contact us| site map | view my clipboard
Add this annotation to your clipboard
               PA2783               
Key to diagram


View in GBrowse: 6 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA2783 (View 7 updates) Submit an Update GenBank Identifier (GI) 15597979 (Precomputed BLAST results at BLINK )
Genomic location 3139748 - 3141547 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Periplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA02783
Systomonas PA2783
RefSeq NP_251473.1
GI 15597979
KEGG PA2783
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Hypothetical, unclassified, unknown
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
Structure Features Explanation of Structure Features Field type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 20)
type I export signal computationally predicted by Phobius (cleavage after residue 20)
type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 20)
Export across inner membrane confirmed by PhoA fusion screen
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF02018 CBM_4_9, Carbohydrate binding domain. 458 599 2e-06 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region CAAGGCGAACTGCGCAGCCGCGAAGGCGCCCAGGGCATTCCCGAATACCTGGCGCAGGTCGAACCCGCCCTGCTCGACACGCTGGCGCTCGGCCAGGTGC TGGAAATGAGCCTGCCGGGTCGCGAGCGGCCCTTGCAGGCACGCCTCGCCAGCACCCATAACAGCGCCGGCCTGCCGGTCTGGCGCGGCGGCCTGGTGGA CGGCGACGAGGCGGAAAGCCTGACCGTGGTGCGCGGCAGCCTGGAAACCCACATCAATGTCGCCACCCTCGACGGCAGCTACTCGATCATCGTCGACAAC CGCAGCGGCAAGACCCGGGTGATCGACGAGAACGACATCGCCGCGCGTAGCGACCCGCACGGCGATCATGTCGACGCGCCGCTCGCCGAGCTGCCACCGA TGCCGCCGCCCGCCCAGGGCTGAGCCCACCTTCCCAGCATGTTTCCCCAGCGGTGCCCTCGGGGCGCCATGGCTTCCTATTGTCCGAACACAGGCAACCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGAAGAAATCCCTGCTCTGCTCCACCCTAGCCCTGGCGGTAGCCTCTGCCGCCCAGGCCGCGCCGAAGACCGTCGACATCATGGTCCTCTACACCCCCG CGGCGACCCAGACCGCAAATGGCCGCGACATCGATGCGCGGATCGCCAGCTACATCGAGTTCGCCAACACCGCCTACGAGAAGAGCGGCGTCAACCTGCG CCTGCGTCTGGTGCACAAGCAGCGCCTGGACTGGGCCGACTACCCGACGGTGACCGGCGCCAACCTCGATCGCTTCATGCGCGACCCGCAGGTGCAGCGC CTGCGCGAGCAGTACGGCGCCGACCTGGTCAGCCTGGTCAACCGCTCGCAGAACAGCGGCAACGGCTACATCACCTGCGGCATCGGCTACATGGGCTCGG GCGATAAGAACAGCGGGCGCTTCCACGGCAACGCCAAGGACATTGCCTACAACCTCACCGGGGTCGACTGCGGGCTCAACACCTTCGCCCATGAAGCCGG CCACAACATGGGCCTGCGCCACTCCTACGAGCAGGACCTGGAGTCCAGCTACTACGATCCGCGCTACGCCCACAGCGGCACCTACGAATGGAGCCGCGGC TACGGCGTGCAGGGGCGCTTCGCCACCGTGATGGCCTACCCGCATGCCTTCGGCACCAACAAGCAGGCACCGTTCTTCGCCAACCCGCGCCTGGTCAACG CCGAATGCGCCAACCAGCCCTGCGGCCGCGAAGAACACGCCGACGCCGTACGCGCGCTGAACAGCATGGCCACGCAGATCGCCGACTTTCGCCCGACCAA GGTACCCGGCACGGTCAACCCGGGCTCCGGCGGCGACACGCCGACCCCGCCGGACCTGCCATGGTGCACGAAAGCCAAGCTCGGCGGCCTGCTCGGCGAT GGCGAGTTCGCCAGCATGGAAGGCTGGCGCGCATGGTCCGGCAACGCCCAACTGAGCCTGGTGAACGTCGCCAAGGGCTGCCGCGACAATGCCTTGCTGG TCGACGTGCGTGGCTTCGACCTGCTGGTCCGCCCCATTGCCCCCCTGCGCGCCGGCAGCGGCTACCGGCTGAGCGGCAAGGTCATGCTCAAGGCCGCGAA TACCCGTGAAACCGTGCGCATGGCGCTGCTCAGCGAACGCGCCGATGGCGCCCTGGCCTACAACCCGGCGCAGAGCGTCGAACTGTCGGTCAGCGGCAAC GAGTTCAGTCGCCTGGAGAAGACCTTCGACTACCGTCCCGCCGCCGACCAGCGCAACCTCTACGTGGCGGTCTGGAGCGACAGCGGCGCCAGCCTGCTGG TCGACGAGATGAACCTGCAGGAAGCCCAGGCCGCGCCGCCGAGCGTACCGCCGGCGCCGAAACGCATCGCCTACGACTTCGAGAGCGGCATCGGCGGCTG GAGCGGCGTGCATGCCAGCGCCCGCGCCACGCGCGTCGCCAGCGCCGGGCGGCTGGCCCTGGAAGCCTACCAGCGGCGCTACGCCGGCACCGGCGCGAGC ACCAGCCTGCTGGGCAACCTGGAAGCAGGCCGGACCTACGCGTTCAGCGCGGACGTACGGGTCGGCGACGGTCGCGGCTCGCAGGCCATGACCTATGCCT ACCTCTACCTGGAAAGCCAGGGTCGGCCCGGCGAATACCTGCCCCTGGGCTACAAGGTGGTCGAGAATGGCCGCTGGGCCAGCCTGCGCGGCCAGGTGCA ATTGCCGAAGGGGCCGATCAAGCGTGCTGAACTGATGATCCTCAGCGGTAACCAGCAGGAGTCGATGTTCATCGACAACGTCCAGTTGCTGCAGAAGTAG

