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               PA1060               
Key to diagram


View in GBrowse: 7 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA1060 (View 7 updates) Submit an Update GenBank Identifier (GI) 15596257 (Precomputed BLAST results at BLINK )
Genomic location 1147928 - 1148833 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Alternate Annotations and Cross-References
TIGR NTL03PA01061
Systomonas PA1060
RefSeq NP_249751.1
GI 15596257
KEGG PA1060
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Membrane proteins
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 49% similar to hypothetical protein YbfH [Bacillus subtilis]
Structure Features
Structure Features Explanation of Structure Features Field PF00892: Integral membrane protein
10 predicted transmembrane domains
type I export signal computationally predicted by Phobius (cleavage after residue 26)
type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 26)
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF00892 DUF6, Integral membrane protein DUF6. 18 140 1e-13 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region TGGCGGTGGCCAAATACATGCTGCGCGGAGACATCATCGAATGACTGGCGAACCCCTGAGCCTGTGGCTGGAAATCATCGTCTCGGCGTTCCTCCTGCTG GGCAGCGCCTTCGTCCTGATCGGCGCGATCGGCCTGTACCGCCTGCCGGACTTCTTCATGCGCCTGCACGGGCCGACCAAGGCCACCACCCTCGGGGTCG GCGGGGTGATCGTCGCCTCGCTGATCTATTTCTCCAACCGCCAGGCGGGCATCAGCCTGCACGAATTGCTGATCAGCCTGTTCCTCTTCATCAGCGCCCC GGTCAGCGCCTACATGCTGGCCAAGGCCGCGGTGCTGCAGCAGTTGCCGCTGGAGAAGAAGACTCGCGGCAAGCCCTGGGAGCAGTGAGGCCCGGCGCAA CAGTTTTGCCCGCTTTCTGTGCCTGTCGGCGCAGCTAGCCGGCTGCCTATACTGGGAGTCCTTTTTCCGGCGCCGCGCGGCGCCCGTGGTGGAGATTCCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence TTGACTCGGACGCGCTGGTTCGCCCTGGCCTGCCTGATCCTGGCGATGGCGCTGTGGGGCAGTTCGTACGTGGTGCTGAAGGTCGCTTTCCGCGAACTGC CGCCGCTCTGGGTGATCTTCGGCCGCATGGCCCTCGGCAGCCTGGTGTTCCTCGTTGCCTGGCGCTGGCGCGGACGCATCGACTACCGCCCGGGCGACTG GAAGTACCTGCTCGGCCTGGCCGTCTGCGAACCCTGCCTGTACTTCCTCTGCGAGTCCTTCGCCCTGCAGTACACCAGCGCGGCCCAGGCCGGGATGATC ACCGCGCTGCTGCCGTTGCTGGTGGCGGTGGGGGCCTGGTTGTTGCTGCACGAGCGCATCGGCCGGATGACCTGGATCGGCTTTGGCCTGGCGGTGCTCG GTTCGATCTGGCTGAGCCTCGCCGGCGAGCCCGACCTGCACGCGCCGCAGCCGCTGCTGGGCAATTTCTTCGAACTTCTCGCGATGCTCTGCGCCACCGG CTATACCCTGTTGCTGAAGCACCTTTCGGCGCGCTACTCGGCATTCGCCCTGACCGCCATGCAGGCCTTCGTCGGCACGCTGTTCTTCCTGCCGCTGGCG CTGGCCAGCGCCGACCTGCCGAGCCAGCCCAGCGCGCTGGGGATCCAGGCGGTGGTGTATCTCGGCGTGGTGGTCACGGTGGGCGCCTACGGCCTGTACA ACTTCGGCGTCGGTCGACTGCCGGCCAGCCAGGCCTCGGGCTTCATCAACCTGATCCCGGTCTTCACCCTGGTATTCGCCGCGCTGTTCCTCGGCGAAAC CCTCAACGGCCCGCAGATGCTCGCTGCCGGCCTGGTCTTCATCGGCGTCGCCATCAGCCAGTGGCGCAGCGCTCCGCCGCCGCCTCCGGCCGGCGTCCTG AACTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MTRTRWFALACLILAMALWGSSYVVLKVAFRELPPLWVIFGRMALGSLVFLVAWRWRGRIDYRPGDWKYLLGLAVCEPCLYFLCESFALQYTSAAQAGMI TALLPLLVAVGAWLLLHERIGRMTWIGFGLAVLGSIWLSLAGEPDLHAPQPLLGNFFELLAMLCATGYTLLLKHLSARYSAFALTAMQAFVGTLFFLPLA LASADLPSQPSALGIQAVVYLGVVVTVGAYGLYNFGVGRLPASQASGFINLIPVFTLVFAALFLGETLNGPQMLAAGLVFIGVAISQWRSAPPPPPAGVL N

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA1060 gene of Pseudomonas aeruginosa PAO1, Chromosome (1147928 to 1148833 bp)


Displaying the first five SNPs out of a total of 67 found in all isolate strains ( View all 67 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.1148014T>C
Silent
GCT(Ala) -> GCC(Ala) 		SNP-417951 View
Pseudomonas aeruginosa PA7 Transversion g.1148049G>C p.Gly41Ala
 Missense
GGC(Gly) -> GCC(Ala) 		SNP-417952 View
Pseudomonas aeruginosa LESB58 Transition g.1148050C>T
Silent
GGC(Gly) -> GGT(Gly) 		SNP-94134 View
Pseudomonas aeruginosa PACS2 Transition g.1148050C>T
Silent
GGC(Gly) -> GGT(Gly) 		SNP-118861 View
Pseudomonas aeruginosa PA14 Transition g.1148050C>T
Silent
GGC(Gly) -> GGT(Gly) 		SNP-137278 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
PA1060 hypothetical protein
PA1061 conserved hypothetical protein
PA1062 hypothetical protein
PA1063 hypothetical protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13332
PubMed Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE.
Genome Res. 2005 Feb;15(2):321-9.
PMID: 15687295
 


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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