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               PA1163               
Key to diagram


View in GBrowse: (?) 13 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names ndvB
Locus tag PA1163 (View 7 updates) GenBank Identifier (GI) 15596360 (Precomputed BLAST results at BLINK )
Genomic location 1263166 - 1260557 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
POG000682 
May contain one or more ortholog fragments (i.e. length of smallest gene in group is less than 1/4 of the median length for group)
Product Information
Product Name probable glucosyl transferase (Class 3  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Putative enzymes
Antibiotic resistance and susceptibility
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 53% similar to putative beta (1-6) glucans synthase NdvC [Bradyrhizobium japonicum]
41% similar to cellulose synthase [Agrobacterium tumefaciens]
58% similar to beta-(1-3)-glucosyl transferase NdvB [Bradyrhizobium japonicum]
Structure Features
Structure Features Explanation of Structure Features Field PF00535 Glycosyl transferases
type I export signal computationally predicted by Phobius (cleavage after residue 25)
type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 25)
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF00332 Glyco_hydro_17, Glycosyl hydrolases family 17. 204 303 6e-05 23.0
PF00535 Glycos_transf_2, Glycosyl transferase family 2. 424 596 8e-22 23.0
 
Comments
Comments required for the synthesis of periplasmic glucans, and involved in biofilm-specific resistance to a subset of antibiotics
Microarray Expression Data
NCBI GEO Link
Sequence data
Upstream 500 BP Region CCCGGCAGGCCGGGTTGATGGCCAGGATGCGCGCCGCCATCACCTCGACCTTGGCCTTGCCCACCGAGCCTTCGATGGCATGCACCTGGCGGTTGGTGTT GGTCACGCAGACATCGTCGAGGTCGAACAGGGAAATCTCGCCGACGCCGCTGCGGGCCAGCGCTTCCGCCGCCCAGGAACCGACCCCGCCGATGCCGACC ACCGCGACGTGGCTATCGGCCAGGCGTTGCAGCCCCTCGCGACCGTACAACCGGCCGATACCGCCGAAGCGCTGTTCATCCACCTGCATCACCAACCACC TCTGAAACCGAATCGCGGATTGCCGCGCGCATTATAAAAAGCCGCGGCCGCCGCGTCGCCTGCGTTCTTACGGCTCGTCGCGCAGGCCGGACTAGACTTG CAACAGACCCGCCGGCCCGGCGCCTGTACACCCCGGGGGGTGCGGGGTAGCATGCGCCGCCCCGTGTTCAGCGAAACATCCGGAACCTGGTTTCATCTCT

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGTCTTCACGCAAGATCGGGCTCAACCTGGTGGTCATCGTCGCCCTGGCCGCCCTCTTCACCGGCATCTGGGCCCTGTACAACCGTCCGGTCAGCGTAC CGGACTGGCCGGAACGCATCTCCGGCTTCTCCTTCTCGCCGTTCCGCCTCAACCAGAACCCGCAGAGCGGCCGCTACCCCAGCGCCGAACAGATGCGCAC CGACCTGGAACTGGTCGCCCGGCACACCCACAGCATCCGCACCTATTCGGTCCAGGGCGCGCTCGGCGACATCCCGGCGCTGGCCGAGGCGTTCGGCCTG CGCGTCAGCCTGGGCATCTGGCTCGGCCCGGACCTGGCCAGCAACGAGGCCGAGATCGCCCGCGCCATCCGCATCGCCAACGAGTCGCCGAGCGTGGTGC GAGTGATAGTCGGCAACGAGGCGCTGTTCCGCCGCGAGGTGACGGCGGAACAGTTGATCGCCTACCTCGACCGGGTCCGCGCGGCGGTCAAGGTTCCGGT GACCACCGCCGAACAGTGGCACGTCTACCGCGAACACCCGGAACTGGCGCAACACGTCGACCTGATCGCCGCCCACGTCCTGCCCTACTGGGAGGCCACG CCGGTGGCCGACGCGGTGGACTTCGTGCTCGAACGCGCGCGCGAACTCAAGGCCGCCTTCCCGAGGAAGCCGCTGCTGCTCGCCGAGGTCGGCTGGCCGA GCAACGGGCGCATGCGCGGCAGCGCCGAGGCGACACCCGCGGACCAGGCCATCTACCTGCGGCGCCTGACCAACGCGCTCAACGGCGAAGGCTACAGCTA CTTCGTCATCGAAGCCTTCGACCAGCCCTGGAAGGTCAGCGCCGAAGGCTCGGTGGGCGCCTACTGGGGCGTCTACAACGCCGACCGCAAGGCCAAGTTC AACTTCACCGGGCCGGTGGTGCCGATTCCCAAGTGGCGCGCCCTGGCCATCGCCTCGGCGGTACTCGCGGTACTCGCCTTCACCCTGCTGCTGATCGACA GTTCCTCGCTGCGCCAGCGCGGGAGGACCTTCCTCGCCGTGGTCTCGTTCGCCTGCGCCTCGGTGCTGGTGTGGATCGCCTACGACTACAGCCAGCAGTA CAGCACCTGGTTCAGCCTGACCGTCGGCGCGTTGCTGGGCGTCGGCGCGCTAGGGGTGGTCATCGTGCTGTTCACCGAGGCCCACGAGCTGGCCGAGGCG GTCTGGACGCGCAAGCGGCGCCGGCCATTCCTGCCGATCACCGCCGCGCGGGCCTATCGGCCCAAGGTGTCGATCCACGTGCCCTGCTACAACGAGCCGC CGGAACTGCTGAAGCAGACCCTCGACGCCCTTGCCCGCCTCGACTACCCGGACTACGAAGTCCTGGTGATCGACAACAACACCCGCGACCCGGCCGTCTG GCAGCCGGTCGAGGCGCACTGCGCGCGCCTGGGCGAGCGCTTCCGCTTCTTCCACGTTGCCCCGCTGGAAGGCTTCAAGGCCGGCGCGCTGAACTTCGCC CTGGGCCACGTGGCGGCGGACGTCGAGGTGGTCGCGGTGATCGACGCCGACTACTGCGTCGACCCCGACTGGCTCAGGCACATGGTGCCGCACTTCGGCG ACCCGCGGATCGCCGTGGTGCAGTCGCCGCAGGACTACCGCGACCAGCACGAGAGCGCCTTCAAGCGGCTCTGCTACGCCGAGTACAAGGGCTTCTTCCA CATCGGCATGGTCACCCGCAACGACCGCGACGCGATCATCGAGCACGGCACCATGACCATGATCCGGCGCAGCGTGCTGGACGAGCTGAGATGGCCGGAA TGGTGCATCACCGAGGACGCCGAGCTGGGCCTGCGGGTGTTCGAGAAGGGCCTGTCGGCCGCCTACTTCGAGCGCAGCTACGGCAAGGGGGTGATGCCCG ATACCTTCATCGATTTCAAGAAGCAGCGCTTCCGCTGGGCCTACGGCGCGATCCAGATCATGAAGCGGCATACCGACGCCCTGCTGCGCGGCCGCGGTCC CGACGGCAGCCGCCTGACCCGCGGCCAGCGCTACCACTTCGTGGCCGGCTGGCTGCCGTGGATCGCCGACGGCCTGAACATCTTCTTCACCCTCGGCGCG CTGCTCTGGTCGGCGGCGATGATCATCGTGCCCAAGCGCGTCGACCCGCCGCTGCTGATCTTCGCGATCCTGCCGCTGGCCCTGTTCGTCTTCAAGGTCG GCAAGATCCTCTTCCTCTACCGGCGCACCGTCGGCGTCGACCTGCGCGACTCGTTCTTCGCCGCCCTCGCCGGCCTGTCGCTCTCGCACACCATTGCCAA GGCGGTGCTGTACGGCTTCGTCACCCGCGGCATCCCGTTCTTCCGCACGCCGAAGATGCGCTCCAGCCACGGCCTGCTGGTGGCCCTGGCGGAGGCCCGC GAGGAAGTCTTCGTGATGCTCCTGCTGTGGGGCGCGGCGGCCGGCATCGTGGCGGTTCAGGGCGTGCCGAGCCGCGACCTGCTGATCTGGGTCGCCATGC TCCTGGTGCAATCGCTGCCCTACCTGGCGGCGCTGGTCATGGCCTTGCTCTCGTCGCTGCCGAAACCGCGCGAGGAACTGGCCGGCGGCGCCGAGCAGAT CGGCGGTTGA

