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               PA1046               
Key to diagram


View in GBrowse: (?) 10 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA1046 (View 8 updates) GenBank Identifier (GI) 15596243 (Precomputed BLAST results at BLINK )
Genomic location 1131674 - 1133947 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Unknown (Class 3Explanation of Localization Confidence)
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Putative enzymes
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 48% similar to beta-agarase B (AgaB) [Vibrio sp.]
52% similar to beta-agarase A (AgaA)[Vibrio sp]
Structure Features
Structure Features Explanation of Structure Features Field type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 31)
type I export signal computationally predicted by Phobius (cleavage after residue 31)
type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 31)
Export across inner membrane confirmed by PhoA fusion screen
PFAM predictions Explanation of PFAM predictions  
Operons/Regulons
Type operon
Genes
GeneProduct
PA1045 hypothetical protein
PA1046 hypothetical protein
PA1047 probable esterase
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13328
Microarray Expression Data
NCBI GEO Link
Sequence data
Upstream 500 BP Region ACTGGCGCAAGCGGGTGTTCATCCAGGGCAACCTGTCCAAGCAGGAAACCCTGAACAAGCACAAGTCGCGAGTCGACGACGGCGAGGACAGCGTGCTCTT CGGCCTCGCCAGTTTCGCCGAAGGCGTGGACCTGCCGGGGGCCTATTGCGAACACGTGGTGATCGCCAAGATTCCCTTCGCGGTACCCGACGACCCGGTG GAGGCGGCGCTGGCCGAGTGGATCGAGGCGCGCGGCGGCAATCCGTTCATGGAGATCGCCGTGCCAGACGCCTCGCTGCGGTTGGTCCAGGCCTGCGGGC GGCTGCTGCGCACCGAGCAGGACCGCGGCACCATCACCCTGCTGGACCGCCGCGTGGTCACCCAGCGCTACGGCAAGGCTATCCTCAATGCATTGCCGCC GTTCCGCCGGGAAATCGCCTGACGCGCTGGCCTGCGCGGGAGGGCGCCAGCCTTCACGTCCGAGCCGCATCAGGAATTCCCGGCATTTGCCCAGGCCGGG

