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               PA0896               
Key to diagram


View in GBrowse: 15 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name aruF  Alternate Gene Names
Locus tag PA0896 (View 5 updates) Submit an Update GenBank Identifier (GI) 15596093 (Precomputed BLAST results at BLINK )
Genomic location 979329 - 980345 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name arginine/ornithine succinyltransferase AI subunit (Class 1  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA00897
Systomonas PA0896
RefSeq NP_249587.1
GI 15596093
KEGG PA0896
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Operons/Regulons
Type operon
Genes
GeneProduct
aruF arginine/ornithine succinyltransferase AI subunit
aruG arginine/ornithine succinyltransferase AII subunit
aruD succinylglutamate 5-semialdehyde dehydrogenase
aruB succinylarginine dihydrolase
PA0900 hypothetical protein
aruE succinylglutamate desuccinylase
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13297
Genomic Context
Genomic context Explanation of Genomic Context Field - Cluster of arginine/ornithine catabolic genes, adjacent to arginine/ornithine uptake operon
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Amino acid biosynthesis and metabolism
GO Accession GO Term Evidence
Molecular Function
GO:0016748 succinyltransferase activity RCA
GO:0008791 arginine N-succinyltransferase activity RCA
Biological Process
GO:0006520 amino acid metabolic process IDA
GO:0006527 arginine catabolic process RCA
Cellular Component
COG PredictionExplanation of COG predictions
Accession Description Category
COG3138 AstA, Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]. Amino acid transport and metabolism
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
arginine degradation VI PseudoCyc AST-PWY
Arginine and proline metabolism KEGG pae00330 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 100% identical to arginine/ornithine succinyltransferase AI subunit (AruF) [Pseudomonas aeruginosa]
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF04958 AstA, Arginine N-succinyltransferase beta subunit. 2 337 1e-149 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region TGCTGGATGGCGTGAAGGCCAAGCATGAGCGCTTCAAGTCCCGCCTGCAGAAGATCGGCCAGGAGTACGGCATCTTCGACGAGATCCGCGGCATGGGCCT GCTGATCGGCGCGGCGCTGACCGACGAGTGGAAGGGCAAGGCCAGGGATGTGCTCAACGCCGCCGAGAAAGAGGCGGTCATGGTGCTCCAGGCCAGCCCG GACGTGGTGCGCTTCGCGCCGAGCCTGGTGATCGACGACGCCGAGATCGACGAAGGCCTGGAGCGCTTCGAGCGCGCCGTGGCCAAGCTGGTCCGCGGCT GAGCGAACCCACGGGGCCCCGGCGCAGGCCGGGGCACCCGATGCGACATCCCGGAGCGGCCCGCGCCGGAGCCGGGAACCGTGCCGCCGTGCGTGGCGCG GGATCTTCCCTGCTGGACGTTCGAAACCGTGGCACAGGAAGGTGCCGCGGTCCCGCGCATGGATGCGGCAATCATCGTTGTCTGAGAAAGGAGTGACGCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGTTGGTGATGCGCCCCGCCCAAGCGGCCGACCTGCCACAGGTGCAGCGTCTGGCGGCGGACAGCCCGGTAGGCGTCACGTCCTTGCCGGATGACGCCG AACGCCTGCGCGACAAGATCCTCGCTTCCGAGGCCTCGTTCGCCGCGGAGGTGAGCTACAACGGCGAGGAAAGCTATTTCTTCGTCCTCGAGGACAGCGC CAGCGGCGAACTGGTCGGCTGCTCGGCGATCGTCGCCTCGGCCGGGTTCTCGGAACCGTTCTACAGCTTCCGCAACGAAACCTTCGTGCACGCCTCGCGC TCGCTGTCGATCCACAACAAGATCCATGTCCTCTCGCTGTGCCACGACCTTACCGGCAACAGCCTGCTGACCAGTTTCTACGTACAGCGCGACCTGGTGC AGAGCGTCTACGCCGAACTCAACTCGCGCGGTCGCCTGCTGTTCATGGCCAGCCATCCGGAGCGCTTCGCCGACGCGGTGGTGGTGGAGATCGTCGGCTA CAGCGACGAGCAGGGCGAATCGCCGTTCTGGAACGCGGTCGGGCGCAACTTCTTCGACCTGAACTACATCGAGGCGGAAAAGCTCTCCGGGCTGAAGAGC CGCACCTTCCTCGCCGAACTGATGCCGCACTATCCGATCTATGTGCCACTGTTGCCGGATGCCGCCCAGGAGTCCATGGGCCAGGTCCACCCGCGAGCGC AGATCACCTTCGATATCCTGATGCGCGAAGGCTTCGAGACCGACAACTACATCGACATCTTCGATGGCGGCCCGACCCTGCACGCGCGTACCTCGGGGAT TCGCTCGATCGCCCAGAGCCGGGTGGTTCCGGTGAAGATCGGCGAGGCGCCGAAGAGCGGGCGTCCATACCTGGTCACCAACGGCCAGTTGCAGGACTTC CGCGCGGTCGTGCTGGACCTGGACTGGGCGCCCGGCAAGCCGGTGGCCCTGAGTGTTGAAGCCGCCGAGGCCCTGGGCGTCGGCGAAGGCGCCAGCGTGC GCCTGGTCGCGGTCTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MLVMRPAQAADLPQVQRLAADSPVGVTSLPDDAERLRDKILASEASFAAEVSYNGEESYFFVLEDSASGELVGCSAIVASAGFSEPFYSFRNETFVHASR SLSIHNKIHVLSLCHDLTGNSLLTSFYVQRDLVQSVYAELNSRGRLLFMASHPERFADAVVVEIVGYSDEQGESPFWNAVGRNFFDLNYIEAEKLSGLKS RTFLAELMPHYPIYVPLLPDAAQESMGQVHPRAQITFDILMREGFETDNYIDIFDGGPTLHARTSGIRSIAQSRVVPVKIGEAPKSGRPYLVTNGQLQDF RAVVLDLDWAPGKPVALSVEAAEALGVGEGASVRLVAV

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA0896 gene of Pseudomonas aeruginosa PAO1, Chromosome (979329 to 980345 bp)


Displaying the first five SNPs out of a total of 58 found in all isolate strains ( View all 58 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.979400A>G
Silent
GTA(Val) -> GTG(Val) 		SNP-434562 View
Pseudomonas aeruginosa PA7 Transition g.979454T>C
Silent
GCT(Ala) -> GCC(Ala) 		SNP-434563 View
Pseudomonas aeruginosa PA7 Transition g.979478G>A
Silent
GAG(Glu) -> GAA(Glu) 		SNP-434564 View
Pseudomonas aeruginosa PA14 Transition g.979481G>A
Silent
GTG(Val) -> GTA(Val) 		SNP-181521 View
Pseudomonas aeruginosa C3719 Transition g.979538A>G
Silent
GAA(Glu) -> GAG(Glu) 		SNP-9455 View
Select to view SNPs in a specific strain
SNP Map
PubMed Cloning and characterization of argR, a gene that participates in regulation of arginine biosynthesis and catabolism in Pseudomonas aeruginosa PAO1.
Park SM, Lu CD, Abdelal AT.
J Bacteriol. 1997 Sep;179(17):5300-8.
PMID: 9286980
Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.
Itoh Y.
J Bacteriol. 1997 Dec;179(23):7280-90.
PMID: 9393691
 


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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