BLAST search against this genome or other genomes in database


Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence MSSRKIGLNLVVIVALAALFTGIWALYNRPVSVPDWPERISGFSFSPFRLNQNPQSGRYPSAEQMRTDLELVARHTHSIRTYSVQGALGDIPALAEAFGL RVSLGIWLGPDLASNEAEIARAIRIANESPSVVRVIVGNEALFRREVTAEQLIAYLDRVRAAVKVPVTTAEQWHVYREHPELAQHVDLIAAHVLPYWEAT PVADAVDFVLERARELKAAFPRKPLLLAEVGWPSNGRMRGSAEATPADQAIYLRRLTNALNGEGYSYFVIEAFDQPWKVSAEGSVGAYWGVYNADRKAKF NFTGPVVPIPKWRALAIASAVLAVLAFTLLLIDSSSLRQRGRTFLAVVSFACASVLVWIAYDYSQQYSTWFSLTVGALLGVGALGVVIVLFTEAHELAEA VWTRKRRRPFLPITAARAYRPKVSIHVPCYNEPPELLKQTLDALARLDYPDYEVLVIDNNTRDPAVWQPVEAHCARLGERFRFFHVAPLEGFKAGALNFA LGHVAADVEVVAVIDADYCVDPDWLRHMVPHFGDPRIAVVQSPQDYRDQHESAFKRLCYAEYKGFFHIGMVTRNDRDAIIEHGTMTMIRRSVLDELRWPE WCITEDAELGLRVFEKGLSAAYFERSYGKGVMPDTFIDFKKQRFRWAYGAIQIMKRHTDALLRGRGPDGSRLTRGQRYHFVAGWLPWIADGLNIFFTLGA LLWSAAMIIVPKRVDPPLLIFAILPLALFVFKVGKILFLYRRTVGVDLRDSFFAALAGLSLSHTIAKAVLYGFVTRGIPFFRTPKMRSSHGLLVALAEAR EEVFVMLLLWGAAAGIVAVQGVPSRDLLIWVAMLLVQSLPYLAALVMALLSSLPKPREELAGGAEQIGG

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
References
PubMed Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE.
Genome Res. 2005 Feb;15(2):321-9.
PMID: 15687295
A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resistance.
Mah TF, Pitts B, Pellock B, Walker GC, Stewart PS, O'Toole GA.
Nature. 2003 Nov 20;426(6964):306-10.
PMID: 14628055
 
Alternate Annotations and Cross-References
TIGR NTL03PA01164
Systomonas PA1163
RefSeq NP_249854.1
GI 15596360
KEGG PA1163
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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