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               PA1784               
Key to diagram


View in GBrowse: 8 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA1784 (View 2 updates) Submit an Update GenBank Identifier (GI) 15596981 (Precomputed BLAST results at BLINK )
Genomic location 1932824 - 1932129 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Unknown (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA01785
Systomonas PA1784
RefSeq NP_250475.1
GI 15596981
KEGG PA1784
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Hypothetical, unclassified, unknown
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 40% similar to alginate lyase (POLY(BETA-D-MANNURONATE) LYASE) [Klebsiella pneumoniae]
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF08787 Alginate_lyase2, Alginate lyase. 2 230 5e-50 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region CATCCAGGCCAGCCGCCTGCAACCGATCCTCGACGTCGCCATGGCGCGCTTCGAGAGCGACCAGGCGCTGCGCGCTCAACTGCAGGCGCGCGAGGCGCAG CTGGCCGAGCGCAAGCGCATCGAGCTGGCCAAGGGCCTGCTGATGAAGATGAAGCATTGCGGCGAGGAGGAGGCCTACACGCTGATGCGGCGCCAGGCCA TGAGCCGCCAGCAGAGGCTGATCCAGGTCGCCGAGCAGATCATCGCCATGCACGACATGCTCGGCGGCTGAATCCGGCTGGGCAGCTGGCGATCATATCG CCAGCCATCCTGCTGGCCCCCGGCGCAGAGCGGCGCGGCTATGCTCGTGCGCCCGGAACGGCCCTATCCGTTCTGGGAGCTACCCCCTCGCCACCCTCGA CTAGCATGACCAGGGAGGCCCGCAGTGGACGCCCAGGGCTAGGAGCCGCAGGCGTCCGCCCGAACCGCACCGCCGACTCAGCGGTCAGGAGATGCTCAGC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGATCGATCTCAGCACCTGGAACCTTACCATTCCCACCGAACCCACCCCGCAGGTGATCACCACCCAGCAACTCAACAACGGCTACCAGAGCCGGTACT TCCAGCAAGGCAACGATGGCGGCCTGGTCTTCTGGGTGCCCATCGACGGCTCGCACACCGAGGACAGCACCTATCCTCGCACCGAACTGCGCGAAACCCA GGCCGACGGCAGCCTCGACAACTGGTACTACTGGCAGGCCGACAACGAACTGCGGGTGACCATGAGCGTCGAGAAGGTCCCCTCGAAGAACAAGGTGATC ATCGGCCAGATCCACAGCAAGTCGCCACAGACCGACGACGGCGAACCTCTGGTGAAGCTGCAGTACTACTACAAGCCCGAGGAAGGCCTCGGCCGGGTCG AGGCGCTGGTACGCAACCACCCGGACGATTCCTATAGCCGCAACGTGTCGATCCTCGAGCAGGTACGCCTGGGCGAGCGCTTCAACTACAGCCTGCGCGT CACCTCCAGCGGCGAGTTGGCGGTGCGCGCGCGCAGCCAGGACGGCGAAGAGGACGCTTACTACCAGACCCTCGGCAGCGCCTGGAACGACCAGTTGCTC TATTTCAAGGCCGGCGCCTACGTGAACGACAACGCCGGCGACAGCGGCGAAGGCAGCCGCGTGACCATCTACCACCTGAACACCGCCCATCGCTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MIDLSTWNLTIPTEPTPQVITTQQLNNGYQSRYFQQGNDGGLVFWVPIDGSHTEDSTYPRTELRETQADGSLDNWYYWQADNELRVTMSVEKVPSKNKVI IGQIHSKSPQTDDGEPLVKLQYYYKPEEGLGRVEALVRNHPDDSYSRNVSILEQVRLGERFNYSLRVTSSGELAVRARSQDGEEDAYYQTLGSAWNDQLL YFKAGAYVNDNAGDSGEGSRVTIYHLNTAHR

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA1784 gene of Pseudomonas aeruginosa PAO1, Chromosome (1932129 to 1932824 bp)


Displaying the first five SNPs out of a total of 57 found in all isolate strains ( View all 57 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.1932210G>A
Silent
GGC(Gly) -> GGT(Gly) 		SNP-384187 View
Pseudomonas aeruginosa PA7 Transition g.1932222A>G
Silent
TAT(Tyr) -> TAC(Tyr) 		SNP-384188 View
Pseudomonas aeruginosa PA7 Transition g.1932230A>G
Silent
TTG(Leu) -> CTG(Leu) 		SNP-384189 View
Pseudomonas aeruginosa PA7 Transition g.1932236C>T p.Asp197Asn
 Missense
GAC(Asp) -> AAC(Asn) 		SNP-384190 View
Pseudomonas aeruginosa PA7 Transition g.1932239T>C p.Asn196Asp
 Missense
AAC(Asn) -> GAC(Asp) 		SNP-384191 View
Select to view SNPs in a specific strain
SNP Map
PubMed Alginate lyase from Klebsiella pneumoniae, subsp. aerogenes: gene cloning, sequence analysis and high-level production in Escherichia coli.
Baron AJ, Wong TY, Hicks SJ, Gacesa P, Willcock D, McPherson MJ.
Gene. 1994 May 27;143(1):61-6.
PMID: 8200539
 


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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