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               PA1517               
Key to diagram


View in GBrowse: 16 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA1517 (View 3 updates) Submit an Update GenBank Identifier (GI) 15596714 (Precomputed BLAST results at BLINK )
Genomic location 1649555 - 1648629 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name conserved hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA01518
Systomonas PA1517
RefSeq NP_250208.1
GI 15596714
KEGG PA1517
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Hypothetical, unclassified, unknown
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 62% similar to hypothetical protein SPAC19G12.03 [Schizosaccharomyces pombe]
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF01522 Polysacc_deac_1, Polysaccharide deacetylase. 64 185 3e-23 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region AGTTCCAGTTGCTGGCCTTCCACCCGGTACAGCTCGATCTTGATGCCATGGCCGGGGCAGCCATGTGCGGAATCCAGTACATGCGTGGTCAAACGTCCCA TGGGTTGCGGGCGCCCGCTGGCGGACACCACTCCTCCTCTTGCCTTCGTTCGATGGGGATCGCTCCGGGACCTGCCCGGCGCCGCTCGCTTGCAGCCCGC CAGGGAGCCGCTTGCGAAGCAATATAAGTTATCCTTCGATGAATTGTATACAAAAAACACCGCCACAACCGAAAATGCGGCAGCCGCCCCGAAATCGGGC ATTCCTTCCACAAGCCCCACCCCGCAGGGCCTCATTCTTCGCTAACTGACCAGTCGGGCAGGTTTTTTGCTGGATGAATGGCAGGGATCGGCAAGCAGGA TTGTATTTACAGACCGCAGGCAAACTTGTATACAATAAATCCATCACGGCATCCCCGGCCCGTCCGGCCCGCCGCCCCATCCACAATAAGGAACACTGCT

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence GTGAGCGCTGACTACCCACGCGACCTGATCGGATACGGCAACAACCCTCCCCACCCTCACTGGCCCGGCGATGCCCGCATCGCCCTGTCCTTCGTGCTCA ATTACGAAGAAGGTGGCGAGCGCTGCGTCCTGCATGGCGACAAGGAGTCCGAGGCGTTCCTTTCCGAGATGGTGGCTGCCCAGCCCTTGCAGGGCGTGCG CCACATGAGCATGGAATCGCTCTACGAATACGGCAGCCGCGCCGGGGTCTGGCGCCTGCTCAAGCTGTTCAAGCGACGCAACGTGCCGCTCACCGTGTTC GCCGTGGCCATGGCGGCGCAGCGCAACCCTGAGGTGATCAGGGCGATGGTCGCCGACGGCCACGAAATCTGCAGCCACGGCTACCGCTGGATCGACTACC AGTACATGGACGAGGCCCAGGAGCGCGAGCACATGCTCGAAGCCATCCGCATCCTCACCGAACTCACCGGCCAGCGCCCGGTGGGCTGGTACACCGGACG CACCGGCCCGAACACCCGGCGCCTGGTGATGGAGGAAGGCGGCTTCCTCTATGACTCCGACACCTACGACGACGACCTGCCCTACTGGGACCCGGCCAGC ACCGCGGAGAAACCGCACCTGGTGATTCCCTATACCCTGGACACCAACGACATGCGCTTCACCCAGGTGCAGGGCTTCAACAATGGCGAGCAGTTCTTCC AGTACCTGAAGGACGCCTTCGACGTGCTCTACGAAGAAGGCGCAACGGCGCCGAAGATGCTCTCCATCGGCCTGCATTGCCGGTTGATCGGTCGCCCGGC GCGGATGGCCGCCCTGGAGCGCTTCATCCAGTACGCGCAGAGCCACGACAAGGTCTGGTTCGCCCGCCGCGAAGACATCGCCCGCCATTGGCACCGTGAG CATCCTTTCCAGGAGACCGAGGCATGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MSADYPRDLIGYGNNPPHPHWPGDARIALSFVLNYEEGGERCVLHGDKESEAFLSEMVAAQPLQGVRHMSMESLYEYGSRAGVWRLLKLFKRRNVPLTVF AVAMAAQRNPEVIRAMVADGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGQRPVGWYTGRTGPNTRRLVMEEGGFLYDSDTYDDDLPYWDPAS TAEKPHLVIPYTLDTNDMRFTQVQGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDKVWFARREDIARHWHRE HPFQETEA

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA1517 gene of Pseudomonas aeruginosa PAO1, Chromosome (1648629 to 1649555 bp)


Displaying the first five SNPs out of a total of 44 found in all isolate strains ( View all 44 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.1648637C>T p.Glu307Lys
 Missense
GAG(Glu) -> AAG(Lys) 		SNP-369531 View
Pseudomonas aeruginosa PA7 Transversion g.1648639G>C p.Thr306Ser
 Missense
ACC(Thr) -> AGC(Ser) 		SNP-369532 View
Pseudomonas aeruginosa PA7 Transition g.1648650A>G
Silent
CCT(Pro) -> CCC(Pro) 		SNP-369533 View
Pseudomonas aeruginosa PA7 Transition g.1648653A>G
Silent
CAT(His) -> CAC(His) 		SNP-369534 View
Pseudomonas aeruginosa PA7 Transition g.1648656C>T
Silent
GAG(Glu) -> GAA(Glu) 		SNP-369535 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
PA1513 hypothetical protein
PA1514 ureidoglycolate hydrolaseYbbT
alc allantoicase
PA1516 hypothetical protein
PA1517 conserved hypothetical protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13422
PubMed  


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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