Pseudomonas Genome Database - Annotation for PA2107

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PA2107

Key to diagram

View in GBrowse:

3 putative orthologs

View metabolic pathways using PseudoCyc

Acknowledgements for this annotation

Overview
Functional Data
Sequence Data
Polymorphisms
References

Gene Information
Strain	Pseudomonas aeruginosa PAO1 (Tax ID: 208964)	Replicon	Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name		Alternate Gene Names
Locus tag	PA2107 (View 1 update) Submit an Update	GenBank Identifier (GI)	15597303 (Precomputed BLAST results at BLINK )
Genomic location	2318624 - 2318226 (-)	Feature type	CDS
Transposon Mutant Available?	No transposon mutant available yet	Pseudomonas Ortholog Group	POG003360
Product Information
Product Name	hypothetical protein (Class 4 )
Alternate Product Names
Subcellular localization	Unknown (Class 3)
Alternate Annotations and Cross-References
TIGR	NTL03PA02107
Systomonas	PA2107
RefSeq	NP_250797.1
GI	15597303
KEGG	PA2107
GBrowse	Click here for a GBrowse View of this and other annotations.
PseudoCyc	Click here to view metabolic pathways in PseudoCyc.

Function Classification / Gene Ontology (GO)
PseudoCAP Function Class	Hypothetical, unclassified, unknown
Homology
BLINK	Precomputed BLAST results at BLINK
Structure Features
PFAM predictions
Microarray Expression Data
NCBI GEO	Link

Upstream 500 BP Region

GCTGCCCAGCGCGGTAGCCGCCTGCTGGCCGACGATGGCCAGCACCGGCTGATGATCCATGCGCGCGTCGTAGAGCCCGTTCAGCAGGTGGATCGCGCCC GGCCCCGAGGTGGCCAGGCACACCCCGACCTCTCCGGTGAACTTGGCGTGGGCGCCGGCCATGAAGGCCGCCATCTCCTCGTGGCGCACGCGGATATAGT CGAATGCCTCGGCGCGCCGGCCCATGGCGCCCATGATCCCGTTGATGCCATCGCCGGGGTAGCCGAAGACGCGCTTCACCCCCCACTGGCTCAAGCGTTC GAGCAATTGATCGGCAACCGTGCTGGACATTCTCGCCTCCTGGTCGTGTCTGGGGTCGTACCAATGGGGACTGGCGCCGCAGGCGAGGGTTCAAGGCAAT CGAGCGGCGGTGCCGACGGCGAAATCGACTGAACTGTCGGCGCGGGCGACCGGCCCAAGGGACAGGGCCCGCATGGGCGCAATCGCCAGGAGGTGCCGCC

Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence

ATGACCCGCGCCATCAACGATCCCGGAAACGAAGACCCCGGTTCCCTGCTGGAAACCGACGCCGACGCCCTGCTCGGCGGTGCCGCCGCCCAGGCGCCGG AAGAGCGCTGCCGGCTCGCAGCCCAGGCCTGCATCCGCGCGTGCGAGCGCTACCTGGCGCTCTGCACCGAGTCCAGCAGGGAACAACGCCAGCACGCCGG CGACTGCGCCGACCTCTGCCGCCTCGCCGCCCTACTGCTGGAGCGCCGCAGCCCATGGGCGCCGGCCGCCTGCGAGCTGGCGGCGCGCTATGCCCTGGCA TGCGCCGAGCGTTGCGATGGCGACGAGCCGCTGGAGCGCGAATGTGCGGGTGCCTGCCGGCGCTTCGTCGAAGCCTGTCGGCCGTTGTTGCCGGCCTGA

Downstream 500 BP region

Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence

MTRAINDPGNEDPGSLLETDADALLGGAAAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLLERRSPWAPAACELAARYALA CAERCDGDEPLERECAGACRRFVEACRPLLPA

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK

SNPs

NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA2107 gene of Pseudomonas aeruginosa PAO1, Chromosome (2318226 to 2318624 bp)

Displaying the first five SNPs out of a total of 79 found in all isolate strains ( View all 79 )

Strain	Type	Mutation Description		Effect	Details	GBrowse
		DNA	Protein
Pseudomonas aeruginosa PA7	Transition	g.2318231C>T	p.Ala132Thr	Missense GCC(Ala) -> ACC(Thr)	SNP-367656	View
Pseudomonas aeruginosa PA7	Transition	g.2318232C>T		Silent CCG(Pro) -> CCA(Pro)	SNP-367657	View
Pseudomonas aeruginosa PA14	Transition	g.2318241C>T		Silent CCG(Pro) -> CCA(Pro)	SNP-172138	View
Pseudomonas aeruginosa PA14	Transition	g.2318247A>G		Silent TGT(Cys) -> TGC(Cys)	SNP-172139	View
Pseudomonas aeruginosa C3719	Transition	g.2318253T>C		Silent GAA(Glu) -> GAG(Glu)	SNP-36015	View

Select to view SNPs in a specific strain

SNP Map

PubMed