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               PA0942               
Key to diagram


View in GBrowse: 3 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA0942 (View 3 updates) Submit an Update GenBank Identifier (GI) 15596139 (Precomputed BLAST results at BLINK )
Genomic location 1030772 - 1031332 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name probable transcriptional regulator (Class 3  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA00943
Systomonas PA0942
RefSeq NP_249633.1
GI 15596139
KEGG PA0942
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Transcriptional regulators
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 51% similar to a region of regulatory protein PecS [Erwinia chrysanthemi]
Structure Features
Structure Features Explanation of Structure Features Field PS01117: Bacterial regulatory proteins, marR family signature
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF01047 MarR, MarR family. 56 101 4e-08 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region TCGTCTATGCCTCTTCCGGCGAGCCAGCGTCGAGCGAACTCGCCGGCGCGAGCCCCCAGCTCCTCCGTGACCAGGACATCGAAGTGCAGGTAGCGGCCGT CGCGGGTTCGCACATGGGTGTCGAAGATCTTCACCTCCATGGCCGTTCTCCTTATTTCAGATCGCTGAGCGCCGCACCGAAGTTAAGGTGCAGTACCTGT CCGTCGACAACCAGGGCAGGAACCGACTTGACCCCGGCCTTTTCCGCCTCGGCGATGCGTGCCGATTGTTCGGCGAGATGGACCACTTCGATGTCCACCT GCTTGCGATCGAGCAATGGCAGCAAGGAACGTTCGGCTTCGACACAGATTGCGCAGCCGGCGTGGTAGTAGATGGCTTTGGTCATGCTGATTCTCCTGTG GGAAGTTAGTATCGATACGATACGTTTTCAGCCTAAACAAGGCGCGACCTCTTTGTCAAACATGTTTTTAGTCGATACTATATTGGCAAGGAGGTATCCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGTCCGCCATCGCCCTTTACGATTATCTGGAAAGGCTGACCAGCCTGATGCGTGCCTGGTCCCGCGAGCAGCCGCTGGTGGCTGAGCTGCAGCCGGTGC AGTTGAGCGCCTTGCATTACCTGGCGCGTTGTAATCGCTATTCGGATACTCCGCTGGGCGTGACCGAATACCTCGGCTTGACCAAGGGCACAGTGTCGCA ATCGCTCAAGGTGCTGGAAGGGCGGGGGCTGATCAGCAAGCTGCCGGATGCGCGGGATCGGCGCAGCGTTCATCTGCGGCTGACCGATGCGGGGCGCGCG CTGATCGAGGCGGTGATTCCGCCGCAGTTCCTCGAGCAGGCCGTCACGGCACTGGGCGAGAAGGGCGAACACTTGCAAGGCTTGTTGCGTGATCTTCTGG TCGTCATCCAGCGTCAGGAGGATGTGCCTGGTTTCGGCCTTTGTCGGTCCTGCCGGTTCCATCAACGGCGTGCGGGTTCGCCCTTCTGCGGTCTAACCGG GGAGCCGTTGAGCGATGCCGATGCCGAACTGATCTGCCGCGAGCACCAGGCCTGCGGCTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MSAIALYDYLERLTSLMRAWSREQPLVAELQPVQLSALHYLARCNRYSDTPLGVTEYLGLTKGTVSQSLKVLEGRGLISKLPDARDRRSVHLRLTDAGRA LIEAVIPPQFLEQAVTALGEKGEHLQGLLRDLLVVIQRQEDVPGFGLCRSCRFHQRRAGSPFCGLTGEPLSDADAELICREHQACG

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA0942 gene of Pseudomonas aeruginosa PAO1, Chromosome (1030772 to 1031332 bp)


Displaying the first five SNPs out of a total of 96 found in all isolate strains ( View all 96 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.1030780C>T
Silent
GCC(Ala) -> GCT(Ala) 		SNP-240060 View
Pseudomonas aeruginosa PA7 Transversion g.1030781A>C p.Ile4Leu
 Missense
ATC(Ile) -> CTC(Leu) 		SNP-240061 View
Pseudomonas aeruginosa PACS2 Transition g.1030798T>C
Silent
TAT(Tyr) -> TAC(Tyr) 		SNP-129162 View
Pseudomonas aeruginosa PA14 Transition g.1030798T>C
Silent
TAT(Tyr) -> TAC(Tyr) 		SNP-181998 View
Pseudomonas aeruginosa PA7 Transition g.1030798T>C
Silent
TAT(Tyr) -> TAC(Tyr) 		SNP-240062 View
Select to view SNPs in a specific strain
SNP Map
PubMed  


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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