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MKKSLLCSTLALAVASAAQAAPKTVDIMVLYTPAATQTANGRDIDARIASYIEFANTAYEKSGVNLRLRLVHKQRLDWADYPTVTGANLDRFMRDPQVQR LREQYGADLVSLVNRSQNSGNGYITCGIGYMGSGDKNSGRFHGNAKDIAYNLTGVDCGLNTFAHEAGHNMGLRHSYEQDLESSYYDPRYAHSGTYEWSRG YGVQGRFATVMAYPHAFGTNKQAPFFANPRLVNAECANQPCGREEHADAVRALNSMATQIADFRPTKVPGTVNPGSGGDTPTPPDLPWCTKAKLGGLLGD GEFASMEGWRAWSGNAQLSLVNVAKGCRDNALLVDVRGFDLLVRPIAPLRAGSGYRLSGKVMLKAANTRETVRMALLSERADGALAYNPAQSVELSVSGN EFSRLEKTFDYRPAADQRNLYVAVWSDSGASLLVDEMNLQEAQAAPPSVPPAPKRIAYDFESGIGGWSGVHASARATRVASAGRLALEAYQRRYAGTGAS TSLLGNLEAGRTYAFSADVRVGDGRGSQAMTYAYLYLESQGRPGEYLPLGYKVVENGRWASLRGQVQLPKGPIKRAELMILSGNQQESMFIDNVQLLQK

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA2783 gene of Pseudomonas aeruginosa PAO1, Chromosome (3139748 to 3141547 bp)


Displaying the first five SNPs out of a total of 242 found in all isolate strains ( View all 242 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transversion g.3139755A>C p.Lys3Thr
 Missense
AAA(Lys) -> ACA(Thr) 		SNP-357636 View
Pseudomonas aeruginosa PA7 Transversion g.3139777A>C
Silent
CTA(Leu) -> CTC(Leu) 		SNP-357637 View
Pseudomonas aeruginosa PA7 Transition g.3139785C>T p.Ala13Val
 Missense
GCG(Ala) -> GTG(Val) 		SNP-357638 View
Pseudomonas aeruginosa PA7 Transition g.3139788T>C p.Val14Ala
 Missense
GTA(Val) -> GCG(Ala) 		SNP-357639 View
Pseudomonas aeruginosa PA7 Transition g.3139789A>G p.Val14Ala
 Missense
GTA(Val) -> GCG(Ala) 		SNP-357640 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
PA2782 hypothetical protein
PA2783 hypothetical protein
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13681
PubMed Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE.
Genome Res. 2005 Feb;15(2):321-9.
PMID: 15687295
 


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

| What's New | FAQs | Cystic Fibrosis | Pseudomonas aeruginosa | Who is Involved? | Annotation Approach | Get Involved | Supplemental Data | Links to More Analyses | Site Map | Acknowledgements | Contact Us |