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGGAGTTAAGGAAAACAGGCTTCATGATCCGTTCGCGTTGGCATCTTCCCCTGCTTCTCGGCCTGCTCGCGGTGGCCACGCCGCTGGCGGCGAGCGACA CCCAGCAGGTGCTGTTCAACTTCGTCAAGCCAATGGCCGTGGTCGGCATCACCCTTGAGGATGCCGACCTGCCCAGCGCGACGGCGGAGGCCACCCCGGA GGGCGACATTCTCCGTCGCGTCACCTTCAGCCCGGCGCAACGGCCCACCTTGCGCATGAGTCCGGCGCTGGGCCGTTGGGACTGGTCCGCAGCGGACTAC GTGAGCCTGCGCATCCAGAACGCGATGAGCTGGGACATGACCCTGGAGGTCGCGATCGAGGGCGAGCAGGGCGCGCCGGGGCTGCAGGCATCCATCGAGC TACCGGCAGGCCCGCCGCAGACCCTGCTGGTGCCGTTGCGGGCGGTTTCGCCAGAGGCTCTGGGCATGCGTGCGGGGCCGCCGATGCCACAGATGGTCGA AGGCCAGCGGGTGCTGCTGGCGCCACGCGTGGAGGGCTCGCTGGACCGCGCCAGGGTCGGAGCGCTGAGCCTGTCCCTGCGCTCGCCGCAAGCTCCCCAG AGTATCCTGCTCGGACGTTTCGGCATACGCACAGGGAGGGCGGTGGAGCGGAGCATCCTGACCGGCCTGATCGATCGCTATGGCCAGTACAGCCGCGCCG ACTGGCCGGAAAAGATTCGTTCCGACGAACAGTTGCGCAGCGCCTATGCGGCCGAGGCCGCACAGCTCCGCGACTGGGAACGGCAGACACCGGCGCGCGA CCGTTTCGGCGGCCTGCTGGGTGGGCCGGTGTTCGAAGCCAGCGGTTTCTTCCGCACGGAAAAACGTGGCGGGCGCTGGTGGCTGGTTACTCCGGAAGGA CATCCGTTCTGGTCGCTGGGCGTTAATGCGGTGACCGCCGACGGCAGCCGGACCTACGTCGAAGGACGCGAGCCGATGTTCGCCGAACTGCCGGCGGAGG GTGAGCCGCTGGCCGCATTCTTCGGTGAGGGCGACGACCGCCGCGGCGTCGCCGCGCAGGCCGGGCGGCGCTTCGGGCATGGCCGCTGGTTCGATTTCCT CGGTGCCAATCGCCAGCGCATCGCTCCCCAGGCGAGTGCCGACCAGCTCGCCGGCGAATGGCGCCAGCGCACCCTGGAGCGCCTCTCGGCATGGGGTTTC AACAGCCTCGGCAACTGGAGCGATCCGGCGCTCGCCGCACAGGCGCGGATGCCCTACAGCCTGCCGCTGTCGATCGCCGGCGACTACGCCACGGTCAGCA GCGGTTTCGACTGGTGGGGAGCCATGCCCGATCCCTTCGACCCGCGCTTCGCCATGGCCGCCGAGCGCGTCATCGCCATCGCTGCTCGCGACCACCGCGA CGATCCCTGGCTGCTCGGCTACTACGCCGACAACGAACTGGCCTGGGCCGGGCGCGACGGCTCGGCCCAGGCGCGCTACGGCCTCGCTTTCGGAGCCTTG ACGCTGTCCATGGACAGTCCGGCGAAGCGCGCCTTCGTCAAGCAATTGAAAGCCAAGTACCTGGGCCATGAGGCATTGGCCGAGGCCTGGGGCATCGAGC TGGCCGCCTGGGAGGCCCTGGAGGCGCCGGGCTACGCGGCTCCGCTGCCGGGCGAGGGGCATCCGGCCATCGCCGAGGACTACAGCGCCTTCCTCCGGCT GTATGCCGACGCTTACTTCAAGACCCTGCGCGACGCCCTGCAATGGCACGCACCGAACCACCTCCTGCTCGGCGGCCGCTTCGCCGTCAGCACTCCCGAG GCGATCACCTCCTGCGCCCGGTATTGCGACCTGCTCAGTTTCAACCTCTATACGCCGTTGCCCGGGCAGGGCCTGGACGACTCCCTGCTGGCGCGGCTGG ACAAGCCGGTGCTGATCAGCGAGTTCCACTTCGGCTCGCGGGATCGCGGTCCGTTCTGGGGTGGTGTCAGCGAGGCGGCCAATGAGCGGGCGCGCGGCGA CTCCTACCGAACGTTCCTGGAGGCGGCGCTGAAGAGTCCGTATATCGTCGGCGCCCACTGGTTCCAGTACCTCGACCAACCGGCCAGCGGGCGTCTGCTG GACGGCGAGAACGGCCATATAGGCCTGGTCGGGATCACGGGCTTGCCGTTCGCCGGCTTCGTCGACACGGTGCGCCGAAGCAACCTTGCCGCCCTGTCGC GACTGTCGGCGATGGCCAGGTCCATGCCTGCCGTCGAGCCTCTGCCGCCGCGCGAGGATTCAGCCGGTTCATGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MELRKTGFMIRSRWHLPLLLGLLAVATPLAASDTQQVLFNFVKPMAVVGITLEDADLPSATAEATPEGDILRRVTFSPAQRPTLRMSPALGRWDWSAADY VSLRIQNAMSWDMTLEVAIEGEQGAPGLQASIELPAGPPQTLLVPLRAVSPEALGMRAGPPMPQMVEGQRVLLAPRVEGSLDRARVGALSLSLRSPQAPQ SILLGRFGIRTGRAVERSILTGLIDRYGQYSRADWPEKIRSDEQLRSAYAAEAAQLRDWERQTPARDRFGGLLGGPVFEASGFFRTEKRGGRWWLVTPEG HPFWSLGVNAVTADGSRTYVEGREPMFAELPAEGEPLAAFFGEGDDRRGVAAQAGRRFGHGRWFDFLGANRQRIAPQASADQLAGEWRQRTLERLSAWGF NSLGNWSDPALAAQARMPYSLPLSIAGDYATVSSGFDWWGAMPDPFDPRFAMAAERVIAIAARDHRDDPWLLGYYADNELAWAGRDGSAQARYGLAFGAL TLSMDSPAKRAFVKQLKAKYLGHEALAEAWGIELAAWEALEAPGYAAPLPGEGHPAIAEDYSAFLRLYADAYFKTLRDALQWHAPNHLLLGGRFAVSTPE AITSCARYCDLLSFNLYTPLPGQGLDDSLLARLDKPVLISEFHFGSRDRGPFWGGVSEAANERARGDSYRTFLEAALKSPYIVGAHWFQYLDQPASGRLL DGENGHIGLVGITGLPFAGFVDTVRRSNLAALSRLSAMARSMPAVEPLPPREDSAGS

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
References
PubMed Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE.
Genome Res. 2005 Feb;15(2):321-9.
PMID: 15687295
Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp. strain JT0107.
Sugano Y, Matsumoto T, Kodama H, Noma M.
Appl Environ Microbiol. 1993 Nov;59(11):3750-6.
PMID: 8285681
Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio sp. strain JT0107.
Sugano Y, Matsumoto T, Noma M.
Biochim Biophys Acta. 1994 May 17;1218(1):105-8.
PMID: 8193156
 
Alternate Annotations and Cross-References
TIGR NTL03PA01047
Systomonas PA1046
RefSeq NP_249737.1
GI 15596243
KEGG PA1046
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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