GenBank Identifier (GI) 15595843 (Precomputed BLAST results at BLINK )
Genomic location 701477 - 702529 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Unknown (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA00647
Systomonas PA0646
RefSeq NP_249337.1
GI 15595843
KEGG PA0646
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Related to phage, transposon, or plasmid
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions  
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region TGCCTCCGGAGGCATACCATGATACGCCATTCATTGATATTCGCTTCGTGGACGGCGACCGCCTGTACCTGCACTACATCCACCAGGTGACCTCTGAAGT GATGATGCAGTTTCCCAGGGAGATCGAGTCAATTCCGGTCGACCAGGATGGAAAAGTCGAGGTAGCGTTCAGCTATGAACATCCAATGGGATAAGTACGT CAGCCCTGCAAAGGCCGCGGCAGATGTGCGCGATCAGGCCTTGGCCAGCGTGCAGGCCAAGCGCCTTCTGGCCTATCGGGAAGAAAGCAATCCGCTCAAG ACCGAAGCCGAGTTCGATGCGATCAAGGCCGGCGTCGAGCCGGACTATGGCGCCTGGATCGCCAAGGTGGAAGAGATCAAGTCACGATACCCGATGCCTG AATAGCCGAACTCCAGGCTCGCCTGGGCGTCAGCCCTGTGGTTCCGAACTAACCCTATCAAGCCCGCCGACTGCGGGTTTTTCATTATCTGGAGAACGTC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGCCTTGGTATTCCACAGGCACGGTTTCCGTCGTCCTTAATTCGGACACGGTGACCGGCAGCGGCACCGCCTTCAGCGCCAATGCGCGCGCCGGCGATG CCTTCAGAGGGCCGGATGGCCGCTGGTACGAGATCGGCAACGTTGCCAGCGCCACTGTGCTGACCATCAAGCCCGCATATCAAGGAGCTACCGCCAACGG CCAGGCATATTCGATCACCCCGGTGCAGGGGTACTCGAAGACACTGGCGGATCAGTTCCGTGACCTCAGCAATCAATGGGGTTCCCTCCTGGCGGCAGTG AAGCCTTGGGCGATAGCGTCTACCGGTTCGCAGGCGCAGGCTGACATGGGGATCACCGAAGTTGGCCGTGCTATCAATGGAGCCTCTACCGTAGGCAATG CATTGGGGTTCTTGGGAGGTGTTTCCAAGACCCAAGCACCCATGGCCCTGGATATGGACACGGTGAACGAAAGCGGATGGTTCTCGATAACCCCCAATAC TTACAACGTGCCTCTTGGAAACAACAATATCAGCGGTGTGAACGGCCATGTCGCTCTGTCGATGGTATTCGACGCCAGTACCCGCTATCAGCTGTTCTTT GTGAGAAATACCAACCTCCCGGAGGTTTGGTACAGGAGCTGTACCAATGGAACCTGGAAGGAGTGGGTCAGGTTTTATACGACAGACAATATCGTGGGGA GCGTAACGAGGCGACTTGTCACAGGTAAGCCCACCGGGGCCGTGATGGAGAGCGGGACAACTTCCAACGGCTGGTACGTTCGCTTTGCGGATGGTACCCA GATGGCAGCGGCAAGATCCGAACCGGGCCTTTCGTTTGGAGCTAACGTGATACAGCTACCAGCTGCCTTCGTTACGGGCTTCAATACCGGGGTGACCTGC AATTGGATCCCCTCCAGCGGATGGCCTGCCACTGCTGGGCAGGGGGTTCGTGGGGCCTATCTCAACGGTAGCAGCTCTGTTTCTTTCGCGACGGCGCAGG CACTGGGGGCTAACGACACCATTACGGTGATGGCTGTGGGGAGGTGGTACTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MPWYSTGTVSVVLNSDTVTGSGTAFSANARAGDAFRGPDGRWYEIGNVASATVLTIKPAYQGATANGQAYSITPVQGYSKTLADQFRDLSNQWGSLLAAV KPWAIASTGSQAQADMGITEVGRAINGASTVGNALGFLGGVSKTQAPMALDMDTVNESGWFSITPNTYNVPLGNNNISGVNGHVALSMVFDASTRYQLFF VRNTNLPEVWYRSCTNGTWKEWVRFYTTDNIVGSVTRRLVTGKPTGAVMESGTTSNGWYVRFADGTQMAAARSEPGLSFGANVIQLPAAFVTGFNTGVTC NWIPSSGWPATAGQGVRGAYLNGSSSVSFATAQALGANDTITVMAVGRWY

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA0646 gene of Pseudomonas aeruginosa PAO1, Chromosome (701477 to 702529 bp)


Displaying the first five SNPs out of a total of 120 found in all isolate strains ( View all 120 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.701514T>C p.Leu13Pro
 Missense
CTT(Leu) -> CCC(Pro) 		SNP-474226 View
Pseudomonas aeruginosa C3719 Transition g.701515T>C
Silent
CTT(Leu) -> CTC(Leu) 		SNP-35722 View
Pseudomonas aeruginosa 2192 Transition g.701515T>C
Silent
CTT(Leu) -> CTC(Leu) 		SNP-51821 View
Pseudomonas aeruginosa PACS2 Transition g.701515T>C
Not determined
CTT(Leu) -> () 		SNP-113573 View
Pseudomonas aeruginosa PA7 Transition g.701515T>C p.Leu13Pro
 Missense
CTT(Leu) -> CCC(Pro) 		SNP-474227 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
PA0646 hypothetical protein
PA0647 hypothetical protein
PA0648 hypothetical protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13248
PubMed  


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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